Coexpression cluster: Cluster_186 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016629 12-oxophytodienoate reductase activity 5.56% (4/72) 6.56 0.0 9.1e-05
GO:0010088 phloem development 6.94% (5/72) 5.3 0.0 9.4e-05
GO:0010181 FMN binding 5.56% (4/72) 4.82 1.3e-05 0.002579
GO:0009266 response to temperature stimulus 22.22% (16/72) 1.79 1.1e-05 0.002702
GO:0009695 jasmonic acid biosynthetic process 5.56% (4/72) 4.89 1e-05 0.003476
GO:0071486 cellular response to high light intensity 4.17% (3/72) 5.38 5.2e-05 0.005206
GO:0055063 sulfate ion homeostasis 4.17% (3/72) 5.42 4.8e-05 0.005346
GO:0072505 divalent inorganic anion homeostasis 4.17% (3/72) 5.42 4.8e-05 0.005346
GO:0010087 phloem or xylem histogenesis 11.11% (8/72) 2.66 3.8e-05 0.005482
GO:0090057 root radial pattern formation 4.17% (3/72) 5.31 6.1e-05 0.005506
GO:0010052 guard cell differentiation 4.17% (3/72) 5.58 3.4e-05 0.005719
GO:0009408 response to heat 12.5% (9/72) 2.23 0.000121 0.008018
GO:0071214 cellular response to abiotic stimulus 12.5% (9/72) 2.25 0.000114 0.008105
GO:0104004 cellular response to environmental stimulus 12.5% (9/72) 2.25 0.000114 0.008105
GO:0010030 positive regulation of seed germination 5.56% (4/72) 4.04 0.000107 0.008889
GO:0010035 response to inorganic substance 25.0% (18/72) 1.35 0.00016 0.009985
GO:0048482 plant ovule morphogenesis 2.78% (2/72) 6.63 0.000182 0.010677
GO:0071484 cellular response to light intensity 4.17% (3/72) 4.74 0.0002 0.011063
GO:0071482 cellular response to light stimulus 8.33% (6/72) 2.8 0.000229 0.011399
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor 5.56% (4/72) 3.74 0.00024 0.011414
GO:0010372 positive regulation of gibberellin biosynthetic process 2.78% (2/72) 6.5 0.000218 0.01145
GO:0009611 response to wounding 13.89% (10/72) 1.93 0.000273 0.012361
GO:0009625 response to insect 5.56% (4/72) 3.64 0.000308 0.012803
GO:1901700 response to oxygen-containing compound 33.33% (24/72) 1.03 0.000306 0.013285
GO:0009991 response to extracellular stimulus 13.89% (10/72) 1.88 0.000368 0.014684
GO:0071478 cellular response to radiation 8.33% (6/72) 2.63 0.000425 0.015711
GO:0009694 jasmonic acid metabolic process 5.56% (4/72) 3.53 0.000413 0.015838
GO:0010497 plasmodesmata-mediated intercellular transport 4.17% (3/72) 4.31 0.000478 0.015888
GO:1902066 regulation of cell wall pectin metabolic process 4.17% (3/72) 4.31 0.000478 0.015888
GO:0031408 oxylipin biosynthetic process 4.17% (3/72) 4.31 0.000478 0.015888
GO:0048443 stamen development 4.17% (3/72) 4.28 0.000513 0.015984
GO:0031407 oxylipin metabolic process 4.17% (3/72) 4.26 0.000531 0.016045
GO:0051082 unfolded protein binding 5.56% (4/72) 3.45 0.000512 0.016454
GO:0000302 response to reactive oxygen species 9.72% (7/72) 2.28 0.000591 0.017344
GO:0031668 cellular response to extracellular stimulus 11.11% (8/72) 2.05 0.000683 0.018914
GO:0051259 protein complex oligomerization 6.94% (5/72) 2.85 0.00067 0.019075
GO:0007154 cell communication 12.5% (9/72) 1.86 0.000795 0.020327
GO:0046685 response to arsenic-containing substance 4.17% (3/72) 4.08 0.000757 0.020404
GO:0043455 regulation of secondary metabolic process 8.33% (6/72) 2.46 0.000782 0.020518
GO:0071462 cellular response to water stimulus 5.56% (4/72) 3.22 0.000921 0.022408
GO:0071496 cellular response to external stimulus 11.11% (8/72) 1.99 0.000918 0.02287
GO:0071836 nectar secretion 2.78% (2/72) 5.38 0.001057 0.022904
GO:0009944 polarity specification of adaxial/abaxial axis 4.17% (3/72) 3.9 0.001094 0.023201
GO:0009888 tissue development 12.5% (9/72) 1.81 0.001048 0.02323
GO:0045471 response to ethanol 4.17% (3/72) 3.89 0.001123 0.023324
GO:0009956 radial pattern formation 4.17% (3/72) 3.93 0.001037 0.023493
GO:0010439 regulation of glucosinolate biosynthetic process 4.17% (3/72) 3.93 0.001037 0.023493
GO:0009567 double fertilization forming a zygote and endosperm 4.17% (3/72) 3.93 0.001037 0.023493
GO:0009409 response to cold 13.89% (10/72) 1.66 0.001167 0.023744
GO:0046688 response to copper ion 4.17% (3/72) 3.81 0.001308 0.025577
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 5.56% (4/72) 3.09 0.001285 0.02563
GO:0010496 intercellular transport 4.17% (3/72) 3.72 0.001584 0.0298
GO:0071229 cellular response to acid chemical 5.56% (4/72) 3.01 0.001563 0.029972
GO:0043130 ubiquitin binding 4.17% (3/72) 3.63 0.001894 0.034965
GO:0009705 plant-type vacuole membrane 6.94% (5/72) 2.5 0.001965 0.035623
GO:0006979 response to oxidative stress 12.5% (9/72) 1.63 0.002404 0.036871
GO:0009566 fertilization 4.17% (3/72) 3.51 0.002377 0.037037
GO:0010029 regulation of seed germination 6.94% (5/72) 2.44 0.002304 0.037048
GO:0043621 protein self-association 6.94% (5/72) 2.44 0.002344 0.037094
GO:0031667 response to nutrient levels 11.11% (8/72) 1.79 0.002134 0.037335
GO:0090627 plant epidermal cell differentiation 5.56% (4/72) 2.86 0.002295 0.037506
GO:0048582 positive regulation of post-embryonic development 6.94% (5/72) 2.47 0.002111 0.037581
GO:0010227 floral organ abscission 4.17% (3/72) 3.55 0.002194 0.037708
GO:0010017 red or far-red light signaling pathway 4.17% (3/72) 3.54 0.002239 0.037831
GO:0071489 cellular response to red or far red light 4.17% (3/72) 3.53 0.002284 0.037959
GO:0043562 cellular response to nitrogen levels 4.17% (3/72) 3.47 0.002571 0.038832
GO:0006970 response to osmotic stress 15.28% (11/72) 1.4 0.002703 0.040218
GO:0032182 ubiquitin-like protein binding 4.17% (3/72) 3.43 0.002773 0.040659
GO:0032875 regulation of DNA endoreduplication 2.78% (2/72) 4.66 0.002877 0.041575
GO:0009628 response to abiotic stimulus 33.33% (24/72) 0.8 0.00309 0.043394
GO:0009753 response to jasmonic acid 8.33% (6/72) 2.07 0.003052 0.043466
GO:1900140 regulation of seedling development 6.94% (5/72) 2.31 0.003414 0.047269
GO:0006457 protein folding 5.56% (4/72) 2.68 0.003597 0.048468
GO:0048317 seed morphogenesis 2.78% (2/72) 4.5 0.003573 0.048798
GO:0004869 cysteine-type endopeptidase inhibitor activity 2.78% (2/72) 4.47 0.003721 0.048808
GO:0098810 neurotransmitter reuptake 1.39% (1/72) 8.08 0.003681 0.048928
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_219 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_2 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_60 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_87 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_129 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (72) (download table)

InterPro Domains

GO Terms

Family Terms