Coexpression cluster: Cluster_19 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0038198 auxin receptor activity 3.16% (5/158) 6.57 0.0 3e-06
GO:0031670 cellular response to nutrient 4.43% (7/158) 4.83 0.0 7e-06
GO:0045013 carbon catabolite repression of transcription 3.16% (5/158) 5.69 0.0 1.1e-05
GO:0061984 catabolite repression 3.16% (5/158) 5.69 0.0 1.1e-05
GO:0061985 carbon catabolite repression 3.16% (5/158) 5.69 0.0 1.1e-05
GO:0010011 auxin binding 3.16% (5/158) 5.95 0.0 1.2e-05
GO:0045014 carbon catabolite repression of transcription by glucose 3.16% (5/158) 5.81 0.0 1.2e-05
GO:0061986 negative regulation of transcription by glucose 3.16% (5/158) 5.81 0.0 1.2e-05
GO:0046015 regulation of transcription by glucose 3.16% (5/158) 5.75 0.0 1.3e-05
GO:0045990 carbon catabolite regulation of transcription 3.8% (6/158) 4.89 0.0 1.3e-05
GO:0000822 inositol hexakisphosphate binding 3.16% (5/158) 5.41 0.0 2.4e-05
GO:0071249 cellular response to nitrate 3.16% (5/158) 5.32 0.0 3.1e-05
GO:0007584 response to nutrient 5.7% (9/158) 3.28 0.0 8.2e-05
GO:1902455 negative regulation of stem cell population maintenance 1.9% (3/158) 6.95 1e-06 0.000215
GO:1902170 cellular response to reactive nitrogen species 3.16% (5/158) 4.54 2e-06 0.000389
GO:0009267 cellular response to starvation 8.23% (13/158) 2.27 4e-06 0.000533
GO:1902679 negative regulation of RNA biosynthetic process 11.39% (18/158) 1.79 5e-06 0.000593
GO:1903507 negative regulation of nucleic acid-templated transcription 11.39% (18/158) 1.79 5e-06 0.000593
GO:0045892 negative regulation of DNA-templated transcription 11.39% (18/158) 1.8 5e-06 0.000627
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 12.66% (20/158) 1.66 6e-06 0.000638
GO:0009791 post-embryonic development 15.19% (24/158) 1.48 5e-06 0.000646
GO:0051253 negative regulation of RNA metabolic process 12.03% (19/158) 1.71 6e-06 0.00065
GO:0031669 cellular response to nutrient levels 8.86% (14/158) 2.08 7e-06 0.000701
GO:0042594 response to starvation 8.86% (14/158) 2.04 9e-06 0.000869
GO:0031327 negative regulation of cellular biosynthetic process 12.66% (20/158) 1.57 1.5e-05 0.001365
GO:0008825 cyclopropane-fatty-acyl-phospholipid synthase activity 1.27% (2/158) 7.95 1.6e-05 0.001465
GO:0009890 negative regulation of biosynthetic process 12.66% (20/158) 1.53 2.1e-05 0.001737
GO:0010558 negative regulation of macromolecule biosynthetic process 12.03% (19/158) 1.59 2e-05 0.001745
GO:0048443 stamen development 3.16% (5/158) 3.88 2.4e-05 0.001829
GO:0031668 cellular response to extracellular stimulus 9.49% (15/158) 1.82 2.5e-05 0.001838
GO:0031324 negative regulation of cellular metabolic process 15.19% (24/158) 1.35 2.3e-05 0.001847
GO:0009892 negative regulation of metabolic process 18.35% (29/158) 1.19 2.4e-05 0.001874
GO:0043178 alcohol binding 3.16% (5/158) 3.81 3e-05 0.002152
GO:0042562 hormone binding 3.16% (5/158) 3.8 3.2e-05 0.002206
GO:0007154 cell communication 10.76% (17/158) 1.65 3.4e-05 0.002278
GO:0034040 ATPase-coupled lipid transmembrane transporter activity 1.9% (3/158) 5.45 4.2e-05 0.00268
GO:0071496 cellular response to external stimulus 9.49% (15/158) 1.76 4.2e-05 0.002749
GO:0010562 positive regulation of phosphorus metabolic process 5.06% (8/158) 2.63 5e-05 0.002877
GO:0045937 positive regulation of phosphate metabolic process 5.06% (8/158) 2.63 5e-05 0.002877
GO:0071767 mycolic acid metabolic process 1.27% (2/158) 7.37 4.9e-05 0.002922
GO:0071768 mycolic acid biosynthetic process 1.27% (2/158) 7.37 4.9e-05 0.002922
GO:0031667 response to nutrient levels 10.13% (16/158) 1.66 5.3e-05 0.00295
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 3.16% (5/158) 3.63 5.6e-05 0.003053
GO:0045742 positive regulation of epidermal growth factor receptor signaling pathway 1.9% (3/158) 5.29 6e-05 0.003121
GO:1901186 positive regulation of ERBB signaling pathway 1.9% (3/158) 5.29 6e-05 0.003121
GO:0010605 negative regulation of macromolecule metabolic process 16.46% (26/158) 1.18 7.6e-05 0.00386
GO:0071241 cellular response to inorganic substance 5.06% (8/158) 2.54 7.8e-05 0.003914
GO:0033135 regulation of peptidyl-serine phosphorylation 2.53% (4/158) 4.07 9.8e-05 0.004049
GO:0004751 ribose-5-phosphate isomerase activity 1.27% (2/158) 6.95 9.7e-05 0.004059
GO:0046109 uridine biosynthetic process 1.27% (2/158) 6.95 9.7e-05 0.004059
GO:0046132 pyrimidine ribonucleoside biosynthetic process 1.27% (2/158) 6.95 9.7e-05 0.004059
GO:0062078 TSC1-TSC2 complex binding 1.27% (2/158) 6.95 9.7e-05 0.004059
GO:0051172 negative regulation of nitrogen compound metabolic process 14.56% (23/158) 1.27 8.4e-05 0.004089
GO:0009637 response to blue light 5.06% (8/158) 2.52 8.7e-05 0.004153
GO:1901698 response to nitrogen compound 12.66% (20/158) 1.37 9.3e-05 0.004203
GO:0016036 cellular response to phosphate starvation 4.43% (7/158) 2.75 9e-05 0.004213
GO:0010152 pollen maturation 3.16% (5/158) 3.48 9.2e-05 0.004228
GO:0009991 response to extracellular stimulus 10.76% (17/158) 1.51 0.000109 0.004389
GO:0042327 positive regulation of phosphorylation 4.43% (7/158) 2.7 0.000111 0.00442
GO:0008281 sulfonylurea receptor activity 1.9% (3/158) 4.95 0.000123 0.004662
GO:0010290 chlorophyll catabolite transmembrane transporter activity 1.9% (3/158) 4.95 0.000123 0.004662
GO:0071715 icosanoid transport 1.9% (3/158) 4.95 0.000123 0.004662
GO:0048523 negative regulation of cellular process 21.52% (34/158) 0.94 0.000135 0.005028
GO:0033147 negative regulation of intracellular estrogen receptor signaling pathway 1.9% (3/158) 4.89 0.00014 0.005039
GO:0033620 Mei2 nuclear dot complex 1.9% (3/158) 4.89 0.00014 0.005039
GO:0030015 CCR4-NOT core complex 1.9% (3/158) 4.84 0.000157 0.005593
GO:0009052 pentose-phosphate shunt, non-oxidative branch 1.27% (2/158) 6.63 0.000161 0.00564
GO:0015721 bile acid and bile salt transport 1.9% (3/158) 4.78 0.000176 0.005915
GO:0005154 epidermal growth factor receptor binding 1.9% (3/158) 4.78 0.000176 0.005915
GO:0015431 ABC-type glutathione S-conjugate transporter activity 1.9% (3/158) 4.78 0.000176 0.005915
GO:2000036 regulation of stem cell population maintenance 1.9% (3/158) 4.73 0.000197 0.006512
GO:0080022 primary root development 3.8% (6/158) 2.81 0.000235 0.007649
GO:0038023 signaling receptor activity 6.96% (11/158) 1.83 0.000297 0.009407
GO:0033138 positive regulation of peptidyl-serine phosphorylation 1.9% (3/158) 4.54 0.000295 0.009477
GO:0005774 vacuolar membrane 12.03% (19/158) 1.28 0.000316 0.009613
GO:0019005 SCF ubiquitin ligase complex 3.16% (5/158) 3.1 0.00031 0.009696
GO:0009734 auxin-activated signaling pathway 5.06% (8/158) 2.25 0.000314 0.009697
GO:0140110 transcription regulator activity 12.66% (20/158) 1.23 0.000363 0.010774
GO:0010167 response to nitrate 3.16% (5/158) 3.05 0.000363 0.010907
GO:0070851 growth factor receptor binding 1.9% (3/158) 4.41 0.000386 0.01131
GO:0006355 regulation of DNA-templated transcription 17.72% (28/158) 0.98 0.000398 0.011516
GO:2001141 regulation of RNA biosynthetic process 17.72% (28/158) 0.97 0.00042 0.011726
GO:0033144 negative regulation of intracellular steroid hormone receptor signaling pathway 1.9% (3/158) 4.37 0.000419 0.011857
GO:1903506 regulation of nucleic acid-templated transcription 17.72% (28/158) 0.97 0.000416 0.011904
GO:0060089 molecular transducer activity 6.96% (11/158) 1.76 0.000455 0.012559
GO:0033146 regulation of intracellular estrogen receptor signaling pathway 1.9% (3/158) 4.29 0.000493 0.01344
GO:0046134 pyrimidine nucleoside biosynthetic process 1.27% (2/158) 5.78 0.000574 0.01547
GO:0090057 root radial pattern formation 1.9% (3/158) 4.18 0.000617 0.016451
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 1.9% (3/158) 4.11 0.00071 0.01872
GO:0048519 negative regulation of biological process 25.32% (40/158) 0.72 0.000764 0.019686
GO:0030374 nuclear receptor coactivator activity 1.9% (3/158) 4.08 0.00076 0.019808
GO:0007165 signal transduction 18.99% (30/158) 0.86 0.000875 0.02094
GO:0051252 regulation of RNA metabolic process 18.35% (29/158) 0.89 0.000822 0.020959
GO:0038183 bile acid signaling pathway 1.27% (2/158) 5.49 0.000872 0.021086
GO:0046108 uridine metabolic process 1.27% (2/158) 5.49 0.000872 0.021086
GO:0046131 pyrimidine ribonucleoside metabolic process 1.27% (2/158) 5.49 0.000872 0.021086
GO:0034497 protein localization to phagophore assembly site 1.27% (2/158) 5.49 0.000872 0.021086
GO:0048577 negative regulation of short-day photoperiodism, flowering 1.9% (3/158) 3.98 0.000922 0.021634
GO:0019221 cytokine-mediated signaling pathway 1.9% (3/158) 3.98 0.000922 0.021634
GO:0010083 regulation of vegetative meristem growth 1.9% (3/158) 4.01 0.000866 0.021842
GO:0050404 zeatin O-beta-D-xylosyltransferase activity 1.9% (3/158) 3.95 0.000981 0.02278
GO:0048641 regulation of skeletal muscle tissue development 1.27% (2/158) 5.37 0.001043 0.023538
GO:0048643 positive regulation of skeletal muscle tissue development 1.27% (2/158) 5.37 0.001043 0.023538
GO:1901863 positive regulation of muscle tissue development 1.27% (2/158) 5.37 0.001043 0.023538
GO:1901861 regulation of muscle tissue development 1.27% (2/158) 5.25 0.00123 0.026471
GO:0042455 ribonucleoside biosynthetic process 1.27% (2/158) 5.25 0.00123 0.026471
GO:0004143 diacylglycerol kinase activity 1.27% (2/158) 5.25 0.00123 0.026471
GO:0010557 positive regulation of macromolecule biosynthetic process 12.03% (19/158) 1.12 0.001216 0.026918
GO:0010508 positive regulation of autophagy 2.53% (4/158) 3.12 0.001214 0.027131
GO:0045893 positive regulation of DNA-templated transcription 10.76% (17/158) 1.19 0.001337 0.02851
GO:1901700 response to oxygen-containing compound 25.95% (41/158) 0.67 0.001362 0.028784
GO:0071716 leukotriene transport 1.27% (2/158) 5.14 0.001431 0.029976
GO:1902680 positive regulation of RNA biosynthetic process 10.76% (17/158) 1.17 0.001491 0.030153
GO:1903508 positive regulation of nucleic acid-templated transcription 10.76% (17/158) 1.18 0.001474 0.030334
GO:0019219 regulation of nucleobase-containing compound metabolic process 18.99% (30/158) 0.82 0.001461 0.03034
GO:0042752 regulation of circadian rhythm 3.16% (5/158) 2.6 0.001488 0.030361
GO:0050896 response to stimulus 50.63% (80/158) 0.39 0.001542 0.030395
GO:0048579 negative regulation of long-day photoperiodism, flowering 2.53% (4/158) 3.02 0.001559 0.030479
GO:0010311 lateral root formation 3.8% (6/158) 2.29 0.001541 0.03063
GO:0048586 regulation of long-day photoperiodism, flowering 3.16% (5/158) 2.58 0.001587 0.030765
GO:0010468 regulation of gene expression 21.52% (34/158) 0.75 0.001539 0.030869
GO:0009701 isoflavonoid phytoalexin biosynthetic process 1.27% (2/158) 5.04 0.001647 0.030908
GO:0030746 isoflavone 4'-O-methyltransferase activity 1.27% (2/158) 5.04 0.001647 0.030908
GO:0046289 isoflavonoid phytoalexin metabolic process 1.27% (2/158) 5.04 0.001647 0.030908
GO:0048439 flower morphogenesis 1.9% (3/158) 3.7 0.001616 0.031067
GO:0008559 ABC-type xenobiotic transporter activity 1.9% (3/158) 3.68 0.001699 0.031629
GO:0031326 regulation of cellular biosynthetic process 20.89% (33/158) 0.75 0.001734 0.03204
GO:1901682 sulfur compound transmembrane transporter activity 2.53% (4/158) 2.97 0.001755 0.032159
GO:0090043 regulation of tubulin deacetylation 1.27% (2/158) 4.95 0.001877 0.033617
GO:0044539 long-chain fatty acid import into cell 1.27% (2/158) 4.95 0.001877 0.033617
GO:0140354 lipid import into cell 1.27% (2/158) 4.95 0.001877 0.033617
GO:0032922 circadian regulation of gene expression 2.53% (4/158) 2.91 0.002079 0.036949
GO:0042182 ketone catabolic process 1.9% (3/158) 3.54 0.002254 0.03975
GO:0043539 protein serine/threonine kinase activator activity 1.27% (2/158) 4.78 0.002381 0.040181
GO:0009163 nucleoside biosynthetic process 1.27% (2/158) 4.78 0.002381 0.040181
GO:0034404 nucleobase-containing small molecule biosynthetic process 1.27% (2/158) 4.78 0.002381 0.040181
GO:0016160 amylase activity 1.27% (2/158) 4.78 0.002381 0.040181
GO:0034045 phagophore assembly site membrane 1.27% (2/158) 4.78 0.002381 0.040181
GO:0031323 regulation of cellular metabolic process 25.32% (40/158) 0.63 0.002459 0.041207
GO:0042325 regulation of phosphorylation 5.06% (8/158) 1.79 0.002378 0.041632
GO:0010556 regulation of macromolecule biosynthetic process 18.35% (29/158) 0.78 0.002539 0.04224
GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses 1.27% (2/158) 4.7 0.002654 0.043843
GO:0042058 regulation of epidermal growth factor receptor signaling pathway 1.9% (3/158) 3.43 0.002792 0.045494
GO:0031325 positive regulation of cellular metabolic process 15.19% (24/158) 0.88 0.002779 0.045587
GO:0010506 regulation of autophagy 3.16% (5/158) 2.38 0.002853 0.046155
GO:0009889 regulation of biosynthetic process 20.89% (33/158) 0.71 0.002917 0.046557
GO:0001934 positive regulation of protein phosphorylation 3.16% (5/158) 2.37 0.002957 0.04656
GO:0015909 long-chain fatty acid transport 1.27% (2/158) 4.63 0.002941 0.046615
GO:0030007 cellular potassium ion homeostasis 1.9% (3/158) 3.41 0.002909 0.046742
GO:0048831 regulation of shoot system development 5.7% (9/158) 1.6 0.003117 0.048752
GO:0007623 circadian rhythm 5.06% (8/158) 1.66 0.004061 0.049103
GO:0003353 positive regulation of cilium movement 0.63% (1/158) 7.95 0.004042 0.049134
GO:0003356 regulation of cilium beat frequency 0.63% (1/158) 7.95 0.004042 0.049134
GO:0005879 axonemal microtubule 0.63% (1/158) 7.95 0.004042 0.049134
GO:0018094 protein polyglycylation 0.63% (1/158) 7.95 0.004042 0.049134
GO:0018095 protein polyglutamylation 0.63% (1/158) 7.95 0.004042 0.049134
GO:0060295 regulation of cilium movement involved in cell motility 0.63% (1/158) 7.95 0.004042 0.049134
GO:0060296 regulation of cilium beat frequency involved in ciliary motility 0.63% (1/158) 7.95 0.004042 0.049134
GO:0097540 axonemal central pair 0.63% (1/158) 7.95 0.004042 0.049134
GO:0097545 axonemal outer doublet 0.63% (1/158) 7.95 0.004042 0.049134
GO:1901207 regulation of heart looping 0.63% (1/158) 7.95 0.004042 0.049134
GO:1901317 regulation of flagellated sperm motility 0.63% (1/158) 7.95 0.004042 0.049134
GO:1902019 regulation of cilium-dependent cell motility 0.63% (1/158) 7.95 0.004042 0.049134
GO:1902093 positive regulation of flagellated sperm motility 0.63% (1/158) 7.95 0.004042 0.049134
GO:2000155 positive regulation of cilium-dependent cell motility 0.63% (1/158) 7.95 0.004042 0.049134
GO:0042556 eukaryotic elongation factor-2 kinase regulator activity 0.63% (1/158) 7.95 0.004042 0.049134
GO:0042557 eukaryotic elongation factor-2 kinase activator activity 0.63% (1/158) 7.95 0.004042 0.049134
GO:0019152 acetoin dehydrogenase activity 0.63% (1/158) 7.95 0.004042 0.049134
GO:0052588 diacetyl reductase ((S)-acetoin forming) activity 0.63% (1/158) 7.95 0.004042 0.049134
GO:0031036 myosin II filament assembly 0.63% (1/158) 7.95 0.004042 0.049134
GO:0002576 platelet degranulation 0.63% (1/158) 7.95 0.004042 0.049134
GO:0030213 hyaluronan biosynthetic process 0.63% (1/158) 7.95 0.004042 0.049134
GO:0032310 prostaglandin secretion 0.63% (1/158) 7.95 0.004042 0.049134
GO:0070731 cGMP transport 0.63% (1/158) 7.95 0.004042 0.049134
GO:0140353 lipid export from cell 0.63% (1/158) 7.95 0.004042 0.049134
GO:0140357 heme export from vacuole to cytoplasm 0.63% (1/158) 7.95 0.004042 0.049134
GO:0004339 glucan 1,4-alpha-glucosidase activity 0.63% (1/158) 7.95 0.004042 0.049134
GO:0043895 cyclomaltodextrin glucanotransferase activity 0.63% (1/158) 7.95 0.004042 0.049134
GO:0046958 nonassociative learning 0.63% (1/158) 7.95 0.004042 0.049134
GO:0046959 habituation 0.63% (1/158) 7.95 0.004042 0.049134
GO:0099147 extrinsic component of postsynaptic density membrane 0.63% (1/158) 7.95 0.004042 0.049134
GO:1900452 regulation of long-term synaptic depression 0.63% (1/158) 7.95 0.004042 0.049134
GO:0001932 regulation of protein phosphorylation 4.43% (7/158) 1.81 0.004106 0.049146
GO:0035252 UDP-xylosyltransferase activity 1.9% (3/158) 3.23 0.004093 0.049237
GO:1901699 cellular response to nitrogen compound 4.43% (7/158) 1.87 0.003242 0.049711
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_44 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_79 0.014 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_88 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_122 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_177 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_214 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_8 0.013 Orthogroups with 8 Potato genotypes Compare
Sequences (158) (download table)

InterPro Domains

GO Terms

Family Terms