Coexpression cluster: Cluster_24 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0030749 loganate O-methyltransferase activity 7.48% (8/107) 6.56 0.0 0.0
GO:0019010 farnesoic acid O-methyltransferase activity 6.54% (7/107) 6.57 0.0 0.0
GO:0035195 miRNA-mediated gene silencing 6.54% (7/107) 5.28 0.0 0.0
GO:0035834 indole alkaloid metabolic process 9.35% (10/107) 3.9 0.0 1e-06
GO:0002238 response to molecule of fungal origin 11.21% (12/107) 3.18 0.0 3e-06
GO:0035194 post-transcriptional gene silencing by RNA 6.54% (7/107) 4.54 0.0 5e-06
GO:0009753 response to jasmonic acid 13.08% (14/107) 2.72 0.0 5e-06
GO:0080027 response to herbivore 6.54% (7/107) 4.37 0.0 9e-06
GO:0070542 response to fatty acid 13.08% (14/107) 2.62 0.0 1e-05
GO:0016441 post-transcriptional gene silencing 6.54% (7/107) 4.24 0.0 1.3e-05
GO:0008171 O-methyltransferase activity 6.54% (7/107) 4.13 0.0 2.1e-05
GO:2000280 regulation of root development 9.35% (10/107) 3.15 0.0 2.4e-05
GO:0009820 alkaloid metabolic process 10.28% (11/107) 2.74 1e-06 8.7e-05
GO:0008843 endochitinase activity 3.74% (4/107) 5.65 1e-06 0.000116
GO:0016231 beta-N-acetylglucosaminidase activity 2.8% (3/107) 6.78 2e-06 0.000169
GO:0004568 chitinase activity 3.74% (4/107) 5.47 2e-06 0.000174
GO:0006032 chitin catabolic process 3.74% (4/107) 5.43 2e-06 0.000175
GO:1901072 glucosamine-containing compound catabolic process 3.74% (4/107) 5.43 2e-06 0.000175
GO:0106240 labd-13Z-ene-9,15,16-triol synthase activity 4.67% (5/107) 4.63 2e-06 0.000176
GO:1901944 miltiradiene metabolic process 4.67% (5/107) 4.5 3e-06 0.000188
GO:1901946 miltiradiene biosynthetic process 4.67% (5/107) 4.5 3e-06 0.000188
GO:0006030 chitin metabolic process 3.74% (4/107) 5.34 3e-06 0.000199
GO:0015186 L-glutamine transmembrane transporter activity 3.74% (4/107) 5.23 4e-06 0.00024
GO:0006026 aminoglycan catabolic process 3.74% (4/107) 5.16 5e-06 0.000271
GO:0046348 amino sugar catabolic process 3.74% (4/107) 5.16 5e-06 0.000271
GO:0004563 beta-N-acetylhexosaminidase activity 2.8% (3/107) 6.29 7e-06 0.000345
GO:0009751 response to salicylic acid 11.21% (12/107) 2.26 8e-06 0.000351
GO:0016998 cell wall macromolecule catabolic process 4.67% (5/107) 4.25 7e-06 0.000354
GO:0008061 chitin binding 3.74% (4/107) 4.96 9e-06 0.000357
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 7.48% (8/107) 2.97 9e-06 0.000359
GO:0008168 methyltransferase activity 8.41% (9/107) 2.76 8e-06 0.00036
GO:0098712 L-glutamate import across plasma membrane 3.74% (4/107) 4.99 8e-06 0.00036
GO:1901071 glucosamine-containing compound metabolic process 3.74% (4/107) 4.99 8e-06 0.00036
GO:0031047 gene silencing by RNA 6.54% (7/107) 3.33 7e-06 0.000363
GO:0016741 transferase activity, transferring one-carbon groups 8.41% (9/107) 2.7 1.1e-05 0.000402
GO:0015929 hexosaminidase activity 2.8% (3/107) 6.1 1.1e-05 0.000412
GO:0009617 response to bacterium 18.69% (20/107) 1.57 1.1e-05 0.000413
GO:0009725 response to hormone 26.17% (28/107) 1.22 1.4e-05 0.000493
GO:0042742 defense response to bacterium 14.95% (16/107) 1.79 1.5e-05 0.000522
GO:0015813 L-glutamate transmembrane transport 3.74% (4/107) 4.68 1.9e-05 0.000623
GO:0080144 amino acid homeostasis 3.74% (4/107) 4.68 1.9e-05 0.000623
GO:0051938 L-glutamate import 3.74% (4/107) 4.65 2e-05 0.000652
GO:0015800 acidic amino acid transport 3.74% (4/107) 4.61 2.3e-05 0.000728
GO:0089718 amino acid import across plasma membrane 3.74% (4/107) 4.58 2.5e-05 0.000743
GO:0003333 amino acid transmembrane transport 4.67% (5/107) 3.87 2.5e-05 0.000748
GO:0004197 cysteine-type endopeptidase activity 4.67% (5/107) 3.88 2.4e-05 0.000753
GO:0014070 response to organic cyclic compound 15.89% (17/107) 1.63 3.2e-05 0.000917
GO:0006040 amino sugar metabolic process 3.74% (4/107) 4.4 4e-05 0.001135
GO:0102312 4-coumaroyl 2'-hydroxylase activity 1.87% (2/107) 7.51 4.4e-05 0.001234
GO:0009719 response to endogenous stimulus 26.17% (28/107) 1.12 4.7e-05 0.001254
GO:0015171 amino acid transmembrane transporter activity 4.67% (5/107) 3.69 4.7e-05 0.001268
GO:0033993 response to lipid 21.5% (23/107) 1.28 5.1e-05 0.001336
GO:0032973 amino acid export across plasma membrane 2.8% (3/107) 5.34 5.6e-05 0.001402
GO:0015175 neutral amino acid transmembrane transporter activity 3.74% (4/107) 4.28 5.6e-05 0.001427
GO:0034639 L-amino acid efflux transmembrane transporter activity 2.8% (3/107) 5.29 6.2e-05 0.001539
GO:0006865 amino acid transport 4.67% (5/107) 3.51 8.2e-05 0.001993
GO:1902475 L-alpha-amino acid transmembrane transport 3.74% (4/107) 4.09 9.5e-05 0.002227
GO:0010033 response to organic substance 33.64% (36/107) 0.89 9.3e-05 0.002234
GO:1900273 positive regulation of long-term synaptic potentiation 1.87% (2/107) 6.93 0.000111 0.002552
GO:0016098 monoterpenoid metabolic process 4.67% (5/107) 3.4 0.000118 0.002642
GO:0016099 monoterpenoid biosynthetic process 4.67% (5/107) 3.4 0.000118 0.002642
GO:0006022 aminoglycan metabolic process 3.74% (4/107) 3.99 0.000123 0.002707
GO:1900140 regulation of seedling development 7.48% (8/107) 2.42 0.000136 0.00293
GO:0015807 L-amino acid transport 3.74% (4/107) 3.91 0.000151 0.003217
GO:1901136 carbohydrate derivative catabolic process 4.67% (5/107) 3.23 0.000207 0.00433
GO:0015179 L-amino acid transmembrane transporter activity 3.74% (4/107) 3.72 0.000254 0.005237
GO:0006835 dicarboxylic acid transport 3.74% (4/107) 3.63 0.00032 0.006514
GO:1901700 response to oxygen-containing compound 29.91% (32/107) 0.87 0.000331 0.006622
GO:0008234 cysteine-type peptidase activity 4.67% (5/107) 3.07 0.000338 0.006674
GO:0000325 plant-type vacuole 4.67% (5/107) 3.06 0.000353 0.006861
GO:0000326 protein storage vacuole 2.8% (3/107) 4.43 0.000377 0.007042
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen 7.48% (8/107) 2.2 0.000377 0.007139
GO:1905039 carboxylic acid transmembrane transport 4.67% (5/107) 3.04 0.000375 0.007198
GO:0010029 regulation of seed germination 6.54% (7/107) 2.36 0.000461 0.008367
GO:1903825 organic acid transmembrane transport 4.67% (5/107) 2.98 0.000459 0.008441
GO:0009611 response to wounding 11.21% (12/107) 1.62 0.00053 0.009499
GO:0016102 diterpenoid biosynthetic process 4.67% (5/107) 2.83 0.000728 0.012877
GO:0009505 plant-type cell wall 8.41% (9/107) 1.88 0.000795 0.013878
GO:0020037 heme binding 5.61% (6/107) 2.43 0.000905 0.015609
GO:0009416 response to light stimulus 16.82% (18/107) 1.17 0.000924 0.015724
GO:1902289 negative regulation of defense response to oomycetes 1.87% (2/107) 5.43 0.000983 0.016325
GO:0006624 vacuolar protein processing 1.87% (2/107) 5.43 0.000983 0.016325
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen 4.67% (5/107) 2.71 0.00105 0.017234
GO:0043207 response to external biotic stimulus 28.04% (30/107) 0.81 0.001167 0.018926
GO:0004497 monooxygenase activity 7.48% (8/107) 1.92 0.001287 0.020625
GO:0097061 dendritic spine organization 1.87% (2/107) 5.19 0.001366 0.021381
GO:1900271 regulation of long-term synaptic potentiation 1.87% (2/107) 5.19 0.001366 0.021381
GO:0098542 defense response to other organism 21.5% (23/107) 0.95 0.001433 0.02218
GO:0099173 postsynapse organization 1.87% (2/107) 5.12 0.001507 0.02306
GO:0009607 response to biotic stimulus 28.04% (30/107) 0.78 0.001531 0.023172
GO:0009314 response to radiation 16.82% (18/107) 1.11 0.001558 0.023319
GO:0000322 storage vacuole 2.8% (3/107) 3.71 0.001618 0.023946
GO:0046246 terpene biosynthetic process 5.61% (6/107) 2.26 0.001672 0.024487
GO:0090358 positive regulation of tryptophan metabolic process 1.87% (2/107) 4.99 0.001809 0.025664
GO:0010373 negative regulation of gibberellin biosynthetic process 1.87% (2/107) 4.99 0.001809 0.025664
GO:0032801 receptor catabolic process 1.87% (2/107) 4.99 0.001809 0.025664
GO:0080187 floral organ senescence 2.8% (3/107) 3.64 0.001848 0.025951
GO:0045764 positive regulation of cellular amino acid metabolic process 1.87% (2/107) 4.93 0.00197 0.0271
GO:0003014 renal system process 1.87% (2/107) 4.93 0.00197 0.0271
GO:0009733 response to auxin 8.41% (9/107) 1.68 0.002053 0.027965
GO:1990019 protein storage vacuole organization 1.87% (2/107) 4.87 0.002137 0.028822
GO:0000272 polysaccharide catabolic process 4.67% (5/107) 2.47 0.002191 0.02926
GO:0046906 tetrapyrrole binding 5.61% (6/107) 2.17 0.00225 0.029746
GO:0035865 cellular response to potassium ion 1.87% (2/107) 4.81 0.002311 0.029981
GO:0040015 negative regulation of multicellular organism growth 1.87% (2/107) 4.81 0.002311 0.029981
GO:0005342 organic acid transmembrane transporter activity 4.67% (5/107) 2.43 0.002492 0.031431
GO:0046943 carboxylic acid transmembrane transporter activity 4.67% (5/107) 2.43 0.002492 0.031431
GO:0042214 terpene metabolic process 5.61% (6/107) 2.15 0.002464 0.031658
GO:0048316 seed development 4.67% (5/107) 2.42 0.002556 0.031938
GO:0016101 diterpenoid metabolic process 4.67% (5/107) 2.41 0.002621 0.03245
GO:0033240 positive regulation of cellular amine metabolic process 1.87% (2/107) 4.71 0.002679 0.032868
GO:0009411 response to UV 6.54% (7/107) 1.89 0.002927 0.035593
GO:0019632 shikimate metabolic process 1.87% (2/107) 4.61 0.003072 0.036379
GO:0045827 negative regulation of isoprenoid metabolic process 1.87% (2/107) 4.61 0.003072 0.036379
GO:0050806 positive regulation of synaptic transmission 1.87% (2/107) 4.61 0.003072 0.036379
GO:0035864 response to potassium ion 1.87% (2/107) 4.56 0.003278 0.038484
GO:0051707 response to other organism 25.23% (27/107) 0.75 0.003731 0.041649
GO:0010421 hydrogen peroxide-mediated programmed cell death 1.87% (2/107) 4.47 0.003708 0.041743
GO:0036474 cell death in response to hydrogen peroxide 1.87% (2/107) 4.47 0.003708 0.041743
GO:0006551 leucine metabolic process 1.87% (2/107) 4.47 0.003708 0.041743
GO:0106027 neuron projection organization 1.87% (2/107) 4.47 0.003708 0.041743
GO:0046942 carboxylic acid transport 4.67% (5/107) 2.3 0.003617 0.042103
GO:0090693 plant organ senescence 6.54% (7/107) 1.81 0.003954 0.043433
GO:0003824 catalytic activity 45.79% (49/107) 0.47 0.00395 0.043735
GO:0010629 negative regulation of gene expression 7.48% (8/107) 1.63 0.004429 0.047123
GO:0106145 scopoletin 8-hydroxylase activity 1.87% (2/107) 4.34 0.004401 0.047201
GO:0106147 fraxetin biosynthesis 1.87% (2/107) 4.34 0.004401 0.047201
GO:2000071 regulation of defense response by callose deposition 1.87% (2/107) 4.34 0.004401 0.047201
GO:0003853 2-methylacyl-CoA dehydrogenase activity 0.93% (1/107) 7.51 0.005467 0.049644
GO:0004085 butyryl-CoA dehydrogenase activity 0.93% (1/107) 7.51 0.005467 0.049644
GO:0008470 isovaleryl-CoA dehydrogenase activity 0.93% (1/107) 7.51 0.005467 0.049644
GO:0046359 butyrate catabolic process 0.93% (1/107) 7.51 0.005467 0.049644
GO:0102035 isobutyryl-CoA:FAD oxidoreductase activity 0.93% (1/107) 7.51 0.005467 0.049644
GO:1902189 2-methylbutanoyl-CoA(4-) metabolic process 0.93% (1/107) 7.51 0.005467 0.049644
GO:1902190 2-methylbutanoyl-CoA(4-) catabolic process 0.93% (1/107) 7.51 0.005467 0.049644
GO:1902192 2-methylbut-2-enoyl-CoA(4-) metabolic process 0.93% (1/107) 7.51 0.005467 0.049644
GO:1902195 isovaleryl-CoA(4-) metabolic process 0.93% (1/107) 7.51 0.005467 0.049644
GO:1902196 isovaleryl-CoA(4-) catabolic process 0.93% (1/107) 7.51 0.005467 0.049644
GO:1902198 3-methylbut-2-enoyl-CoA(4-) metabolic process 0.93% (1/107) 7.51 0.005467 0.049644
GO:0010913 regulation of sterigmatocystin biosynthetic process 0.93% (1/107) 7.51 0.005467 0.049644
GO:0102158 very-long-chain 3-hydroxyacyl-CoA dehydratase activity 0.93% (1/107) 7.51 0.005467 0.049644
GO:0102343 3-hydroxy-arachidoyl-CoA dehydratase activity 0.93% (1/107) 7.51 0.005467 0.049644
GO:0102344 3-hydroxy-behenoyl-CoA dehydratase activity 0.93% (1/107) 7.51 0.005467 0.049644
GO:0102345 3-hydroxy-lignoceroyl-CoA dehydratase activity 0.93% (1/107) 7.51 0.005467 0.049644
GO:0044419 biological process involved in interspecies interaction between organisms 25.23% (27/107) 0.71 0.005526 0.049843
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_38 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_51 0.016 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_53 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_76 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_84 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_92 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_101 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_102 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_103 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_111 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_132 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_136 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_137 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_145 0.014 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_149 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_208 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_237 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_250 0.014 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_267 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_20 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (107) (download table)

InterPro Domains

GO Terms

Family Terms