SOLTUB.AGRIA.G00000011427

Description : ATP-dependent zinc metalloprotease FtsH

Gene families : OG_02_0008415 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000011427
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_27

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004176	ATP-dependent peptidase activity	IEA	AHRD
MF	GO:0004222	metalloendopeptidase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005745	m-AAA complex	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006457	protein folding	IEA	AHRD
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006839	mitochondrial transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0007049	cell cycle	IEA	AHRD
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0008270	zinc ion binding	IEA	AHRD
BP	GO:0008283	cell population proliferation	IEA	AHRD
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009535	chloroplast thylakoid membrane	IEA	AHRD
CC	GO:0009941	chloroplast envelope	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010073	meristem maintenance	IEA	AHRD
BP	GO:0010304	PSII associated light-harvesting complex II catabolic process	IEA	AHRD
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016485	protein processing	None	Extended
CC	GO:0016604	nuclear body	IEA	AHRD
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030150	protein import into mitochondrial matrix	IEA	AHRD
BP	GO:0030163	protein catabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031942	i-AAA complex	IEA	AHRD
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034214	protein hexamerization	IEA	AHRD
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034982	mitochondrial protein processing	IEA	AHRD
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
BP	GO:0035694	mitochondrial protein catabolic process	IEA	AHRD
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0042981	regulation of apoptotic process	None	Extended
BP	GO:0043066	negative regulation of apoptotic process	IEA	AHRD
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043069	negative regulation of programmed cell death	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044743	protein transmembrane import into intracellular organelle	None	Extended
BP	GO:0045041	protein import into mitochondrial intermembrane space	IEA	AHRD
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051259	protein complex oligomerization	None	Extended
BP	GO:0051301	cell division	IEA	AHRD
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051604	protein maturation	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0065002	intracellular protein transmembrane transport	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070585	protein localization to mitochondrion	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071806	protein transmembrane transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072655	establishment of protein localization to mitochondrion	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098798	mitochondrial protein-containing complex	None	Extended
CC	GO:0098800	inner mitochondrial membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905368	peptidase complex	None	Extended
BP	GO:1990542	mitochondrial transmembrane transport	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000177	cytoplasmic exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
CC	GO:0000178	exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000963	mitochondrial RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000966	RNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000967	rRNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004521	endoribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005353	fructose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005354	galactose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005355	glucose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005365	myo-inositol transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005402	carbohydrate:cation symporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006605	protein targeting	IEP	Predict GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008312	7S RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008320	protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008645	hexose transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008995	ribonuclease E activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008996	ribonuclease G activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009532	plastid stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009536	plastid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009543	chloroplast thylakoid lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0009570	chloroplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:0009657	plastid organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009658	chloroplast organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009668	plastid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010027	thylakoid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010196	nonphotochemical quenching	IEP	Predict GO terms from Neighborhoods
BP	GO:0010239	chloroplast mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0010343	singlet oxygen-mediated programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0010467	gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	Predict GO terms from Neighborhoods
MF	GO:0015145	monosaccharide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015146	pentose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015148	D-xylose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015149	hexose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015166	polyol transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015295	solute:proton symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015450	protein-transporting ATPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015462	ABC-type protein transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015749	monosaccharide transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015755	fructose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015791	polyol transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015994	chlorophyll metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0016021	integral component of membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016464	chloroplast protein-transporting ATPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Predict GO terms from Neighborhoods
BP	GO:0017038	protein import	IEP	Predict GO terms from Neighborhoods
MF	GO:0017151	DEAD/H-box RNA helicase binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0031224	intrinsic component of membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031425	chloroplast RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031426	polycistronic mRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0031522	cell envelope Sec protein transport complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031969	chloroplast membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031977	thylakoid lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0031978	plastid thylakoid lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0033354	chlorophyll cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0034471	ncRNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0036260	RNA capping	IEP	Predict GO terms from Neighborhoods
BP	GO:0036473	cell death in response to oxidative stress	IEP	Predict GO terms from Neighborhoods
CC	GO:0042644	chloroplast nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042646	plastid nucleoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0043462	regulation of ATP-dependent activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043489	RNA stabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0043952	protein transport by the Sec complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0045036	protein targeting to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0045037	protein import into chloroplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048255	mRNA stabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051095	regulation of helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052592	oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0072598	protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0090351	seedling development	IEP	Predict GO terms from Neighborhoods
MF	GO:0090415	7-hydroxymethyl chlorophyll a reductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0097468	programmed cell death in response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
BP	GO:0140053	mitochondrial gene expression	IEP	Predict GO terms from Neighborhoods
MF	GO:0140318	protein transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901259	chloroplast rRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:1901618	organic hydroxy compound transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902280	regulation of RNA helicase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902369	negative regulation of RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902373	negative regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903008	organelle disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1903312	negative regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904659	glucose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904821	chloroplast disassembly	IEP	Predict GO terms from Neighborhoods
CC	GO:1905354	exoribonuclease complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1990061	bacterial degradosome	IEP	Predict GO terms from Neighborhoods
BP	GO:1990066	energy quenching	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR005936	FtsH	306	787
IPR037219	Peptidase_M41-like	612	788
IPR000642	Peptidase_M41	611	786
IPR041569	AAA_lid_3	552	590
IPR003959	ATPase_AAA_core	401	529
IPR027417	P-loop_NTPase	363	631

External Links

No external refs found!

SOLTUB.AGRIA.G00000011427

Expression Profile

Co-expression Networks

Functional Annotation