Coexpression cluster: Cluster_164 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0050793 regulation of developmental process 32.0% (24/75) 1.53 1e-06 0.000481
GO:0051239 regulation of multicellular organismal process 26.67% (20/75) 1.73 1e-06 0.000511
GO:1905428 regulation of plant organ formation 8.0% (6/75) 4.36 1e-06 0.000514
GO:0048225 suberin network 4.0% (3/75) 7.29 1e-06 0.000547
GO:2000032 regulation of secondary shoot formation 6.67% (5/75) 4.62 2e-06 0.000671
GO:0032502 developmental process 54.67% (41/75) 1.02 0.0 0.000781
GO:0060688 regulation of morphogenesis of a branching structure 6.67% (5/75) 4.51 3e-06 0.000824
GO:0009628 response to abiotic stimulus 41.33% (31/75) 1.11 8e-06 0.002032
GO:0048583 regulation of response to stimulus 33.33% (25/75) 1.3 1e-05 0.002246
GO:0009719 response to endogenous stimulus 30.67% (23/75) 1.35 1.4e-05 0.002404
GO:0009725 response to hormone 29.33% (22/75) 1.39 1.6e-05 0.002554
GO:0008509 anion transmembrane transporter activity 10.67% (8/75) 2.87 1.4e-05 0.002611
GO:0048585 negative regulation of response to stimulus 20.0% (15/75) 1.81 1.8e-05 0.002618
GO:0009314 response to radiation 24.0% (18/75) 1.62 1.4e-05 0.002869
GO:0085042 periarbuscular membrane 4.0% (3/75) 5.75 2.4e-05 0.003042
GO:0007034 vacuolar transport 8.0% (6/75) 3.4 2.3e-05 0.003159
GO:0070542 response to fatty acid 12.0% (9/75) 2.5 3e-05 0.003446
GO:0009416 response to light stimulus 22.67% (17/75) 1.6 3e-05 0.003545
GO:0031090 organelle membrane 30.67% (23/75) 1.26 4.2e-05 0.004476
GO:2000026 regulation of multicellular organismal development 18.67% (14/75) 1.76 5.3e-05 0.005367
GO:0022603 regulation of anatomical structure morphogenesis 13.33% (10/75) 2.21 5.6e-05 0.005444
GO:0033644 host cell membrane 4.0% (3/75) 5.18 7.9e-05 0.006449
GO:0055078 sodium ion homeostasis 4.0% (3/75) 5.18 7.9e-05 0.006449
GO:0016021 integral component of membrane 22.67% (17/75) 1.5 7.4e-05 0.006533
GO:0051130 positive regulation of cellular component organization 10.67% (8/75) 2.5 8.5e-05 0.006615
GO:0033993 response to lipid 24.0% (18/75) 1.44 7.2e-05 0.006696
GO:0008514 organic anion transmembrane transporter activity 8.0% (6/75) 3.03 9.7e-05 0.007307
GO:0006820 anion transport 10.67% (8/75) 2.44 0.000114 0.008023
GO:0009753 response to jasmonic acid 10.67% (8/75) 2.43 0.00012 0.008108
GO:0071702 organic substance transport 18.67% (14/75) 1.65 0.000125 0.008229
GO:0003700 DNA-binding transcription factor activity 16.0% (12/75) 1.84 0.000114 0.008289
GO:0050789 regulation of biological process 54.67% (41/75) 0.7 0.000136 0.008627
GO:0032501 multicellular organismal process 36.0% (27/75) 1.0 0.000162 0.010002
GO:0048226 Casparian strip 5.33% (4/75) 3.85 0.00018 0.010771
GO:0098588 bounding membrane of organelle 21.33% (16/75) 1.45 0.000191 0.011114
GO:0065007 biological regulation 57.33% (43/75) 0.64 0.000218 0.01235
GO:0055085 transmembrane transport 14.67% (11/75) 1.83 0.000243 0.013357
GO:0055075 potassium ion homeostasis 5.33% (4/75) 3.69 0.000268 0.014005
GO:0097305 response to alcohol 16.0% (12/75) 1.71 0.000265 0.014185
GO:0015849 organic acid transport 8.0% (6/75) 2.74 0.000283 0.014383
GO:0022804 active transmembrane transporter activity 10.67% (8/75) 2.24 0.000292 0.014477
GO:0048869 cellular developmental process 20.0% (15/75) 1.42 0.000378 0.014526
GO:0048580 regulation of post-embryonic development 14.67% (11/75) 1.75 0.000393 0.014556
GO:0000976 transcription cis-regulatory region binding 16.0% (12/75) 1.69 0.000302 0.014654
GO:0009737 response to abscisic acid 14.67% (11/75) 1.76 0.000376 0.014724
GO:0001067 transcription regulatory region nucleic acid binding 16.0% (12/75) 1.69 0.000313 0.014789
GO:0015075 ion transmembrane transporter activity 12.0% (9/75) 2.0 0.000407 0.014792
GO:1902074 response to salt 5.33% (4/75) 3.55 0.000393 0.014799
GO:0006970 response to osmotic stress 17.33% (13/75) 1.59 0.000336 0.014863
GO:0006892 post-Golgi vesicle-mediated transport 5.33% (4/75) 3.6 0.000345 0.014935
GO:0031224 intrinsic component of membrane 22.67% (17/75) 1.3 0.000374 0.01494
GO:0005112 Notch binding 2.67% (2/75) 6.22 0.000326 0.015062
GO:2000243 positive regulation of reproductive process 8.0% (6/75) 2.7 0.000334 0.015125
GO:1990837 sequence-specific double-stranded DNA binding 16.0% (12/75) 1.66 0.000372 0.015153
GO:0051093 negative regulation of developmental process 12.0% (9/75) 2.02 0.000359 0.015234
GO:0034498 early endosome to Golgi transport 2.67% (2/75) 6.03 0.000428 0.015294
GO:0009909 regulation of flower development 9.33% (7/75) 2.4 0.00037 0.015375
GO:0005775 vacuolar lumen 4.0% (3/75) 4.34 0.000448 0.015724
GO:0009648 photoperiodism 6.67% (5/75) 2.97 0.000461 0.015914
GO:0015711 organic anion transport 8.0% (6/75) 2.6 0.000474 0.016092
GO:0016020 membrane 46.67% (35/75) 0.73 0.000504 0.016285
GO:0033643 host cell part 4.0% (3/75) 4.29 0.000501 0.016453
GO:0036377 arbuscular mycorrhizal association 5.33% (4/75) 3.43 0.000533 0.016673
GO:0090693 plant organ senescence 9.33% (7/75) 2.33 0.000501 0.016702
GO:0048831 regulation of shoot system development 9.33% (7/75) 2.31 0.000526 0.016712
GO:2000241 regulation of reproductive process 14.67% (11/75) 1.69 0.000543 0.016755
GO:0010093 specification of floral organ identity 4.0% (3/75) 4.24 0.000558 0.016957
GO:1901700 response to oxygen-containing compound 32.0% (24/75) 0.97 0.000603 0.017054
GO:0005215 transporter activity 14.67% (11/75) 1.68 0.000575 0.017201
GO:0099402 plant organ development 16.0% (12/75) 1.58 0.000603 0.017284
GO:0048519 negative regulation of biological process 30.67% (23/75) 1.0 0.00062 0.017291
GO:0090701 specification of plant organ identity 4.0% (3/75) 4.2 0.000598 0.017399
GO:0031323 regulation of cellular metabolic process 32.0% (24/75) 0.97 0.000592 0.017468
GO:0018995 host cellular component 4.0% (3/75) 4.17 0.000641 0.017614
GO:1901002 positive regulation of response to salt stress 5.33% (4/75) 3.35 0.000655 0.017783
GO:0140110 transcription regulator activity 16.0% (12/75) 1.56 0.00067 0.017931
GO:0010345 suberin biosynthetic process 5.33% (4/75) 3.34 0.00068 0.017964
GO:0050801 ion homeostasis 10.67% (8/75) 2.03 0.000749 0.019046
GO:0048193 Golgi vesicle transport 6.67% (5/75) 2.82 0.000742 0.019111
GO:0080090 regulation of primary metabolic process 30.67% (23/75) 0.98 0.000735 0.01918
GO:0003690 double-stranded DNA binding 16.0% (12/75) 1.54 0.000764 0.019192
GO:0009653 anatomical structure morphogenesis 21.33% (16/75) 1.26 0.000796 0.019763
GO:0010208 pollen wall assembly 5.33% (4/75) 3.25 0.000854 0.020928
GO:0090148 membrane fission 2.67% (2/75) 5.44 0.000976 0.023355
GO:0055080 cation homeostasis 9.33% (7/75) 2.16 0.00097 0.023496
GO:0050794 regulation of cellular process 46.67% (35/75) 0.68 0.001007 0.023563
GO:0005789 endoplasmic reticulum membrane 10.67% (8/75) 1.97 0.001001 0.023683
GO:0005515 protein binding 56.0% (42/75) 0.56 0.001075 0.024859
GO:0000281 mitotic cytokinesis 4.0% (3/75) 3.88 0.001136 0.025969
GO:0019222 regulation of metabolic process 34.67% (26/75) 0.85 0.001188 0.026575
GO:0010033 response to organic substance 33.33% (25/75) 0.87 0.001203 0.026612
GO:0008150 biological_process 78.67% (59/75) 0.35 0.001185 0.026783
GO:0009944 polarity specification of adaxial/abaxial axis 4.0% (3/75) 3.84 0.001231 0.026933
GO:0007623 circadian rhythm 8.0% (6/75) 2.32 0.001291 0.027957
GO:0048518 positive regulation of biological process 32.0% (24/75) 0.89 0.001359 0.029114
GO:0010243 response to organonitrogen compound 13.33% (10/75) 1.62 0.001431 0.029414
GO:0090440 abscisic acid transmembrane transporter activity 2.67% (2/75) 5.17 0.001426 0.029614
GO:0022857 transmembrane transporter activity 13.33% (10/75) 1.62 0.001425 0.029889
GO:0055065 metal ion homeostasis 8.0% (6/75) 2.3 0.001422 0.030149
GO:0043565 sequence-specific DNA binding 16.0% (12/75) 1.41 0.001659 0.032161
GO:0098771 inorganic ion homeostasis 9.33% (7/75) 2.03 0.001658 0.03245
GO:0010150 leaf senescence 8.0% (6/75) 2.26 0.0016 0.032557
GO:0031326 regulation of cellular biosynthetic process 25.33% (19/75) 1.03 0.001633 0.03259
GO:0009610 response to symbiotic fungus 5.33% (4/75) 2.99 0.001651 0.03262
GO:0009299 mRNA transcription 2.67% (2/75) 5.03 0.001736 0.032707
GO:0045765 regulation of angiogenesis 2.67% (2/75) 5.03 0.001736 0.032707
GO:0023051 regulation of signaling 18.67% (14/75) 1.26 0.001769 0.03273
GO:0010158 abaxial cell fate specification 2.67% (2/75) 5.07 0.001629 0.032829
GO:0048364 root development 10.67% (8/75) 1.84 0.001765 0.032945
GO:0071470 cellular response to osmotic stress 5.33% (4/75) 2.98 0.001721 0.03304
GO:1901342 regulation of vasculature development 2.67% (2/75) 4.98 0.001845 0.033834
GO:0009987 cellular process 69.33% (52/75) 0.41 0.001919 0.03396
GO:0009751 response to salicylic acid 9.33% (7/75) 1.99 0.001891 0.034047
GO:0080053 response to phenylalanine 2.67% (2/75) 4.94 0.001958 0.034063
GO:0051234 establishment of localization 24.0% (18/75) 1.05 0.001949 0.034188
GO:2000696 regulation of epithelial cell differentiation involved in kidney development 1.33% (1/75) 9.03 0.001919 0.034251
GO:0051171 regulation of nitrogen compound metabolic process 28.0% (21/75) 0.94 0.001889 0.034328
GO:0048511 rhythmic process 8.0% (6/75) 2.19 0.00208 0.035271
GO:0048856 anatomical structure development 34.67% (26/75) 0.8 0.00205 0.035353
GO:0046580 negative regulation of Ras protein signal transduction 2.67% (2/75) 4.9 0.002075 0.035476
GO:0006811 ion transport 12.0% (9/75) 1.65 0.002202 0.036726
GO:0051058 negative regulation of small GTPase mediated signal transduction 2.67% (2/75) 4.86 0.002194 0.036896
GO:0009889 regulation of biosynthetic process 25.33% (19/75) 0.99 0.002374 0.039282
GO:0015665 alcohol transmembrane transporter activity 2.67% (2/75) 4.78 0.002442 0.040076
GO:0080052 response to histidine 2.67% (2/75) 4.74 0.002571 0.041852
GO:1902183 regulation of shoot apical meristem development 2.67% (2/75) 4.7 0.002703 0.043651
GO:0010927 cellular component assembly involved in morphogenesis 5.33% (4/75) 2.79 0.002728 0.043706
GO:0048573 photoperiodism, flowering 5.33% (4/75) 2.79 0.00276 0.043883
GO:0009608 response to symbiont 5.33% (4/75) 2.78 0.002793 0.044062
GO:0030154 cell differentiation 13.33% (10/75) 1.49 0.002815 0.044069
GO:0009651 response to salt stress 13.33% (10/75) 1.49 0.002859 0.044414
GO:0140359 ABC-type transporter activity 4.0% (3/75) 3.41 0.002887 0.044503
GO:0006810 transport 22.67% (17/75) 1.03 0.003058 0.046104
GO:0009968 negative regulation of signal transduction 10.67% (8/75) 1.71 0.003018 0.046171
GO:0015291 secondary active transmembrane transporter activity 6.67% (5/75) 2.35 0.00305 0.046312
GO:0120036 plasma membrane bounded cell projection organization 5.33% (4/75) 2.74 0.003102 0.046409
GO:0048584 positive regulation of response to stimulus 16.0% (12/75) 1.3 0.003128 0.046466
GO:0051649 establishment of localization in cell 12.0% (9/75) 1.57 0.003267 0.047491
GO:0048545 response to steroid hormone 4.0% (3/75) 3.35 0.003231 0.047642
GO:0043201 response to leucine 2.67% (2/75) 4.57 0.003262 0.047753
GO:0005053 peroxisome matrix targeting signal-2 binding 1.33% (1/75) 8.03 0.003834 0.049069
GO:0048263 determination of dorsal identity 1.33% (1/75) 8.03 0.003834 0.049069
GO:0015184 L-cystine transmembrane transporter activity 1.33% (1/75) 8.03 0.003834 0.049069
GO:0015811 L-cystine transport 1.33% (1/75) 8.03 0.003834 0.049069
GO:0010296 prenylcysteine methylesterase activity 1.33% (1/75) 8.03 0.003834 0.049069
GO:0033818 beta-ketoacyl-acyl-carrier-protein synthase III activity 1.33% (1/75) 8.03 0.003834 0.049069
GO:0004676 3-phosphoinositide-dependent protein kinase activity 1.33% (1/75) 8.03 0.003834 0.049069
GO:0009083 branched-chain amino acid catabolic process 2.67% (2/75) 4.53 0.003409 0.049204
GO:0042398 cellular modified amino acid biosynthetic process 2.67% (2/75) 4.44 0.00387 0.049222
GO:1901698 response to nitrogen compound 13.33% (10/75) 1.45 0.003443 0.049335
GO:0009740 gibberellic acid mediated signaling pathway 4.0% (3/75) 3.25 0.003925 0.049608
GO:0009744 response to sucrose 5.33% (4/75) 2.69 0.003548 0.049794
GO:0050896 response to stimulus 54.67% (41/75) 0.5 0.00368 0.049924
GO:0010648 negative regulation of cell communication 10.67% (8/75) 1.66 0.003707 0.049957
GO:0043200 response to amino acid 4.0% (3/75) 3.31 0.003536 0.04997
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_185 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_188 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_240 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_250 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_258 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_36 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_48 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_67 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_87 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_113 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_144 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (75) (download table)

InterPro Domains

GO Terms

Family Terms