Coexpression cluster: Cluster_154 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0010476 gibberellin mediated signaling pathway 7.04% (5/71) 3.96 1.8e-05 0.007338
GO:0003700 DNA-binding transcription factor activity 18.31% (13/71) 2.04 1.4e-05 0.008121
GO:0009909 regulation of flower development 11.27% (8/71) 2.67 3.7e-05 0.011056
GO:0010724 regulation of definitive erythrocyte differentiation 2.82% (2/71) 7.3 6.8e-05 0.011613
GO:2001141 regulation of RNA biosynthetic process 23.94% (17/71) 1.41 0.000153 0.013074
GO:0048831 regulation of shoot system development 11.27% (8/71) 2.59 5.6e-05 0.013372
GO:0060860 regulation of floral organ abscission 4.23% (3/71) 4.74 0.000201 0.013374
GO:0003677 DNA binding 23.94% (17/71) 1.5 6.7e-05 0.013387
GO:0050793 regulation of developmental process 26.76% (19/71) 1.27 0.00019 0.013393
GO:0140110 transcription regulator activity 18.31% (13/71) 1.76 0.000101 0.013404
GO:0001067 transcription regulatory region nucleic acid binding 16.9% (12/71) 1.77 0.000184 0.013759
GO:1990837 sequence-specific double-stranded DNA binding 16.9% (12/71) 1.74 0.00022 0.013854
GO:1903506 regulation of nucleic acid-templated transcription 23.94% (17/71) 1.41 0.000152 0.013983
GO:0000976 transcription cis-regulatory region binding 16.9% (12/71) 1.77 0.000178 0.014194
GO:2000026 regulation of multicellular organismal development 18.31% (13/71) 1.73 0.000119 0.014214
GO:0046886 positive regulation of hormone biosynthetic process 4.23% (3/71) 4.62 0.000253 0.014426
GO:0048580 regulation of post-embryonic development 15.49% (11/71) 1.83 0.000241 0.014428
GO:0019219 regulation of nucleobase-containing compound metabolic process 26.76% (19/71) 1.31 0.000134 0.014565
GO:0006355 regulation of DNA-templated transcription 23.94% (17/71) 1.41 0.000147 0.014636
GO:0043455 regulation of secondary metabolic process 9.86% (7/71) 2.71 0.0001 0.015026
GO:0009740 gibberellic acid mediated signaling pathway 7.04% (5/71) 4.07 1.3e-05 0.01524
GO:0009755 hormone-mediated signaling pathway 15.49% (11/71) 1.77 0.000338 0.018405
GO:0003690 double-stranded DNA binding 16.9% (12/71) 1.62 0.000458 0.021946
GO:0051252 regulation of RNA metabolic process 23.94% (17/71) 1.27 0.000456 0.022757
GO:0010468 regulation of gene expression 28.17% (20/71) 1.14 0.000441 0.022972
GO:0070137 ubiquitin-like protein-specific endopeptidase activity 2.82% (2/71) 5.86 0.000545 0.024173
GO:0070139 SUMO-specific endopeptidase activity 2.82% (2/71) 5.86 0.000545 0.024173
GO:0048444 floral organ morphogenesis 4.23% (3/71) 4.18 0.000622 0.025679
GO:0032352 positive regulation of hormone metabolic process 4.23% (3/71) 4.2 0.000602 0.025752
GO:0016926 protein desumoylation 2.82% (2/71) 5.52 0.000875 0.034908
GO:1903338 regulation of cell wall organization or biogenesis 5.63% (4/71) 3.16 0.001069 0.03763
GO:2000488 positive regulation of brassinosteroid biosynthetic process 2.82% (2/71) 5.35 0.001109 0.037918
GO:0010556 regulation of macromolecule biosynthetic process 23.94% (17/71) 1.17 0.001058 0.038368
GO:0005925 focal adhesion 2.82% (2/71) 5.4 0.001028 0.038446
GO:0043565 sequence-specific DNA binding 16.9% (12/71) 1.49 0.001015 0.039187
GO:0030055 cell-substrate junction 2.82% (2/71) 5.3 0.001193 0.039654
GO:0046889 positive regulation of lipid biosynthetic process 5.63% (4/71) 3.07 0.001348 0.0436
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_161 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_165 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_187 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_20 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_55 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_88 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_95 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_116 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_148 0.009 Orthogroups with 8 Potato genotypes Compare
Sequences (71) (download table)

InterPro Domains

GO Terms

Family Terms