SOLTUB.AGRIA.G00000001028

Description : YABBY-like transcription factor CRABS CLAW-like protein

Gene families : OG_02_0025606 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000001028
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_76

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
BP	GO:0001708	cell fate specification	None	Extended
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010022	meristem determinacy	None	Extended
BP	GO:0010093	specification of floral organ identity	None	Extended
BP	GO:0010094	specification of carpel identity	IEA	AHRD
BP	GO:0010154	fruit development	IEA	AHRD
BP	GO:0010158	abaxial cell fate specification	IEA	AHRD
BP	GO:0010254	nectary development	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010582	floral meristem determinacy	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0048479	style development	IEA	AHRD
BP	GO:0048509	regulation of meristem development	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048832	specification of plant organ number	None	Extended
BP	GO:0048833	specification of floral organ number	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065001	specification of axis polarity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090701	specification of plant organ identity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902183	regulation of shoot apical meristem development	IEA	AHRD
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2000024	regulation of leaf development	IEA	AHRD
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0000166	nucleotide binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Predict GO terms from Neighborhoods
CC	GO:0005773	vacuole	IEP	Predict GO terms from Neighborhoods
CC	GO:0005788	endoplasmic reticulum lumen	IEP	Predict GO terms from Neighborhoods
MF	GO:0008131	primary amine oxidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009056	catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009308	amine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009653	anatomical structure morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009690	cytokinin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009791	post-embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009823	cytokinin catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009888	tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010017	red or far-red light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010103	stomatal complex morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010161	red light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010229	inflorescence development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010817	regulation of hormone levels	IEP	Predict GO terms from Neighborhoods
MF	GO:0016491	oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0031974	membrane-enclosed lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0034754	cellular hormone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042445	hormone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042447	hormone catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043233	organelle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0048367	shoot system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048507	meristem development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048731	system development	IEP	Predict GO terms from Neighborhoods
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0070013	intracellular organelle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0071489	cellular response to red or far red light	IEP	Predict GO terms from Neighborhoods
BP	GO:0071491	cellular response to red light	IEP	Predict GO terms from Neighborhoods
MF	GO:0071949	FAD binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0090567	reproductive shoot system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090626	plant epidermis morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006780	YABBY	26	157
IPR036910	HMG_box_dom_sf	105	155

External Links

No external refs found!

SOLTUB.AGRIA.G00000001028

Expression Profile

Co-expression Networks

Functional Annotation