Description : spiral1
Gene families : OG_02_0007442 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000001031 | |
Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_241 |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0010005 | cortical microtubule, transverse to long axis | IEA | AHRD |
BP | GO:0043622 | cortical microtubule organization | IEA | AHRD |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000139 | Golgi membrane | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000245 | spliceosomal complex assembly | IEP | Predict GO terms from Neighborhoods |
CC | GO:0000331 | contractile vacuole | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000447 | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000472 | endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000478 | endonucleolytic cleavage involved in rRNA processing | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000479 | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000919 | cell plate assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000966 | RNA 5'-end processing | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000967 | rRNA 5'-end processing | IEP | Predict GO terms from Neighborhoods |
MF | GO:0001530 | lipopolysaccharide binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0001775 | cell activation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0002263 | cell activation involved in immune response | IEP | Predict GO terms from Neighborhoods |
BP | GO:0002274 | myeloid leukocyte activation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0002275 | myeloid cell activation involved in immune response | IEP | Predict GO terms from Neighborhoods |
BP | GO:0002278 | eosinophil activation involved in immune response | IEP | Predict GO terms from Neighborhoods |
BP | GO:0002283 | neutrophil activation involved in immune response | IEP | Predict GO terms from Neighborhoods |
BP | GO:0002366 | leukocyte activation involved in immune response | IEP | Predict GO terms from Neighborhoods |
MF | GO:0003723 | RNA binding | IEP | Predict GO terms from Neighborhoods |
MF | GO:0003924 | GTPase activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0004435 | phosphatidylinositol phospholipase C activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0004629 | phospholipase C activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0004768 | stearoyl-CoA 9-desaturase activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0005046 | KDEL sequence binding | IEP | Predict GO terms from Neighborhoods |
MF | GO:0005048 | signal sequence binding | IEP | Predict GO terms from Neighborhoods |
MF | GO:0005198 | structural molecule activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0005200 | structural constituent of cytoskeleton | IEP | Predict GO terms from Neighborhoods |
MF | GO:0005484 | SNAP receptor activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0005515 | protein binding | IEP | Predict GO terms from Neighborhoods |
MF | GO:0005525 | GTP binding | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005686 | U2 snRNP | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005689 | U12-type spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005730 | nucleolus | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005758 | mitochondrial intermembrane space | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005801 | cis-Golgi network | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006414 | translational elongation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006471 | protein ADP-ribosylation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006633 | fatty acid biosynthetic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006893 | Golgi to plasma membrane transport | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006911 | phagocytosis, engulfment | IEP | Predict GO terms from Neighborhoods |
BP | GO:0007030 | Golgi organization | IEP | Predict GO terms from Neighborhoods |
BP | GO:0007049 | cell cycle | IEP | Predict GO terms from Neighborhoods |
BP | GO:0007204 | positive regulation of cytosolic calcium ion concentration | IEP | Predict GO terms from Neighborhoods |
BP | GO:0007338 | single fertilization | IEP | Predict GO terms from Neighborhoods |
BP | GO:0008104 | protein localization | IEP | Predict GO terms from Neighborhoods |
MF | GO:0008289 | lipid binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0008333 | endosome to lysosome transport | IEP | Predict GO terms from Neighborhoods |
MF | GO:0008482 | sulfite oxidase activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:0009920 | cell plate formation involved in plant-type cell wall biogenesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0010324 | membrane invagination | IEP | Predict GO terms from Neighborhoods |
BP | GO:0010477 | response to sulfur dioxide | IEP | Predict GO terms from Neighborhoods |
BP | GO:0010600 | regulation of auxin biosynthetic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0010601 | positive regulation of auxin biosynthetic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0010770 | positive regulation of cell morphogenesis involved in differentiation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0015031 | protein transport | IEP | Predict GO terms from Neighborhoods |
MF | GO:0016004 | phospholipase activator activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:0016192 | vesicle-mediated transport | IEP | Predict GO terms from Neighborhoods |
MF | GO:0016215 | acyl-CoA desaturase activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0016462 | pyrophosphatase activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0016670 | oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor | IEP | Predict GO terms from Neighborhoods |
MF | GO:0016713 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen | IEP | Predict GO terms from Neighborhoods |
MF | GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | IEP | Predict GO terms from Neighborhoods |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predict GO terms from Neighborhoods |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predict GO terms from Neighborhoods |
BP | GO:0016925 | protein sumoylation | IEP | Predict GO terms from Neighborhoods |
MF | GO:0017076 | purine nucleotide binding | IEP | Predict GO terms from Neighborhoods |
MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | Predict GO terms from Neighborhoods |
CC | GO:0017119 | Golgi transport complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0017156 | calcium-ion regulated exocytosis | IEP | Predict GO terms from Neighborhoods |
MF | GO:0018685 | alkane 1-monooxygenase activity | IEP | Predict GO terms from Neighborhoods |
CC | GO:0018995 | host cellular component | IEP | Predict GO terms from Neighborhoods |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predict GO terms from Neighborhoods |
MF | GO:0019905 | syntaxin binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0022402 | cell cycle process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0022607 | cellular component assembly | IEP | Predict GO terms from Neighborhoods |
CC | GO:0030027 | lamellipodium | IEP | Predict GO terms from Neighborhoods |
BP | GO:0030098 | lymphocyte differentiation | IEP | Predict GO terms from Neighborhoods |
MF | GO:0030151 | molybdenum ion binding | IEP | Predict GO terms from Neighborhoods |
CC | GO:0030175 | filopodium | IEP | Predict GO terms from Neighborhoods |
BP | GO:0030217 | T cell differentiation | IEP | Predict GO terms from Neighborhoods |
CC | GO:0030285 | integral component of synaptic vesicle membrane | IEP | Predict GO terms from Neighborhoods |
CC | GO:0030660 | Golgi-associated vesicle membrane | IEP | Predict GO terms from Neighborhoods |
CC | GO:0030662 | coated vesicle membrane | IEP | Predict GO terms from Neighborhoods |
CC | GO:0030663 | COPI-coated vesicle membrane | IEP | Predict GO terms from Neighborhoods |
MF | GO:0030674 | protein-macromolecule adaptor activity | IEP | Predict GO terms from Neighborhoods |
CC | GO:0030897 | HOPS complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0031001 | response to brefeldin A | IEP | Predict GO terms from Neighborhoods |
CC | GO:0031143 | pseudopodium | IEP | Predict GO terms from Neighborhoods |
CC | GO:0031201 | SNARE complex | IEP | Predict GO terms from Neighborhoods |
CC | GO:0031252 | cell leading edge | IEP | Predict GO terms from Neighborhoods |
BP | GO:0031344 | regulation of cell projection organization | IEP | Predict GO terms from Neighborhoods |
MF | GO:0031435 | mitogen-activated protein kinase kinase kinase binding | IEP | Predict GO terms from Neighborhoods |
CC | GO:0031902 | late endosome membrane | IEP | Predict GO terms from Neighborhoods |
CC | GO:0031970 | organelle envelope lumen | IEP | Predict GO terms from Neighborhoods |
BP | GO:0032350 | regulation of hormone metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0032352 | positive regulation of hormone metabolic process | IEP | Predict GO terms from Neighborhoods |
MF | GO:0032553 | ribonucleotide binding | IEP | Predict GO terms from Neighborhoods |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predict GO terms from Neighborhoods |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predict GO terms from Neighborhoods |
CC | GO:0032991 | protein-containing complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0033036 | macromolecule localization | IEP | Predict GO terms from Neighborhoods |
CC | GO:0033263 | CORVET complex | IEP | Predict GO terms from Neighborhoods |
CC | GO:0033643 | host cell part | IEP | Predict GO terms from Neighborhoods |
BP | GO:0034196 | acylglycerol transport | IEP | Predict GO terms from Neighborhoods |
BP | GO:0034197 | triglyceride transport | IEP | Predict GO terms from Neighborhoods |
BP | GO:0034471 | ncRNA 5'-end processing | IEP | Predict GO terms from Neighborhoods |
BP | GO:0035336 | long-chain fatty-acyl-CoA metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0035337 | fatty-acyl-CoA metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0035493 | SNARE complex assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0035519 | protein K29-linked ubiquitination | IEP | Predict GO terms from Neighborhoods |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0036230 | granulocyte activation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0036260 | RNA capping | IEP | Predict GO terms from Neighborhoods |
BP | GO:0039020 | pronephric nephron tubule development | IEP | Predict GO terms from Neighborhoods |
BP | GO:0042110 | T cell activation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0042119 | neutrophil activation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0042761 | very long-chain fatty acid biosynthetic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0043001 | Golgi to plasma membrane protein transport | IEP | Predict GO terms from Neighborhoods |
BP | GO:0043162 | ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | IEP | Predict GO terms from Neighborhoods |
MF | GO:0043167 | ion binding | IEP | Predict GO terms from Neighborhoods |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predict GO terms from Neighborhoods |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predict GO terms from Neighborhoods |
BP | GO:0043248 | proteasome assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0043299 | leukocyte degranulation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0043307 | eosinophil activation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0043308 | eosinophil degranulation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0043312 | neutrophil degranulation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0043392 | negative regulation of DNA binding | IEP | Predict GO terms from Neighborhoods |
MF | GO:0043546 | molybdopterin cofactor binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0043933 | protein-containing complex organization | IEP | Predict GO terms from Neighborhoods |
BP | GO:0044314 | protein K27-linked ubiquitination | IEP | Predict GO terms from Neighborhoods |
BP | GO:0045055 | regulated exocytosis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0045184 | establishment of protein localization | IEP | Predict GO terms from Neighborhoods |
CC | GO:0045298 | tubulin complex | IEP | Predict GO terms from Neighborhoods |
MF | GO:0045300 | acyl-[acyl-carrier-protein] desaturase activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:0045321 | leukocyte activation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0046677 | response to antibiotic | IEP | Predict GO terms from Neighborhoods |
BP | GO:0046886 | positive regulation of hormone biosynthetic process | IEP | Predict GO terms from Neighborhoods |
MF | GO:0046923 | ER retention sequence binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0047496 | vesicle transport along microtubule | IEP | Predict GO terms from Neighborhoods |
BP | GO:0048015 | phosphatidylinositol-mediated signaling | IEP | Predict GO terms from Neighborhoods |
BP | GO:0048017 | inositol lipid-mediated signaling | IEP | Predict GO terms from Neighborhoods |
BP | GO:0048193 | Golgi vesicle transport | IEP | Predict GO terms from Neighborhoods |
BP | GO:0048213 | Golgi vesicle prefusion complex stabilization | IEP | Predict GO terms from Neighborhoods |
BP | GO:0048280 | vesicle fusion with Golgi apparatus | IEP | Predict GO terms from Neighborhoods |
CC | GO:0048471 | perinuclear region of cytoplasm | IEP | Predict GO terms from Neighborhoods |
BP | GO:0048480 | stigma development | IEP | Predict GO terms from Neighborhoods |
BP | GO:0048814 | regulation of dendrite morphogenesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0050773 | regulation of dendrite development | IEP | Predict GO terms from Neighborhoods |
BP | GO:0050775 | positive regulation of dendrite morphogenesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0051489 | regulation of filopodium assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0051641 | cellular localization | IEP | Predict GO terms from Neighborhoods |
BP | GO:0051668 | localization within membrane | IEP | Predict GO terms from Neighborhoods |
MF | GO:0052694 | jasmonoyl-isoleucine-12-hydroxylase activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0060090 | molecular adaptor activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0060229 | lipase activator activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:0060491 | regulation of cell projection assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0061326 | renal tubule development | IEP | Predict GO terms from Neighborhoods |
MF | GO:0061631 | ubiquitin conjugating enzyme activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0061650 | ubiquitin-like protein conjugating enzyme activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:0061951 | establishment of protein localization to plasma membrane | IEP | Predict GO terms from Neighborhoods |
BP | GO:0065003 | protein-containing complex assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0070227 | lymphocyte apoptotic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0070231 | T cell apoptotic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0070534 | protein K63-linked ubiquitination | IEP | Predict GO terms from Neighborhoods |
MF | GO:0070628 | proteasome binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0070727 | cellular macromolecule localization | IEP | Predict GO terms from Neighborhoods |
BP | GO:0070979 | protein K11-linked ubiquitination | IEP | Predict GO terms from Neighborhoods |
CC | GO:0071004 | U2-type prespliceosome | IEP | Predict GO terms from Neighborhoods |
CC | GO:0071005 | U2-type precatalytic spliceosome | IEP | Predict GO terms from Neighborhoods |
CC | GO:0071010 | prespliceosome | IEP | Predict GO terms from Neighborhoods |
CC | GO:0071011 | precatalytic spliceosome | IEP | Predict GO terms from Neighborhoods |
CC | GO:0071014 | post-mRNA release spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0071629 | cytoplasm protein quality control by the ubiquitin-proteasome system | IEP | Predict GO terms from Neighborhoods |
BP | GO:0071887 | leukocyte apoptotic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0072009 | nephron epithelium development | IEP | Predict GO terms from Neighborhoods |
BP | GO:0072073 | kidney epithelium development | IEP | Predict GO terms from Neighborhoods |
BP | GO:0072080 | nephron tubule development | IEP | Predict GO terms from Neighborhoods |
BP | GO:0072344 | rescue of stalled ribosome | IEP | Predict GO terms from Neighborhoods |
BP | GO:0072384 | organelle transport along microtubule | IEP | Predict GO terms from Neighborhoods |
BP | GO:0072671 | mitochondria-associated ubiquitin-dependent protein catabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0085020 | protein K6-linked ubiquitination | IEP | Predict GO terms from Neighborhoods |
BP | GO:0090313 | regulation of protein targeting to membrane | IEP | Predict GO terms from Neighborhoods |
BP | GO:0090354 | regulation of auxin metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0090355 | positive regulation of auxin metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0090378 | seed trichome elongation | IEP | Predict GO terms from Neighborhoods |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predict GO terms from Neighborhoods |
CC | GO:0098563 | intrinsic component of synaptic vesicle membrane | IEP | Predict GO terms from Neighborhoods |
CC | GO:0098686 | hippocampal mossy fiber to CA3 synapse | IEP | Predict GO terms from Neighborhoods |
CC | GO:0098858 | actin-based cell projection | IEP | Predict GO terms from Neighborhoods |
BP | GO:0098876 | vesicle-mediated transport to the plasma membrane | IEP | Predict GO terms from Neighborhoods |
CC | GO:0098984 | neuron to neuron synapse | IEP | Predict GO terms from Neighborhoods |
CC | GO:0099023 | vesicle tethering complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0099024 | plasma membrane invagination | IEP | Predict GO terms from Neighborhoods |
BP | GO:0099518 | vesicle cytoskeletal trafficking | IEP | Predict GO terms from Neighborhoods |
MF | GO:0102786 | stearoyl-[acp] desaturase activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:0120032 | regulation of plasma membrane bounded cell projection assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0120035 | regulation of plasma membrane bounded cell projection organization | IEP | Predict GO terms from Neighborhoods |
CC | GO:0140220 | pathogen-containing vacuole | IEP | Predict GO terms from Neighborhoods |
BP | GO:0140455 | cytoplasm protein quality control | IEP | Predict GO terms from Neighborhoods |
BP | GO:1900483 | regulation of protein targeting to vacuolar membrane | IEP | Predict GO terms from Neighborhoods |
BP | GO:1903025 | regulation of RNA polymerase II regulatory region sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:1903026 | negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:1903335 | regulation of vacuolar transport | IEP | Predict GO terms from Neighborhoods |
BP | GO:1903533 | regulation of protein targeting | IEP | Predict GO terms from Neighborhoods |
BP | GO:1990116 | ribosome-associated ubiquitin-dependent protein catabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:2000677 | regulation of transcription regulatory region DNA binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:2000678 | negative regulation of transcription regulatory region DNA binding | IEP | Predict GO terms from Neighborhoods |
No InterPro domains available for this sequence
No external refs found! |