Coexpression cluster: Cluster_241 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006396 RNA processing 32.08% (17/53) 2.89 0.0 0.0
GO:0090304 nucleic acid metabolic process 39.62% (21/53) 2.26 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 43.4% (23/53) 2.1 0.0 0.0
GO:0016070 RNA metabolic process 33.96% (18/53) 2.51 0.0 0.0
GO:0034470 ncRNA processing 22.64% (12/53) 3.33 0.0 0.0
GO:1990904 ribonucleoprotein complex 24.53% (13/53) 3.1 0.0 0.0
GO:0032991 protein-containing complex 45.28% (24/53) 1.87 0.0 1e-06
GO:0006364 rRNA processing 16.98% (9/53) 4.0 0.0 1e-06
GO:0016072 rRNA metabolic process 16.98% (9/53) 3.86 0.0 1e-06
GO:0034660 ncRNA metabolic process 22.64% (12/53) 3.06 0.0 2e-06
GO:0034641 cellular nitrogen compound metabolic process 45.28% (24/53) 1.73 0.0 3e-06
GO:0043228 non-membrane-bounded organelle 35.85% (19/53) 2.02 0.0 5e-06
GO:0043232 intracellular non-membrane-bounded organelle 35.85% (19/53) 2.02 0.0 5e-06
GO:0046483 heterocycle metabolic process 43.4% (23/53) 1.72 0.0 5e-06
GO:0005730 nucleolus 22.64% (12/53) 2.7 0.0 1.8e-05
GO:0140513 nuclear protein-containing complex 22.64% (12/53) 2.57 1e-06 4.1e-05
GO:0005654 nucleoplasm 24.53% (13/53) 2.43 1e-06 4.3e-05
GO:0006725 cellular aromatic compound metabolic process 43.4% (23/53) 1.52 1e-06 5.1e-05
GO:0030686 90S preribosome 5.66% (3/53) 7.3 1e-06 5.6e-05
GO:0030684 preribosome 9.43% (5/53) 4.63 2e-06 0.000116
GO:1901360 organic cyclic compound metabolic process 43.4% (23/53) 1.39 4e-06 0.000219
GO:0005681 spliceosomal complex 11.32% (6/53) 3.82 4e-06 0.000239
GO:0043170 macromolecule metabolic process 50.94% (27/53) 1.19 5e-06 0.000267
GO:0016071 mRNA metabolic process 16.98% (9/53) 2.76 6e-06 0.000321
GO:0000469 cleavage involved in rRNA processing 7.55% (4/53) 4.81 1.3e-05 0.00065
GO:0090501 RNA phosphodiester bond hydrolysis 9.43% (5/53) 3.97 1.7e-05 0.000837
GO:0034476 U5 snRNA 3'-end processing 3.77% (2/53) 7.94 2.7e-05 0.001203
GO:0071038 nuclear polyadenylation-dependent tRNA catabolic process 3.77% (2/53) 7.94 2.7e-05 0.001203
GO:0005515 protein binding 66.04% (35/53) 0.8 3e-05 0.001294
GO:0106354 tRNA surveillance 3.77% (2/53) 7.72 3.8e-05 0.00157
GO:0005488 binding 77.36% (41/53) 0.63 4.2e-05 0.001692
GO:0071042 nuclear polyadenylation-dependent mRNA catabolic process 3.77% (2/53) 7.53 5e-05 0.001961
GO:0044238 primary metabolic process 58.49% (31/53) 0.88 5.8e-05 0.002179
GO:0034475 U4 snRNA 3'-end processing 3.77% (2/53) 7.36 6.5e-05 0.002303
GO:0071035 nuclear polyadenylation-dependent rRNA catabolic process 3.77% (2/53) 7.36 6.5e-05 0.002303
GO:0016078 tRNA catabolic process 3.77% (2/53) 7.2 8.1e-05 0.002721
GO:0071047 polyadenylation-dependent mRNA catabolic process 3.77% (2/53) 7.2 8.1e-05 0.002721
GO:0010608 post-transcriptional regulation of gene expression 13.21% (7/53) 2.64 0.000122 0.003554
GO:0003723 RNA binding 22.64% (12/53) 1.8 0.000121 0.003589
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.77% (2/53) 6.94 0.000118 0.003595
GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' 3.77% (2/53) 6.94 0.000118 0.003595
GO:0006807 nitrogen compound metabolic process 52.83% (28/53) 0.92 0.000114 0.003658
GO:0090305 nucleic acid phosphodiester bond hydrolysis 9.43% (5/53) 3.4 0.000113 0.003708
GO:0005575 cellular_component 84.91% (45/53) 0.48 0.000141 0.00383
GO:0000398 mRNA splicing, via spliceosome 7.55% (4/53) 3.93 0.00014 0.003875
GO:0000459 exonucleolytic trimming involved in rRNA processing 3.77% (2/53) 6.83 0.000139 0.003956
GO:0000176 nuclear exosome (RNase complex) 3.77% (2/53) 6.72 0.000162 0.004058
GO:0043634 polyadenylation-dependent ncRNA catabolic process 3.77% (2/53) 6.72 0.000162 0.004058
GO:0071029 nuclear ncRNA surveillance 3.77% (2/53) 6.72 0.000162 0.004058
GO:0071046 nuclear polyadenylation-dependent ncRNA catabolic process 3.77% (2/53) 6.72 0.000162 0.004058
GO:1903311 regulation of mRNA metabolic process 9.43% (5/53) 3.17 0.000232 0.005693
GO:0043487 regulation of RNA stability 7.55% (4/53) 3.71 0.000255 0.006129
GO:0031125 rRNA 3'-end processing 3.77% (2/53) 6.36 0.000272 0.006414
GO:0061013 regulation of mRNA catabolic process 7.55% (4/53) 3.66 0.000291 0.006735
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 5.66% (3/53) 4.54 0.000298 0.006774
GO:0110165 cellular anatomical entity 83.02% (44/53) 0.46 0.000305 0.00681
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 7.55% (4/53) 3.63 0.000315 0.006913
GO:0000375 RNA splicing, via transesterification reactions 7.55% (4/53) 3.59 0.000347 0.007462
GO:0097525 spliceosomal snRNP complex 5.66% (3/53) 4.45 0.000357 0.00756
GO:0034472 snRNA 3'-end processing 3.77% (2/53) 6.13 0.000373 0.007756
GO:0030490 maturation of SSU-rRNA 5.66% (3/53) 4.4 0.0004 0.008193
GO:0009987 cellular process 75.47% (40/53) 0.53 0.000436 0.008781
GO:0043633 polyadenylation-dependent RNA catabolic process 3.77% (2/53) 6.0 0.000448 0.008884
GO:0030532 small nuclear ribonucleoprotein complex 5.66% (3/53) 4.32 0.000471 0.009188
GO:0000178 exosome (RNase complex) 3.77% (2/53) 5.94 0.000488 0.009243
GO:1905354 exoribonuclease complex 3.77% (2/53) 5.94 0.000488 0.009243
GO:0120114 Sm-like protein family complex 5.66% (3/53) 4.28 0.000509 0.009487
GO:0044237 cellular metabolic process 56.6% (30/53) 0.74 0.000574 0.010245
GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic 3.77% (2/53) 5.83 0.000574 0.010393
GO:0140142 nucleocytoplasmic carrier activity 3.77% (2/53) 5.83 0.000574 0.010393
GO:0016075 rRNA catabolic process 3.77% (2/53) 5.72 0.000667 0.011564
GO:0071027 nuclear RNA surveillance 3.77% (2/53) 5.72 0.000667 0.011564
GO:0031123 RNA 3'-end processing 5.66% (3/53) 4.11 0.000713 0.012197
GO:0003724 RNA helicase activity 5.66% (3/53) 4.09 0.000746 0.012586
GO:0005829 cytosol 32.08% (17/53) 1.17 0.000772 0.012684
GO:0006397 mRNA processing 9.43% (5/53) 2.79 0.000768 0.012787
GO:0071025 RNA surveillance 3.77% (2/53) 5.57 0.000818 0.012931
GO:0030331 nuclear estrogen receptor binding 3.77% (2/53) 5.57 0.000818 0.012931
GO:0080008 Cul4-RING E3 ubiquitin ligase complex 5.66% (3/53) 4.05 0.000814 0.013205
GO:0031461 cullin-RING ubiquitin ligase complex 7.55% (4/53) 3.22 0.000898 0.014026
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic 3.77% (2/53) 5.48 0.000927 0.014296
GO:1902494 catalytic complex 16.98% (9/53) 1.8 0.000953 0.01451
GO:0003676 nucleic acid binding 32.08% (17/53) 1.14 0.000972 0.01463
GO:0008186 ATP-dependent activity, acting on RNA 5.66% (3/53) 3.94 0.001002 0.014903
GO:0060135 maternal process involved in female pregnancy 3.77% (2/53) 5.32 0.001165 0.017124
GO:0071704 organic substance metabolic process 58.49% (31/53) 0.66 0.001194 0.017146
GO:0000956 nuclear-transcribed mRNA catabolic process 5.66% (3/53) 3.85 0.001193 0.017332
GO:0033119 negative regulation of RNA splicing 3.77% (2/53) 5.2 0.001361 0.017529
GO:0008482 sulfite oxidase activity 1.89% (1/53) 9.53 0.001356 0.017641
GO:0010477 response to sulfur dioxide 1.89% (1/53) 9.53 0.001356 0.017641
GO:0048539 bone marrow development 1.89% (1/53) 9.53 0.001356 0.017641
GO:0034473 U1 snRNA 3'-end processing 1.89% (1/53) 9.53 0.001356 0.017641
GO:0039534 negative regulation of MDA-5 signaling pathway 1.89% (1/53) 9.53 0.001356 0.017641
GO:1990784 response to dsDNA 1.89% (1/53) 9.53 0.001356 0.017641
GO:1990786 cellular response to dsDNA 1.89% (1/53) 9.53 0.001356 0.017641
GO:0048213 Golgi vesicle prefusion complex stabilization 1.89% (1/53) 9.53 0.001356 0.017641
GO:0034661 ncRNA catabolic process 3.77% (2/53) 5.17 0.00143 0.018224
GO:0016180 snRNA processing 3.77% (2/53) 5.24 0.001294 0.018371
GO:0008380 RNA splicing 7.55% (4/53) 3.01 0.001558 0.019652
GO:0008150 biological_process 81.13% (43/53) 0.4 0.00179 0.022356
GO:0008152 metabolic process 60.38% (32/53) 0.6 0.001887 0.023108
GO:0004532 exoribonuclease activity 3.77% (2/53) 4.97 0.001875 0.02319
GO:0006402 mRNA catabolic process 5.66% (3/53) 3.56 0.002149 0.025813
GO:0003674 molecular_function 79.25% (42/53) 0.41 0.002142 0.025976
GO:0043628 small regulatory ncRNA 3'-end processing 3.77% (2/53) 4.83 0.00229 0.027244
GO:0140640 catalytic activity, acting on a nucleic acid 11.32% (6/53) 2.13 0.00244 0.028483
GO:0008283 cell population proliferation 5.66% (3/53) 3.5 0.002419 0.0285
GO:0140098 catalytic activity, acting on RNA 9.43% (5/53) 2.4 0.002564 0.029653
GO:0062152 mRNA (cytidine-5-)-methyltransferase activity 1.89% (1/53) 8.53 0.00271 0.030494
GO:0004347 glucose-6-phosphate isomerase activity 1.89% (1/53) 8.53 0.00271 0.030494
GO:0043488 regulation of mRNA stability 5.66% (3/53) 3.44 0.002708 0.031031
GO:1901987 regulation of cell cycle phase transition 7.55% (4/53) 2.76 0.002881 0.032127
GO:0016073 snRNA metabolic process 3.77% (2/53) 4.64 0.002937 0.032468
GO:1903313 positive regulation of mRNA metabolic process 5.66% (3/53) 3.36 0.00314 0.034398
GO:0000151 ubiquitin ligase complex 7.55% (4/53) 2.69 0.003409 0.037026
GO:0006401 RNA catabolic process 5.66% (3/53) 3.23 0.004075 0.039459
GO:1990477 MTREC complex 1.89% (1/53) 7.94 0.004062 0.03964
GO:0036415 regulation of tRNA stability 1.89% (1/53) 7.94 0.004062 0.03964
GO:0036416 tRNA stabilization 1.89% (1/53) 7.94 0.004062 0.03964
GO:1902370 regulation of tRNA catabolic process 1.89% (1/53) 7.94 0.004062 0.03964
GO:1902371 negative regulation of tRNA catabolic process 1.89% (1/53) 7.94 0.004062 0.03964
GO:1903326 regulation of tRNA metabolic process 1.89% (1/53) 7.94 0.004062 0.03964
GO:1903327 negative regulation of tRNA metabolic process 1.89% (1/53) 7.94 0.004062 0.03964
GO:0075525 viral translational termination-reinitiation 1.89% (1/53) 7.94 0.004062 0.03964
GO:0039533 regulation of MDA-5 signaling pathway 1.89% (1/53) 7.94 0.004062 0.03964
GO:1904409 regulation of secretory granule organization 1.89% (1/53) 7.94 0.004062 0.03964
GO:1904411 positive regulation of secretory granule organization 1.89% (1/53) 7.94 0.004062 0.03964
GO:0017148 negative regulation of translation 5.66% (3/53) 3.28 0.003701 0.039852
GO:0034249 negative regulation of cellular amide metabolic process 5.66% (3/53) 3.21 0.004221 0.040558
GO:0006913 nucleocytoplasmic transport 5.66% (3/53) 3.2 0.004321 0.041194
GO:0140104 molecular carrier activity 3.77% (2/53) 4.44 0.00388 0.041425
GO:0051169 nuclear transport 5.66% (3/53) 3.19 0.004421 0.041518
GO:0019843 rRNA binding 5.66% (3/53) 3.18 0.004472 0.041682
GO:0031329 regulation of cellular catabolic process 9.43% (5/53) 2.21 0.004407 0.041696
GO:0003727 single-stranded RNA binding 5.66% (3/53) 3.13 0.004945 0.045414
GO:0051252 regulation of RNA metabolic process 22.64% (12/53) 1.19 0.004912 0.045443
GO:0070084 protein initiator methionine removal 1.89% (1/53) 7.53 0.005413 0.04568
GO:0000292 RNA fragment catabolic process 1.89% (1/53) 7.53 0.005413 0.04568
GO:0045694 regulation of embryo sac egg cell differentiation 1.89% (1/53) 7.53 0.005413 0.04568
GO:1903241 U2-type prespliceosome assembly 1.89% (1/53) 7.53 0.005413 0.04568
GO:0002946 tRNA C5-cytosine methylation 1.89% (1/53) 7.53 0.005413 0.04568
GO:0010368 chloroplast isoamylase complex 1.89% (1/53) 7.53 0.005413 0.04568
GO:0030581 symbiont intracellular protein transport in host 1.89% (1/53) 7.53 0.005413 0.04568
GO:0075506 entry of viral genome into host nucleus through nuclear pore complex via importin 1.89% (1/53) 7.53 0.005413 0.04568
GO:0075732 viral penetration into host nucleus 1.89% (1/53) 7.53 0.005413 0.04568
GO:0080034 host response to induction by symbiont of tumor, nodule or growth in host 1.89% (1/53) 7.53 0.005413 0.04568
GO:1900017 positive regulation of cytokine production involved in inflammatory response 1.89% (1/53) 7.53 0.005413 0.04568
GO:0036093 germ cell proliferation 1.89% (1/53) 7.53 0.005413 0.04568
GO:2000112 regulation of cellular macromolecule biosynthetic process 9.43% (5/53) 2.14 0.005493 0.04574
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.77% (2/53) 4.19 0.005458 0.045748
GO:0044260 cellular macromolecule metabolic process 20.75% (11/53) 1.24 0.005575 0.046116
GO:0010468 regulation of gene expression 26.42% (14/53) 1.04 0.005737 0.047146
GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding 5.66% (3/53) 3.05 0.005798 0.047335
GO:0000478 endonucleolytic cleavage involved in rRNA processing 3.77% (2/53) 4.1 0.00613 0.049717
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_257 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_260 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_74 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_119 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_123 0.01 Orthogroups with 8 Potato genotypes Compare
Sequences (53) (download table)

InterPro Domains

GO Terms

Family Terms