SOLTUB.AGRIA.G00000011247

Description : double-stranded DNA binding protein

Gene families : OG_02_0008460 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000011247
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_46

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0001558	regulation of cell growth	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-templated DNA replication	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009330	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex	IEA	AHRD
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009913	epidermal cell differentiation	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010090	trichome morphogenesis	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030307	positive regulation of cell growth	IEA	AHRD
BP	GO:0030855	epithelial cell differentiation	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042023	DNA endoreduplication	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044786	cell cycle DNA replication	None	Extended
BP	GO:0045927	positive regulation of growth	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048364	root development	IEA	AHRD
BP	GO:0048367	shoot system development	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051276	chromosome organization	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000083	regulation of transcription involved in G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
CC	GO:0000228	nuclear chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0000280	nuclear division	IEP	Predict GO terms from Neighborhoods
CC	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000414	regulation of histone H3-K36 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0000416	positive regulation of histone H3-K36 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0000725	recombinational repair	IEP	Predict GO terms from Neighborhoods
CC	GO:0000776	kinetochore	IEP	Predict GO terms from Neighborhoods
CC	GO:0000785	chromatin	IEP	Predict GO terms from Neighborhoods
CC	GO:0000793	condensed chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0000794	condensed nuclear chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0000966	RNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000967	rRNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0000993	RNA polymerase II complex binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001098	basal transcription machinery binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001099	basal RNA polymerase II transcription machinery binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001207	obsolete histone displacement	IEP	Predict GO terms from Neighborhoods
BP	GO:0001833	inner cell mass cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001843	neural tube closure	IEP	Predict GO terms from Neighborhoods
BP	GO:0001932	regulation of protein phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002009	morphogenesis of an epithelium	IEP	Predict GO terms from Neighborhoods
MF	GO:0002039	p53 binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0002574	thrombocyte differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003712	transcription coregulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003713	transcription coactivator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Predict GO terms from Neighborhoods
CC	GO:0005811	lipid droplet	IEP	Predict GO terms from Neighborhoods
BP	GO:0006275	regulation of DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006334	nucleosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0006337	nucleosome disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0006338	chromatin remodeling	IEP	Predict GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0007059	chromosome segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007127	meiosis I	IEP	Predict GO terms from Neighborhoods
BP	GO:0007140	male meiotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0007141	male meiosis I	IEP	Predict GO terms from Neighborhoods
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0008023	transcription elongation factor complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0008024	cyclin/CDK positive transcription elongation factor complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0008156	negative regulation of DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0008283	cell population proliferation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008353	RNA polymerase II CTD heptapeptide repeat kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009292	horizontal gene transfer	IEP	Predict GO terms from Neighborhoods
BP	GO:0009294	DNA-mediated transformation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009967	positive regulation of signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0010022	meristem determinacy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010030	positive regulation of seed germination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010212	response to ionizing radiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010332	response to gamma radiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010582	floral meristem determinacy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010647	positive regulation of cell communication	IEP	Predict GO terms from Neighborhoods
BP	GO:0010720	positive regulation of cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010770	positive regulation of cell morphogenesis involved in differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010971	positive regulation of G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
CC	GO:0015630	microtubule cytoskeleton	IEP	Predict GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016444	somatic cell DNA recombination	IEP	Predict GO terms from Neighborhoods
CC	GO:0016514	SWI/SNF complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0016579	protein deubiquitination	IEP	Predict GO terms from Neighborhoods
CC	GO:0016604	nuclear body	IEP	Predict GO terms from Neighborhoods
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0019908	nuclear cyclin-dependent protein kinase holoenzyme complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0023056	positive regulation of signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0030099	myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0030374	nuclear receptor coactivator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031058	positive regulation of histone modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0031062	positive regulation of histone methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031346	positive regulation of cell projection organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031398	positive regulation of protein ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0031399	regulation of protein modification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031401	positive regulation of protein modification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032784	regulation of DNA-templated transcription elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Predict GO terms from Neighborhoods
CC	GO:0032806	carboxy-terminal domain protein kinase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0032984	protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0032986	protein-DNA complex disassembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0034211	GTP-dependent protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034471	ncRNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0035148	tube formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0036260	RNA capping	IEP	Predict GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042325	regulation of phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043122	regulation of I-kappaB kinase/NF-kappaB signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	IEP	Predict GO terms from Neighborhoods
MF	GO:0043175	RNA polymerase core enzyme binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0043388	positive regulation of DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043922	negative regulation by host of viral transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0043966	histone H3 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043967	histone H4 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043983	histone H4-K12 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044154	histone H3-K14 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045446	endothelial cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045931	positive regulation of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0048013	ephrin receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0048814	regulation of dendrite morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050727	regulation of inflammatory response	IEP	Predict GO terms from Neighborhoods
BP	GO:0050767	regulation of neurogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050769	positive regulation of neurogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050773	regulation of dendrite development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050775	positive regulation of dendrite morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0051037	regulation of transcription involved in meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051039	positive regulation of transcription involved in meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051094	positive regulation of developmental process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051099	positive regulation of binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051101	regulation of DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051851	modulation by host of symbiont process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051896	regulation of protein kinase B signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0051897	positive regulation of protein kinase B signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0051962	positive regulation of nervous system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060026	convergent extension	IEP	Predict GO terms from Neighborhoods
BP	GO:0060027	convergent extension involved in gastrulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060606	tube closure	IEP	Predict GO terms from Neighborhoods
MF	GO:0061578	Lys63-specific deubiquitinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061982	meiosis I cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0065004	protein-DNA complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0070063	RNA polymerase binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0070577	lysine-acetylated histone binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0070646	protein modification by small protein removal	IEP	Predict GO terms from Neighborhoods
BP	GO:0071479	cellular response to ionizing radiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071480	cellular response to gamma radiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0071564	npBAF complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071565	nBAF complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0097150	neuronal stem cell population maintenance	IEP	Predict GO terms from Neighborhoods
MF	GO:0099122	RNA polymerase II C-terminal domain binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0106140	P-TEFb complex binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0140013	meiotic nuclear division	IEP	Predict GO terms from Neighborhoods
MF	GO:0140030	modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0140033	acetylation-dependent protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1901407	regulation of phosphorylation of RNA polymerase II C-terminal domain	IEP	Predict GO terms from Neighborhoods
BP	GO:1901976	regulation of cell cycle checkpoint	IEP	Predict GO terms from Neighborhoods
BP	GO:1901977	negative regulation of cell cycle checkpoint	IEP	Predict GO terms from Neighborhoods
BP	GO:1901989	positive regulation of cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901992	positive regulation of mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:1902533	positive regulation of intracellular signal transduction	IEP	Predict GO terms from Neighborhoods
CC	GO:1902554	serine/threonine protein kinase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902749	regulation of cell cycle G2/M phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902751	positive regulation of cell cycle G2/M phase transition	IEP	Predict GO terms from Neighborhoods
CC	GO:1902911	protein kinase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1903322	positive regulation of protein modification by small protein conjugation or removal	IEP	Predict GO terms from Neighborhoods
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
CC	GO:1904949	ATPase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:1990380	Lys48-specific deubiquitinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2000001	regulation of DNA damage checkpoint	IEP	Predict GO terms from Neighborhoods
BP	GO:2000002	negative regulation of DNA damage checkpoint	IEP	Predict GO terms from Neighborhoods
BP	GO:2001021	negative regulation of response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:2001253	regulation of histone H3-K36 trimethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2001255	positive regulation of histone H3-K36 trimethylation	IEP	Predict GO terms from Neighborhoods

No InterPro domains available for this sequence

External Links

No external refs found!

SOLTUB.AGRIA.G00000011247

Expression Profile

Co-expression Networks

Functional Annotation