Coexpression cluster: Cluster_267 (HCCA Clusters (HRR 50 & PCC 0.5))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0140096 catalytic activity, acting on a protein 36.51% (23/63) 1.82 0.0 5.9e-05
GO:0004175 endopeptidase activity 12.7% (8/63) 3.53 0.0 0.000455
GO:0010119 regulation of stomatal movement 14.29% (9/63) 3.07 1e-06 0.000568
GO:0019538 protein metabolic process 38.1% (24/63) 1.5 1e-06 0.000575
GO:0006508 proteolysis 19.05% (12/63) 2.43 2e-06 0.000613
GO:0004197 cysteine-type endopeptidase activity 7.94% (5/63) 4.64 2e-06 0.0007
GO:1901564 organonitrogen compound metabolic process 47.62% (30/63) 1.13 5e-06 0.001075
GO:0016020 membrane 55.56% (35/63) 0.98 5e-06 0.001145
GO:0006996 organelle organization 26.98% (17/63) 1.79 4e-06 0.001215
GO:0005515 protein binding 65.08% (41/63) 0.78 1.1e-05 0.002138
GO:0050789 regulation of biological process 60.32% (38/63) 0.85 1.2e-05 0.002158
GO:0005886 plasma membrane 34.92% (22/63) 1.35 1.7e-05 0.002698
GO:0008233 peptidase activity 12.7% (8/63) 2.75 2.4e-05 0.003649
GO:0008234 cysteine-type peptidase activity 7.94% (5/63) 3.84 2.7e-05 0.003792
GO:0005829 cytosol 34.92% (22/63) 1.29 3.3e-05 0.004232
GO:0090333 regulation of stomatal closure 7.94% (5/63) 3.65 5e-05 0.004681
GO:0032501 multicellular organismal process 39.68% (25/63) 1.14 4.5e-05 0.004845
GO:0048583 regulation of response to stimulus 33.33% (21/63) 1.3 5e-05 0.00485
GO:0048869 cellular developmental process 23.81% (15/63) 1.67 4.7e-05 0.004864
GO:0009555 pollen development 12.7% (8/63) 2.63 4.3e-05 0.004889
GO:0005764 lysosome 7.94% (5/63) 3.62 5.5e-05 0.004913
GO:0065007 biological regulation 61.9% (39/63) 0.75 4.2e-05 0.005103
GO:0051603 proteolysis involved in protein catabolic process 12.7% (8/63) 2.51 7.6e-05 0.00644
GO:0043231 intracellular membrane-bounded organelle 58.73% (37/63) 0.75 9.5e-05 0.007436
GO:0050794 regulation of cellular process 52.38% (33/63) 0.84 9.4e-05 0.007629
GO:1903352 L-ornithine transmembrane transport 3.17% (2/63) 6.96 0.000114 0.008552
GO:0043227 membrane-bounded organelle 58.73% (37/63) 0.73 0.000124 0.008962
GO:0043229 intracellular organelle 63.49% (40/63) 0.67 0.000134 0.00898
GO:0043226 organelle 63.49% (40/63) 0.66 0.000155 0.009127
GO:0009966 regulation of signal transduction 22.22% (14/63) 1.62 0.000132 0.009186
GO:0032502 developmental process 49.21% (31/63) 0.87 0.000142 0.009222
GO:0008219 cell death 12.7% (8/63) 2.37 0.000154 0.009383
GO:0007006 mitochondrial membrane organization 4.76% (3/63) 4.82 0.00017 0.009457
GO:0000323 lytic vacuole 7.94% (5/63) 3.31 0.000153 0.009635
GO:0033157 regulation of intracellular protein transport 6.35% (4/63) 3.87 0.000168 0.009654
GO:0009987 cellular process 74.6% (47/63) 0.51 0.000225 0.012177
GO:0016310 phosphorylation 17.46% (11/63) 1.83 0.000233 0.012282
GO:0046777 protein autophosphorylation 12.7% (8/63) 2.25 0.000266 0.012347
GO:0006807 nitrogen compound metabolic process 49.21% (31/63) 0.82 0.000276 0.012488
GO:0035794 positive regulation of mitochondrial membrane permeability 3.17% (2/63) 6.37 0.000265 0.012589
GO:0016540 protein autoprocessing 3.17% (2/63) 6.37 0.000265 0.012589
GO:0023051 regulation of signaling 22.22% (14/63) 1.51 0.000284 0.012591
GO:0016773 phosphotransferase activity, alcohol group as acceptor 17.46% (11/63) 1.81 0.000259 0.012962
GO:0034097 response to cytokine 7.94% (5/63) 3.15 0.000254 0.013003
GO:0010623 programmed cell death involved in cell development 4.76% (3/63) 4.52 0.000311 0.013187
GO:0010646 regulation of cell communication 22.22% (14/63) 1.5 0.000306 0.013256
GO:0015189 L-lysine transmembrane transporter activity 3.17% (2/63) 6.19 0.000342 0.013899
GO:0110165 cellular anatomical entity 80.95% (51/63) 0.43 0.000354 0.014065
GO:0048229 gametophyte development 12.7% (8/63) 2.2 0.00034 0.014101
GO:0015217 ADP transmembrane transporter activity 3.17% (2/63) 6.11 0.000385 0.014419
GO:0046902 regulation of mitochondrial membrane permeability 3.17% (2/63) 6.11 0.000385 0.014419
GO:0015822 ornithine transport 3.17% (2/63) 6.11 0.000385 0.014419
GO:0051179 localization 30.16% (19/63) 1.17 0.000403 0.014541
GO:0098542 defense response to other organism 26.98% (17/63) 1.28 0.000396 0.014562
GO:0015866 ADP transport 3.17% (2/63) 5.96 0.000477 0.016894
GO:0016301 kinase activity 17.46% (11/63) 1.69 0.000517 0.017979
GO:0005347 ATP transmembrane transporter activity 3.17% (2/63) 5.82 0.000578 0.019107
GO:1904338 regulation of dopaminergic neuron differentiation 3.17% (2/63) 5.82 0.000578 0.019107
GO:0043170 macromolecule metabolic process 41.27% (26/63) 0.88 0.000599 0.019467
GO:0005575 cellular_component 80.95% (51/63) 0.41 0.000571 0.019531
GO:0006812 cation transport 11.11% (7/63) 2.25 0.000645 0.020624
GO:0034976 response to endoplasmic reticulum stress 6.35% (4/63) 3.27 0.000814 0.022983
GO:0048585 negative regulation of response to stimulus 17.46% (11/63) 1.62 0.000784 0.023154
GO:0001837 epithelial to mesenchymal transition 3.17% (2/63) 5.58 0.00081 0.023228
GO:0008150 biological_process 80.95% (51/63) 0.4 0.000752 0.023276
GO:1990542 mitochondrial transmembrane transport 4.76% (3/63) 4.05 0.000802 0.023341
GO:0010105 negative regulation of ethylene-activated signaling pathway 4.76% (3/63) 4.07 0.000782 0.023442
GO:0070298 negative regulation of phosphorelay signal transduction system 4.76% (3/63) 4.07 0.000782 0.023442
GO:1905710 positive regulation of membrane permeability 3.17% (2/63) 5.63 0.000749 0.02354
GO:0006468 protein phosphorylation 14.29% (9/63) 1.83 0.000895 0.024562
GO:0106310 protein serine kinase activity 7.94% (5/63) 2.75 0.000895 0.024908
GO:0071345 cellular response to cytokine stimulus 6.35% (4/63) 3.2 0.000963 0.025711
GO:0071310 cellular response to organic substance 14.29% (9/63) 1.81 0.000961 0.026011
GO:0032386 regulation of intracellular transport 6.35% (4/63) 3.19 0.00099 0.026065
GO:0006471 protein ADP-ribosylation 3.17% (2/63) 5.42 0.001009 0.026227
GO:0009403 toxin biosynthetic process 4.76% (3/63) 3.84 0.001234 0.02764
GO:1901679 nucleotide transmembrane transport 3.17% (2/63) 5.37 0.00108 0.027702
GO:0015867 ATP transport 3.17% (2/63) 5.28 0.001229 0.027855
GO:0048762 mesenchymal cell differentiation 3.17% (2/63) 5.28 0.001229 0.027855
GO:0090559 regulation of membrane permeability 3.17% (2/63) 5.28 0.001229 0.027855
GO:0015174 basic amino acid transmembrane transporter activity 3.17% (2/63) 5.28 0.001229 0.027855
GO:0006851 mitochondrial calcium ion transmembrane transport 3.17% (2/63) 5.28 0.001229 0.027855
GO:0052314 phytoalexin metabolic process 4.76% (3/63) 3.87 0.001154 0.028106
GO:0097367 carbohydrate derivative binding 19.05% (12/63) 1.47 0.001112 0.028153
GO:0052315 phytoalexin biosynthetic process 4.76% (3/63) 3.88 0.001128 0.028178
GO:0005488 binding 69.84% (44/63) 0.48 0.001143 0.028188
GO:0016772 transferase activity, transferring phosphorus-containing groups 17.46% (11/63) 1.55 0.001175 0.02827
GO:0005524 ATP binding 15.87% (10/63) 1.63 0.001279 0.028338
GO:0006952 defense response 28.57% (18/63) 1.08 0.0013 0.028478
GO:0036211 protein modification process 23.81% (15/63) 1.23 0.001356 0.029357
GO:1900181 negative regulation of protein localization to nucleus 3.17% (2/63) 5.19 0.001387 0.029713
GO:0098955 intrinsic component of presynaptic endosome membrane 1.59% (1/63) 9.28 0.001612 0.031102
GO:0099067 integral component of presynaptic endosome membrane 1.59% (1/63) 9.28 0.001612 0.031102
GO:1905502 acetyl-CoA binding 1.59% (1/63) 9.28 0.001612 0.031102
GO:0030941 chloroplast targeting sequence binding 1.59% (1/63) 9.28 0.001612 0.031102
GO:0097640 L-ornithine import across plasma membrane 1.59% (1/63) 9.28 0.001612 0.031102
GO:0052740 1-acyl-2-lysophosphatidylserine acylhydrolase activity 1.59% (1/63) 9.28 0.001612 0.031102
GO:0043262 ADP phosphatase activity 1.59% (1/63) 9.28 0.001612 0.031102
GO:0007017 microtubule-based process 9.52% (6/63) 2.25 0.001644 0.031417
GO:0051223 regulation of protein transport 6.35% (4/63) 3.02 0.001508 0.031595
GO:0048856 anatomical structure development 36.51% (23/63) 0.87 0.001674 0.031684
GO:0042742 defense response to bacterium 14.29% (9/63) 1.72 0.001507 0.031917
GO:0051094 positive regulation of developmental process 12.7% (8/63) 1.84 0.001711 0.03207
GO:0043622 cortical microtubule organization 4.76% (3/63) 3.72 0.001557 0.032292
GO:0010037 response to carbon dioxide 4.76% (3/63) 3.65 0.001789 0.032886
GO:0016050 vesicle organization 6.35% (4/63) 2.96 0.001776 0.032959
GO:0003674 molecular_function 77.78% (49/63) 0.38 0.001969 0.034573
GO:0006796 phosphate-containing compound metabolic process 20.63% (13/63) 1.29 0.002028 0.034672
GO:0006935 chemotaxis 6.35% (4/63) 2.93 0.001921 0.034673
GO:0012501 programmed cell death 9.52% (6/63) 2.18 0.002047 0.0347
GO:0000295 adenine nucleotide transmembrane transporter activity 3.17% (2/63) 4.92 0.002013 0.034722
GO:0009861 jasmonic acid and ethylene-dependent systemic resistance 3.17% (2/63) 4.92 0.002013 0.034722
GO:0010104 regulation of ethylene-activated signaling pathway 4.76% (3/63) 3.6 0.001966 0.034835
GO:0070297 regulation of phosphorelay signal transduction system 4.76% (3/63) 3.6 0.001966 0.034835
GO:1903828 negative regulation of protein localization 4.76% (3/63) 3.58 0.002078 0.034909
GO:0005346 purine ribonucleotide transmembrane transporter activity 3.17% (2/63) 4.96 0.001917 0.034917
GO:0048519 negative regulation of biological process 30.16% (19/63) 0.97 0.002207 0.036154
GO:0006816 calcium ion transport 4.76% (3/63) 3.5 0.002394 0.036175
GO:0032559 adenyl ribonucleotide binding 15.87% (10/63) 1.53 0.002232 0.036253
GO:0070201 regulation of establishment of protein localization 6.35% (4/63) 2.84 0.002383 0.036284
GO:0090317 negative regulation of intracellular protein transport 3.17% (2/63) 4.79 0.00242 0.036288
GO:0004672 protein kinase activity 14.29% (9/63) 1.64 0.002179 0.036296
GO:0098655 cation transmembrane transport 7.94% (5/63) 2.45 0.002203 0.036386
GO:0002376 immune system process 14.29% (9/63) 1.63 0.002375 0.036454
GO:0006793 phosphorus metabolic process 20.63% (13/63) 1.27 0.002361 0.036516
GO:0010494 cytoplasmic stress granule 4.76% (3/63) 3.51 0.002353 0.036691
GO:0007010 cytoskeleton organization 9.52% (6/63) 2.15 0.002337 0.036729
GO:0042330 taxis 6.35% (4/63) 2.85 0.002334 0.036978
GO:0030554 adenyl nucleotide binding 15.87% (10/63) 1.52 0.002317 0.037008
GO:0070887 cellular response to chemical stimulus 19.05% (12/63) 1.34 0.002314 0.03728
GO:0015216 purine nucleotide transmembrane transporter activity 3.17% (2/63) 4.75 0.002528 0.037609
GO:0007163 establishment or maintenance of cell polarity 4.76% (3/63) 3.47 0.002563 0.037847
GO:0048814 regulation of dendrite morphogenesis 3.17% (2/63) 4.69 0.002749 0.039988
GO:0015215 nucleotide transmembrane transporter activity 3.17% (2/63) 4.69 0.002749 0.039988
GO:0010033 response to organic substance 33.33% (21/63) 0.87 0.002864 0.041342
GO:0044238 primary metabolic process 49.21% (31/63) 0.63 0.003075 0.043749
GO:0007275 multicellular organism development 17.46% (11/63) 1.37 0.003058 0.043823
GO:0045172 germline ring canal 1.59% (1/63) 8.28 0.003221 0.044522
GO:0007031 peroxisome organization 3.17% (2/63) 4.58 0.003219 0.044806
GO:0032387 negative regulation of intracellular transport 3.17% (2/63) 4.58 0.003219 0.044806
GO:1901000 regulation of response to salt stress 6.35% (4/63) 2.73 0.00318 0.044917
GO:0006487 protein N-linked glycosylation 3.17% (2/63) 4.55 0.003341 0.04586
GO:0008514 organic anion transmembrane transporter activity 6.35% (4/63) 2.7 0.003429 0.046733
GO:0048523 negative regulation of cellular process 23.81% (15/63) 1.09 0.003481 0.046787
GO:0051716 cellular response to stimulus 28.57% (18/63) 0.96 0.00346 0.04683
GO:0061024 membrane organization 7.94% (5/63) 2.3 0.00351 0.046854
GO:0035639 purine ribonucleoside triphosphate binding 15.87% (10/63) 1.43 0.003559 0.047186
GO:0031122 cytoplasmic microtubule organization 4.76% (3/63) 3.29 0.003624 0.047718
GO:0009700 indole phytoalexin biosynthetic process 3.17% (2/63) 4.42 0.003987 0.049817
GO:0010120 camalexin biosynthetic process 3.17% (2/63) 4.42 0.003987 0.049817
GO:0046217 indole phytoalexin metabolic process 3.17% (2/63) 4.42 0.003987 0.049817
GO:0052317 camalexin metabolic process 3.17% (2/63) 4.42 0.003987 0.049817
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_24 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_46 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_51 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_157 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_161 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_190 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_210 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_249 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (63) (download table)

InterPro Domains

GO Terms

Family Terms