SOLTUB.AGRIA.G00000012211

Description : Regulator of chromosome condensation (RCC1) family protein

Gene families : OG_02_0008662 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000012211
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_121

Type	GO Term	Name	Evidence	Source
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
MF	GO:0005543	phospholipid binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
CC	GO:0005856	cytoskeleton	IEA	AHRD
CC	GO:0005929	cilium	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008289	lipid binding	None	Extended
BP	GO:0009966	regulation of signal transduction	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
CC	GO:0016020	membrane	IEA	AHRD
BP	GO:0016043	cellular component organization	IEA	AHRD
MF	GO:0016301	kinase activity	IEA	AHRD
BP	GO:0016567	protein ubiquitination	IEA	AHRD
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0030154	cell differentiation	IEA	AHRD
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030695	GTPase regulator activity	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	IEA	AHRD
BP	GO:0031347	regulation of defense response	None	Extended
CC	GO:0031974	membrane-enclosed lumen	None	Extended
CC	GO:0031981	nuclear lumen	IEA	AHRD
BP	GO:0032020	ISG15-protein conjugation	IEA	AHRD
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035091	phosphatidylinositol binding	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0042296	ISG15 transferase activity	IEA	AHRD
CC	GO:0042995	cell projection	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0043233	organelle lumen	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048513	animal organ development	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	IEA	AHRD
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050688	regulation of defense response to virus	IEA	AHRD
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	IEA	AHRD
BP	GO:0050794	regulation of cellular process	None	Extended
MF	GO:0060589	nucleoside-triphosphatase regulator activity	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	IEA	AHRD
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
CC	GO:0070013	intracellular organelle lumen	None	Extended
MF	GO:0070300	phosphatidic acid binding	IEA	AHRD
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0090304	nucleic acid metabolic process	IEA	AHRD
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0000127	transcription factor TFIIIC complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0000293	ferric-chelate reductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0000902	cell morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0005881	cytoplasmic microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0005996	monosaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006012	galactose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0006383	transcription by RNA polymerase III	IEP	Predict GO terms from Neighborhoods
BP	GO:0006723	cuticle hydrocarbon biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006801	superoxide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006826	iron ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006879	cellular iron ion homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0008378	galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008643	carbohydrate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0009269	response to desiccation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009303	rRNA transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0009304	tRNA transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0009311	oligosaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009828	plant-type cell wall loosening	IEP	Predict GO terms from Neighborhoods
BP	GO:0009846	pollen germination	IEP	Predict GO terms from Neighborhoods
BP	GO:0009913	epidermal cell differentiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0010005	cortical microtubule, transverse to long axis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010053	root epidermal cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010091	trichome branching	IEP	Predict GO terms from Neighborhoods
BP	GO:0010325	raffinose family oligosaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0015772	oligosaccharide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015773	raffinose transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0016174	NAD(P)H oxidase H2O2-forming activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Predict GO terms from Neighborhoods
MF	GO:0016722	oxidoreductase activity, acting on metal ions	IEP	Predict GO terms from Neighborhoods
BP	GO:0019318	hexose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022900	electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0030855	epithelial cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030865	cortical cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031122	cytoplasmic microtubule organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0033212	iron import into cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0033214	siderophore-dependent iron import into cell	IEP	Predict GO terms from Neighborhoods
MF	GO:0035250	UDP-galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042631	cellular response to water deprivation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042791	5S class rRNA transcription by RNA polymerase III	IEP	Predict GO terms from Neighborhoods
BP	GO:0042797	tRNA transcription by RNA polymerase III	IEP	Predict GO terms from Neighborhoods
BP	GO:0043473	pigmentation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043476	pigment accumulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043478	pigment accumulation in response to UV light	IEP	Predict GO terms from Neighborhoods
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	Predict GO terms from Neighborhoods
BP	GO:0043480	pigment accumulation in tissues	IEP	Predict GO terms from Neighborhoods
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	Predict GO terms from Neighborhoods
BP	GO:0043622	cortical microtubule organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045596	negative regulation of cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0047216	inositol 3-alpha-galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048469	cell maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048497	maintenance of floral organ identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048764	trichoblast maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048765	root hair cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048825	cotyledon development	IEP	Predict GO terms from Neighborhoods
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0052575	carbohydrate localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0052576	carbohydrate storage	IEP	Predict GO terms from Neighborhoods
CC	GO:0055028	cortical microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0055072	iron ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055076	transition metal ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0070417	cellular response to cold	IEP	Predict GO terms from Neighborhoods
BP	GO:0071229	cellular response to acid chemical	IEP	Predict GO terms from Neighborhoods
BP	GO:0071462	cellular response to water stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071465	cellular response to desiccation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071554	cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0080050	regulation of seed development	IEP	Predict GO terms from Neighborhoods
CC	GO:0090576	RNA polymerase III transcription regulator complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0090700	maintenance of plant organ identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0098781	ncRNA transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:1901678	iron coordination entity transport	IEP	Predict GO terms from Neighborhoods
BP	GO:2000033	regulation of seed dormancy process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000034	regulation of seed maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:2001088	trisaccharide transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR009091	RCC1/BLIP-II	257	646
IPR000408	Reg_chr_condens	492	538
IPR000408	Reg_chr_condens	370	422
IPR000408	Reg_chr_condens	595	642
IPR000408	Reg_chr_condens	542	588
IPR000408	Reg_chr_condens	319	366
IPR000408	Reg_chr_condens	426	474
IPR011011	Znf_FYVE_PHD	650	716
IPR000306	Znf_FYVE	652	712

External Links

No external refs found!

SOLTUB.AGRIA.G00000012211

Expression Profile

Co-expression Networks

Functional Annotation