Coexpression cluster: Cluster_196 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0030427 site of polarized growth 14.63% (6/41) 4.22 1e-06 0.001067
GO:0051179 localization 43.9% (18/41) 1.72 2e-06 0.001085
GO:0097242 amyloid-beta clearance 7.32% (3/41) 6.39 6e-06 0.001371
GO:0006810 transport 39.02% (16/41) 1.81 3e-06 0.00151
GO:0051234 establishment of localization 39.02% (16/41) 1.75 6e-06 0.001615
GO:2000008 regulation of protein localization to cell surface 7.32% (3/41) 6.48 5e-06 0.001707
GO:0005215 transporter activity 24.39% (10/41) 2.42 1.2e-05 0.002185
GO:0006811 ion transport 21.95% (9/41) 2.52 2e-05 0.003215
GO:0006813 potassium ion transport 9.76% (4/41) 4.45 3.5e-05 0.004123
GO:0035773 insulin secretion involved in cellular response to glucose stimulus 4.88% (2/41) 7.9 3e-05 0.004367
GO:0022804 active transmembrane transporter activity 17.07% (7/41) 2.92 3.4e-05 0.00443
GO:0033572 transferrin transport 4.88% (2/41) 7.44 5.9e-05 0.004816
GO:0006869 lipid transport 12.2% (5/41) 3.6 5.5e-05 0.00482
GO:0030001 metal ion transport 14.63% (6/41) 3.1 6.6e-05 0.004842
GO:0045054 constitutive secretory pathway 4.88% (2/41) 7.57 4.8e-05 0.004853
GO:0097386 glial cell projection 4.88% (2/41) 7.31 7e-05 0.004863
GO:0042995 cell projection 19.51% (8/41) 2.52 6.3e-05 0.004875
GO:0030599 pectinesterase activity 7.32% (3/41) 5.37 5.3e-05 0.005016
GO:0016020 membrane 58.54% (24/41) 1.05 4.6e-05 0.005056
GO:0009846 pollen germination 9.76% (4/41) 4.06 9.8e-05 0.006435
GO:0071468 cellular response to acidic pH 4.88% (2/41) 6.9 0.000128 0.006982
GO:0042886 amide transport 9.76% (4/41) 3.99 0.000117 0.007008
GO:0071702 organic substance transport 24.39% (10/41) 2.03 0.000114 0.007149
GO:0071554 cell wall organization or biogenesis 19.51% (8/41) 2.37 0.000127 0.007242
GO:0017022 myosin binding 7.32% (3/41) 4.85 0.000157 0.008227
GO:2001135 regulation of endocytic recycling 4.88% (2/41) 6.57 0.000202 0.00945
GO:0015291 secondary active transmembrane transporter activity 12.2% (5/41) 3.22 0.00019 0.009611
GO:0015075 ion transmembrane transporter activity 17.07% (7/41) 2.51 0.000198 0.009641
GO:0051286 cell tip 9.76% (4/41) 3.74 0.00023 0.009726
GO:0001881 receptor recycling 4.88% (2/41) 6.5 0.000223 0.009742
GO:0031410 cytoplasmic vesicle 21.95% (9/41) 2.07 0.000216 0.00976
GO:0060187 cell pole 9.76% (4/41) 3.67 0.000272 0.009917
GO:0006812 cation transport 14.63% (6/41) 2.65 0.000351 0.010026
GO:0098993 anchored component of synaptic vesicle membrane 4.88% (2/41) 6.44 0.000245 0.01004
GO:0030073 insulin secretion 4.88% (2/41) 6.37 0.000268 0.010047
GO:0009504 cell plate 7.32% (3/41) 4.46 0.000349 0.010193
GO:0097708 intracellular vesicle 21.95% (9/41) 2.03 0.000266 0.010258
GO:0022857 transmembrane transporter activity 19.51% (8/41) 2.17 0.00032 0.01026
GO:0015318 inorganic molecular entity transmembrane transporter activity 14.63% (6/41) 2.66 0.000345 0.0103
GO:0120025 plasma membrane bounded cell projection 17.07% (7/41) 2.44 0.000261 0.010378
GO:0032367 intracellular cholesterol transport 4.88% (2/41) 6.25 0.000317 0.01041
GO:1902003 regulation of amyloid-beta formation 4.88% (2/41) 6.25 0.000317 0.01041
GO:0032371 regulation of sterol transport 4.88% (2/41) 6.2 0.000343 0.010484
GO:0032374 regulation of cholesterol transport 4.88% (2/41) 6.2 0.000343 0.010484
GO:0006887 exocytosis 7.32% (3/41) 4.54 0.000297 0.01054
GO:0002790 peptide secretion 4.88% (2/41) 6.09 0.000399 0.010686
GO:0030072 peptide hormone secretion 4.88% (2/41) 6.09 0.000399 0.010686
GO:0150093 amyloid-beta clearance by transcytosis 4.88% (2/41) 6.09 0.000399 0.010686
GO:0006885 regulation of pH 7.32% (3/41) 4.52 0.000311 0.01076
GO:0046879 hormone secretion 4.88% (2/41) 6.04 0.000428 0.011241
GO:0110165 cellular anatomical entity 85.37% (35/41) 0.5 0.000445 0.011445
GO:0071467 cellular response to pH 4.88% (2/41) 5.99 0.000458 0.011573
GO:0031489 myosin V binding 4.88% (2/41) 5.94 0.00049 0.011905
GO:1902991 regulation of amyloid precursor protein catabolic process 4.88% (2/41) 5.94 0.00049 0.011905
GO:0051641 cellular localization 21.95% (9/41) 1.89 0.000539 0.01263
GO:0031982 vesicle 21.95% (9/41) 1.9 0.00053 0.012659
GO:0045056 transcytosis 4.88% (2/41) 5.85 0.000555 0.012789
GO:0090406 pollen tube 9.76% (4/41) 3.35 0.000632 0.014054
GO:0032366 intracellular sterol transport 4.88% (2/41) 5.77 0.000625 0.014145
GO:0005575 cellular_component 85.37% (35/41) 0.48 0.000648 0.014177
GO:0010447 response to acidic pH 4.88% (2/41) 5.57 0.000816 0.015535
GO:0032401 establishment of melanosome localization 4.88% (2/41) 5.57 0.000816 0.015535
GO:0032402 melanosome transport 4.88% (2/41) 5.57 0.000816 0.015535
GO:0051904 pigment granule transport 4.88% (2/41) 5.57 0.000816 0.015535
GO:0051905 establishment of pigment granule localization 4.88% (2/41) 5.57 0.000816 0.015535
GO:0022890 inorganic cation transmembrane transporter activity 12.2% (5/41) 2.8 0.000724 0.015594
GO:0098563 intrinsic component of synaptic vesicle membrane 4.88% (2/41) 5.65 0.000737 0.015603
GO:0090404 pollen tube tip 7.32% (3/41) 4.02 0.000844 0.015822
GO:0071840 cellular component organization or biogenesis 39.02% (16/41) 1.17 0.00086 0.015901
GO:0051049 regulation of transport 17.07% (7/41) 2.14 0.00092 0.015902
GO:0032400 melanosome localization 4.88% (2/41) 5.5 0.0009 0.015968
GO:0051875 pigment granule localization 4.88% (2/41) 5.5 0.0009 0.015968
GO:0071555 cell wall organization 14.63% (6/41) 2.4 0.000876 0.015969
GO:0008092 cytoskeletal protein binding 12.2% (5/41) 2.72 0.000917 0.01605
GO:0071705 nitrogen compound transport 19.51% (8/41) 1.98 0.000788 0.016174
GO:0120013 lipid transfer activity 4.88% (2/41) 5.61 0.000776 0.016174
GO:0009506 plasmodesma 24.39% (10/41) 1.64 0.000981 0.016507
GO:0030054 cell junction 26.83% (11/41) 1.53 0.000979 0.01669
GO:0052689 carboxylic ester hydrolase activity 9.76% (4/41) 3.16 0.001024 0.016809
GO:0005319 lipid transporter activity 7.32% (3/41) 3.9 0.001084 0.016944
GO:0035838 growing cell tip 7.32% (3/41) 3.93 0.00102 0.016957
GO:0030301 cholesterol transport 4.88% (2/41) 5.37 0.001079 0.017069
GO:0043112 receptor metabolic process 4.88% (2/41) 5.37 0.001079 0.017069
GO:0009826 unidimensional cell growth 14.63% (6/41) 2.35 0.001066 0.017275
GO:0005911 cell-cell junction 24.39% (10/41) 1.61 0.00119 0.018383
GO:0099072 regulation of postsynaptic membrane neurotransmitter receptor levels 4.88% (2/41) 5.25 0.001274 0.01879
GO:0032365 intracellular lipid transport 4.88% (2/41) 5.25 0.001274 0.01879
GO:0140352 export from cell 9.76% (4/41) 3.09 0.001243 0.018978
GO:0070161 anchoring junction 24.39% (10/41) 1.6 0.001261 0.019038
GO:0055085 transmembrane transport 17.07% (7/41) 2.05 0.001305 0.019043
GO:0016043 cellular component organization 36.59% (15/41) 1.16 0.00138 0.019699
GO:0005770 late endosome 7.32% (3/41) 3.77 0.001402 0.019792
GO:0055038 recycling endosome membrane 4.88% (2/41) 5.2 0.001377 0.019866
GO:0008324 cation transmembrane transporter activity 12.2% (5/41) 2.55 0.001567 0.021889
GO:0098662 inorganic cation transmembrane transport 9.76% (4/41) 2.97 0.001674 0.02313
GO:0080092 regulation of pollen tube growth 7.32% (3/41) 3.66 0.001751 0.023946
GO:0015850 organic hydroxy compound transport 7.32% (3/41) 3.64 0.001795 0.024299
GO:0045055 regulated exocytosis 4.88% (2/41) 4.99 0.001828 0.024493
GO:0050829 defense response to Gram-negative bacterium 7.32% (3/41) 3.6 0.001956 0.025678
GO:0032940 secretion by cell 7.32% (3/41) 3.6 0.001956 0.025678
GO:0023061 signal release 4.88% (2/41) 4.83 0.002273 0.02955
GO:0009505 plant-type cell wall 12.2% (5/41) 2.42 0.002334 0.030042
GO:0051051 negative regulation of transport 7.32% (3/41) 3.49 0.002409 0.030706
GO:0005976 polysaccharide metabolic process 12.2% (5/41) 2.39 0.00252 0.031814
GO:0031901 early endosome membrane 4.88% (2/41) 4.75 0.002548 0.031862
GO:0005618 cell wall 17.07% (7/41) 1.87 0.002704 0.032272
GO:0008150 biological_process 82.93% (34/41) 0.43 0.002693 0.032438
GO:0005548 phospholipid transporter activity 4.88% (2/41) 4.73 0.002619 0.032442
GO:0000910 cytokinesis 7.32% (3/41) 3.44 0.002658 0.032612
GO:0019003 GDP binding 4.88% (2/41) 4.71 0.002691 0.032716
GO:0009860 pollen tube growth 9.76% (4/41) 2.77 0.002774 0.032814
GO:1903829 positive regulation of protein localization 7.32% (3/41) 3.41 0.002832 0.033202
GO:0032386 regulation of intracellular transport 7.32% (3/41) 3.39 0.002922 0.033362
GO:0098655 cation transmembrane transport 9.76% (4/41) 2.75 0.002882 0.033489
GO:0032368 regulation of lipid transport 4.88% (2/41) 4.65 0.002913 0.033546
GO:0045229 external encapsulating structure organization 14.63% (6/41) 2.05 0.002979 0.033716
GO:0071562 nucleus-vacuole junction assembly 2.44% (1/41) 8.31 0.003144 0.034395
GO:0097233 alveolar lamellar body membrane 2.44% (1/41) 8.31 0.003144 0.034395
GO:0032879 regulation of localization 17.07% (7/41) 1.83 0.003087 0.034642
GO:0034220 ion transmembrane transport 12.2% (5/41) 2.3 0.003301 0.03467
GO:0010769 regulation of cell morphogenesis involved in differentiation 7.32% (3/41) 3.36 0.003138 0.034921
GO:0051384 response to glucocorticoid 4.88% (2/41) 4.56 0.0033 0.034945
GO:0015918 sterol transport 4.88% (2/41) 4.57 0.003221 0.03495
GO:0032880 regulation of protein localization 9.76% (4/41) 2.7 0.003283 0.035048
GO:0043269 regulation of ion transport 9.76% (4/41) 2.7 0.003263 0.035121
GO:0009268 response to pH 4.88% (2/41) 4.5 0.003544 0.036637
GO:0016324 apical plasma membrane 7.32% (3/41) 3.3 0.003532 0.036804
GO:0009306 protein secretion 4.88% (2/41) 4.47 0.003711 0.037191
GO:0035592 establishment of protein localization to extracellular region 4.88% (2/41) 4.47 0.003711 0.037191
GO:0071692 protein localization to extracellular region 4.88% (2/41) 4.47 0.003711 0.037191
GO:0030312 external encapsulating structure 17.07% (7/41) 1.78 0.003707 0.038027
GO:0098588 bounding membrane of organelle 21.95% (9/41) 1.49 0.003837 0.038162
GO:0060560 developmental growth involved in morphogenesis 14.63% (6/41) 1.97 0.00397 0.039191
GO:0046903 secretion 7.32% (3/41) 3.22 0.004064 0.039239
GO:0051117 ATPase binding 4.88% (2/41) 4.41 0.004055 0.03944
GO:0031960 response to corticosteroid 4.88% (2/41) 4.41 0.004055 0.03944
GO:1904679 myo-inositol import across plasma membrane 2.44% (1/41) 7.9 0.004189 0.040149
GO:0031090 organelle membrane 29.27% (12/41) 1.19 0.004274 0.040372
GO:0061024 membrane organization 9.76% (4/41) 2.6 0.004244 0.040384
GO:0043231 intracellular membrane-bounded organelle 56.1% (23/41) 0.68 0.004407 0.041041
GO:0098660 inorganic ion transmembrane transport 9.76% (4/41) 2.58 0.004389 0.04116
GO:0008126 acetylesterase activity 2.44% (1/41) 7.57 0.005234 0.04242
GO:0030226 apolipoprotein receptor activity 2.44% (1/41) 7.57 0.005234 0.04242
GO:0034188 apolipoprotein A-I receptor activity 2.44% (1/41) 7.57 0.005234 0.04242
GO:0038027 apolipoprotein A-I-mediated signaling pathway 2.44% (1/41) 7.57 0.005234 0.04242
GO:0043129 surfactant homeostasis 2.44% (1/41) 7.57 0.005234 0.04242
GO:0048875 chemical homeostasis within a tissue 2.44% (1/41) 7.57 0.005234 0.04242
GO:0055091 phospholipid homeostasis 2.44% (1/41) 7.57 0.005234 0.04242
GO:1900223 positive regulation of amyloid-beta clearance 2.44% (1/41) 7.57 0.005234 0.04242
GO:1901074 regulation of engulfment of apoptotic cell 2.44% (1/41) 7.57 0.005234 0.04242
GO:1901076 positive regulation of engulfment of apoptotic cell 2.44% (1/41) 7.57 0.005234 0.04242
GO:1902994 regulation of phospholipid efflux 2.44% (1/41) 7.57 0.005234 0.04242
GO:1902995 positive regulation of phospholipid efflux 2.44% (1/41) 7.57 0.005234 0.04242
GO:1903897 regulation of PERK-mediated unfolded protein response 2.44% (1/41) 7.57 0.005234 0.04242
GO:1903898 negative regulation of PERK-mediated unfolded protein response 2.44% (1/41) 7.57 0.005234 0.04242
GO:0030775 glucuronoxylan 4-O-methyltransferase activity 2.44% (1/41) 7.57 0.005234 0.04242
GO:0001675 acrosome assembly 2.44% (1/41) 7.57 0.005234 0.04242
GO:1905952 regulation of lipid localization 4.88% (2/41) 4.18 0.005474 0.044093
GO:0051650 establishment of vesicle localization 4.88% (2/41) 4.27 0.004883 0.045147
GO:0032465 regulation of cytokinesis 4.88% (2/41) 4.13 0.005885 0.045456
GO:0000911 cytokinesis by cell plate formation 4.88% (2/41) 4.13 0.005885 0.045456
GO:0043226 organelle 60.98% (25/41) 0.6 0.00568 0.045471
GO:0055067 monovalent inorganic cation homeostasis 7.32% (3/41) 3.0 0.006278 0.045538
GO:0051648 vesicle localization 4.88% (2/41) 4.25 0.004979 0.045716
GO:0034338 short-chain carboxylesterase activity 2.44% (1/41) 7.31 0.006277 0.04579
GO:0150094 amyloid-beta clearance by cellular catabolic process 2.44% (1/41) 7.31 0.006277 0.04579
GO:1900221 regulation of amyloid-beta clearance 2.44% (1/41) 7.31 0.006277 0.04579
GO:0045109 intermediate filament organization 2.44% (1/41) 7.31 0.006277 0.04579
GO:0051278 fungal-type cell wall polysaccharide biosynthetic process 2.44% (1/41) 7.31 0.006277 0.04579
GO:0071966 fungal-type cell wall polysaccharide metabolic process 2.44% (1/41) 7.31 0.006277 0.04579
GO:0035621 ER to Golgi ceramide transport 2.44% (1/41) 7.31 0.006277 0.04579
GO:0097449 astrocyte projection 2.44% (1/41) 7.31 0.006277 0.04579
GO:0097450 astrocyte end-foot 2.44% (1/41) 7.31 0.006277 0.04579
GO:0000902 cell morphogenesis 14.63% (6/41) 1.86 0.005761 0.045841
GO:0005975 carbohydrate metabolic process 14.63% (6/41) 1.85 0.005866 0.045848
GO:0030659 cytoplasmic vesicle membrane 9.76% (4/41) 2.43 0.006356 0.045852
GO:0051649 establishment of localization in cell 14.63% (6/41) 1.85 0.005849 0.045983
GO:0060341 regulation of cellular localization 9.76% (4/41) 2.46 0.00584 0.046191
GO:0009932 cell tip growth 9.76% (4/41) 2.52 0.00516 0.046728
GO:0043229 intracellular organelle 60.98% (25/41) 0.61 0.005206 0.046822
GO:0003062 regulation of heart rate by chemical signal 2.44% (1/41) 7.09 0.00732 0.046883
GO:0003064 regulation of heart rate by hormone 2.44% (1/41) 7.09 0.00732 0.046883
GO:0086009 membrane repolarization 2.44% (1/41) 7.09 0.00732 0.046883
GO:0086011 membrane repolarization during action potential 2.44% (1/41) 7.09 0.00732 0.046883
GO:0086013 membrane repolarization during cardiac muscle cell action potential 2.44% (1/41) 7.09 0.00732 0.046883
GO:0090724 central region of growth cone 2.44% (1/41) 7.09 0.00732 0.046883
GO:0099622 cardiac muscle cell membrane repolarization 2.44% (1/41) 7.09 0.00732 0.046883
GO:1902308 regulation of peptidyl-serine dephosphorylation 2.44% (1/41) 7.09 0.00732 0.046883
GO:1902309 negative regulation of peptidyl-serine dephosphorylation 2.44% (1/41) 7.09 0.00732 0.046883
GO:1905912 regulation of calcium ion export across plasma membrane 2.44% (1/41) 7.09 0.00732 0.046883
GO:1905913 negative regulation of calcium ion export across plasma membrane 2.44% (1/41) 7.09 0.00732 0.046883
GO:0010875 positive regulation of cholesterol efflux 2.44% (1/41) 7.09 0.00732 0.046883
GO:0018149 peptide cross-linking 2.44% (1/41) 7.09 0.00732 0.046883
GO:0042984 regulation of amyloid precursor protein biosynthetic process 2.44% (1/41) 7.09 0.00732 0.046883
GO:0042985 negative regulation of amyloid precursor protein biosynthetic process 2.44% (1/41) 7.09 0.00732 0.046883
GO:0044857 plasma membrane raft organization 2.44% (1/41) 7.09 0.00732 0.046883
GO:1902430 negative regulation of amyloid-beta formation 2.44% (1/41) 7.09 0.00732 0.046883
GO:2000425 regulation of apoptotic cell clearance 2.44% (1/41) 7.09 0.00732 0.046883
GO:2000427 positive regulation of apoptotic cell clearance 2.44% (1/41) 7.09 0.00732 0.046883
GO:0007289 spermatid nucleus differentiation 2.44% (1/41) 7.09 0.00732 0.046883
GO:0006699 bile acid biosynthetic process 2.44% (1/41) 7.09 0.00732 0.046883
GO:0097440 apical dendrite 2.44% (1/41) 7.09 0.00732 0.046883
GO:0098590 plasma membrane region 9.76% (4/41) 2.45 0.006109 0.04691
GO:0043227 membrane-bounded organelle 56.1% (23/41) 0.67 0.005156 0.047014
GO:0016049 cell growth 14.63% (6/41) 1.78 0.007477 0.047428
GO:0012506 vesicle membrane 9.76% (4/41) 2.36 0.007442 0.047437
GO:0010008 endosome membrane 7.32% (3/41) 2.9 0.007607 0.048022
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_199 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_11 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_18 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_140 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_180 0.009 Orthogroups with 8 Potato genotypes Compare
Sequences (41) (download table)

InterPro Domains

GO Terms

Family Terms