SOLTUB.AGRIA.G00000012217


Description : Zinc finger CCCH domain protein


Gene families : OG_02_0019254 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000012217
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_192


Type GO Term Name Evidence Source
BP GO:0000165 MAPK cascade IEA AHRD
BP GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA AHRD
MF GO:0003676 nucleic acid binding IEA AHRD
MF GO:0003677 DNA binding IEA AHRD
MF GO:0003700 DNA-binding transcription factor activity IEA AHRD
MF GO:0003723 RNA binding IEA AHRD
MF GO:0003729 mRNA binding IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005634 nucleus IEA AHRD
CC GO:0005737 cytoplasm IEA AHRD
BP GO:0006355 regulation of DNA-templated transcription IEA AHRD
BP GO:0006402 mRNA catabolic process IEA AHRD
BP GO:0009611 response to wounding IEA AHRD
BP GO:0010468 regulation of gene expression IEA AHRD
BP GO:0030097 hemopoiesis IEA AHRD
BP GO:0031086 nuclear-transcribed mRNA catabolic process, deadenylation-independent decay IEA AHRD
BP GO:0033077 T cell differentiation in thymus IEA AHRD
BP GO:0035019 somatic stem cell population maintenance IEA AHRD
MF GO:0035925 mRNA 3'-UTR AU-rich region binding IEA AHRD
BP GO:0039020 pronephric nephron tubule development IEA AHRD
BP GO:0043488 regulation of mRNA stability IEA AHRD
BP GO:0044344 cellular response to fibroblast growth factor stimulus IEA AHRD
BP GO:0045577 regulation of B cell differentiation IEA AHRD
BP GO:0045599 negative regulation of fat cell differentiation IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
BP GO:0048103 somatic stem cell division IEA AHRD
BP GO:0048793 pronephros development IEA AHRD
BP GO:0060216 definitive hemopoiesis IEA AHRD
BP GO:0061158 3'-UTR-mediated mRNA destabilization IEA AHRD
BP GO:0070371 ERK1 and ERK2 cascade IEA AHRD
BP GO:0071356 cellular response to tumor necrosis factor IEA AHRD
BP GO:0071364 cellular response to epidermal growth factor stimulus IEA AHRD
BP GO:0071385 cellular response to glucocorticoid stimulus IEA AHRD
BP GO:0071560 cellular response to transforming growth factor beta stimulus IEA AHRD
BP GO:0072080 nephron tubule development IEA AHRD
BP GO:0097011 cellular response to granulocyte macrophage colony-stimulating factor stimulus IEA AHRD
BP GO:1900057 positive regulation of leaf senescence IEA AHRD
BP GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA AHRD
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEA AHRD
BP GO:2000028 regulation of photoperiodism, flowering IEA AHRD
BP GO:2000737 negative regulation of stem cell differentiation IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000070 mitotic sister chromatid segregation IEP Predict GO terms from Neighborhoods
MF GO:0000293 ferric-chelate reductase activity IEP Predict GO terms from Neighborhoods
CC GO:0000792 heterochromatin IEP Predict GO terms from Neighborhoods
BP GO:0000819 sister chromatid segregation IEP Predict GO terms from Neighborhoods
BP GO:0001525 angiogenesis IEP Predict GO terms from Neighborhoods
BP GO:0001819 positive regulation of cytokine production IEP Predict GO terms from Neighborhoods
BP GO:0001990 regulation of systemic arterial blood pressure by hormone IEP Predict GO terms from Neighborhoods
BP GO:0003044 regulation of systemic arterial blood pressure mediated by a chemical signal IEP Predict GO terms from Neighborhoods
BP GO:0003073 regulation of systemic arterial blood pressure IEP Predict GO terms from Neighborhoods
BP GO:0003081 regulation of systemic arterial blood pressure by renin-angiotensin IEP Predict GO terms from Neighborhoods
MF GO:0003993 acid phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0004721 phosphoprotein phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0005506 iron ion binding IEP Predict GO terms from Neighborhoods
CC GO:0005615 extracellular space IEP Predict GO terms from Neighborhoods
CC GO:0005773 vacuole IEP Predict GO terms from Neighborhoods
BP GO:0006801 superoxide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006826 iron ion transport IEP Predict GO terms from Neighborhoods
BP GO:0006879 cellular iron ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0006885 regulation of pH IEP Predict GO terms from Neighborhoods
BP GO:0007059 chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0007063 regulation of sister chromatid cohesion IEP Predict GO terms from Neighborhoods
BP GO:0007154 cell communication IEP Predict GO terms from Neighborhoods
MF GO:0008199 ferric iron binding IEP Predict GO terms from Neighborhoods
BP GO:0008217 regulation of blood pressure IEP Predict GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Predict GO terms from Neighborhoods
BP GO:0009267 cellular response to starvation IEP Predict GO terms from Neighborhoods
BP GO:0009268 response to pH IEP Predict GO terms from Neighborhoods
BP GO:0009269 response to desiccation IEP Predict GO terms from Neighborhoods
BP GO:0009767 photosynthetic electron transport chain IEP Predict GO terms from Neighborhoods
BP GO:0009991 response to extracellular stimulus IEP Predict GO terms from Neighborhoods
BP GO:0010447 response to acidic pH IEP Predict GO terms from Neighborhoods
BP GO:0010574 regulation of vascular endothelial growth factor production IEP Predict GO terms from Neighborhoods
BP GO:0010575 positive regulation of vascular endothelial growth factor production IEP Predict GO terms from Neighborhoods
BP GO:0016036 cellular response to phosphate starvation IEP Predict GO terms from Neighborhoods
MF GO:0016174 NAD(P)H oxidase H2O2-forming activity IEP Predict GO terms from Neighborhoods
MF GO:0016175 superoxide-generating NAD(P)H oxidase activity IEP Predict GO terms from Neighborhoods
BP GO:0016311 dephosphorylation IEP Predict GO terms from Neighborhoods
MF GO:0016722 oxidoreductase activity, acting on metal ions IEP Predict GO terms from Neighborhoods
MF GO:0016723 oxidoreductase activity, acting on metal ions, NAD or NADP as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016791 phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0030145 manganese ion binding IEP Predict GO terms from Neighborhoods
BP GO:0030198 extracellular matrix organization IEP Predict GO terms from Neighborhoods
BP GO:0030435 sporulation resulting in formation of a cellular spore IEP Predict GO terms from Neighborhoods
BP GO:0030641 regulation of cellular pH IEP Predict GO terms from Neighborhoods
BP GO:0031503 protein-containing complex localization IEP Predict GO terms from Neighborhoods
BP GO:0031668 cellular response to extracellular stimulus IEP Predict GO terms from Neighborhoods
BP GO:0031669 cellular response to nutrient levels IEP Predict GO terms from Neighborhoods
BP GO:0032872 regulation of stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0032874 positive regulation of stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0033212 iron import into cell IEP Predict GO terms from Neighborhoods
BP GO:0033214 siderophore-dependent iron import into cell IEP Predict GO terms from Neighborhoods
BP GO:0033554 cellular response to stress IEP Predict GO terms from Neighborhoods
BP GO:0034091 regulation of maintenance of sister chromatid cohesion IEP Predict GO terms from Neighborhoods
BP GO:0034093 positive regulation of maintenance of sister chromatid cohesion IEP Predict GO terms from Neighborhoods
BP GO:0034501 protein localization to kinetochore IEP Predict GO terms from Neighborhoods
BP GO:0034502 protein localization to chromosome IEP Predict GO terms from Neighborhoods
MF GO:0035173 histone kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0035184 histone threonine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0035402 histone kinase activity (H3-T11 specific) IEP Predict GO terms from Neighborhoods
BP GO:0035407 obsolete histone H3-T11 phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0036295 cellular response to increased oxygen levels IEP Predict GO terms from Neighborhoods
BP GO:0036296 response to increased oxygen levels IEP Predict GO terms from Neighborhoods
BP GO:0042554 superoxide anion generation IEP Predict GO terms from Neighborhoods
MF GO:0042578 phosphoric ester hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0042592 homeostatic process IEP Predict GO terms from Neighborhoods
BP GO:0042594 response to starvation IEP Predict GO terms from Neighborhoods
BP GO:0042742 defense response to bacterium IEP Predict GO terms from Neighborhoods
CC GO:0043020 NADPH oxidase complex IEP Predict GO terms from Neighborhoods
BP GO:0043062 extracellular structure organization IEP Predict GO terms from Neighborhoods
BP GO:0045113 regulation of integrin biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0045121 membrane raft IEP Predict GO terms from Neighborhoods
BP GO:0045726 positive regulation of integrin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045876 positive regulation of sister chromatid cohesion IEP Predict GO terms from Neighborhoods
BP GO:0046328 regulation of JNK cascade IEP Predict GO terms from Neighborhoods
BP GO:0046330 positive regulation of JNK cascade IEP Predict GO terms from Neighborhoods
BP GO:0048660 regulation of smooth muscle cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0048661 positive regulation of smooth muscle cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0048878 chemical homeostasis IEP Predict GO terms from Neighborhoods
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predict GO terms from Neighborhoods
BP GO:0050801 ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0050829 defense response to Gram-negative bacterium IEP Predict GO terms from Neighborhoods
BP GO:0050886 endocrine process IEP Predict GO terms from Neighborhoods
BP GO:0051130 positive regulation of cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0051174 regulation of phosphorus metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051453 regulation of intracellular pH IEP Predict GO terms from Neighborhoods
BP GO:0051454 intracellular pH elevation IEP Predict GO terms from Neighborhoods
BP GO:0055062 phosphate ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055072 iron ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055081 anion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055093 response to hyperoxia IEP Predict GO terms from Neighborhoods
BP GO:0070302 regulation of stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0070304 positive regulation of stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0071214 cellular response to abiotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071455 cellular response to hyperoxia IEP Predict GO terms from Neighborhoods
BP GO:0071459 protein localization to chromosome, centromeric region IEP Predict GO terms from Neighborhoods
BP GO:0071465 cellular response to desiccation IEP Predict GO terms from Neighborhoods
BP GO:0071467 cellular response to pH IEP Predict GO terms from Neighborhoods
BP GO:0071468 cellular response to acidic pH IEP Predict GO terms from Neighborhoods
BP GO:0071496 cellular response to external stimulus IEP Predict GO terms from Neighborhoods
MF GO:0072354 histone kinase activity (H3-T3 specific) IEP Predict GO terms from Neighborhoods
BP GO:0072355 obsolete histone H3-T3 phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0072356 chromosome passenger complex localization to kinetochore IEP Predict GO terms from Neighborhoods
BP GO:0072506 trivalent inorganic anion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0072592 oxygen metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0080147 root hair cell development IEP Predict GO terms from Neighborhoods
BP GO:0098771 inorganic ion homeostasis IEP Predict GO terms from Neighborhoods
CC GO:0098797 plasma membrane protein complex IEP Predict GO terms from Neighborhoods
BP GO:0098813 nuclear chromosome segregation IEP Predict GO terms from Neighborhoods
CC GO:0098857 membrane microdomain IEP Predict GO terms from Neighborhoods
BP GO:0104004 cellular response to environmental stimulus IEP Predict GO terms from Neighborhoods
MF GO:0140096 catalytic activity, acting on a protein IEP Predict GO terms from Neighborhoods
MF GO:0140618 ferric-chelate reductase (NADH) activity IEP Predict GO terms from Neighborhoods
BP GO:1900407 regulation of cellular response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:1901678 iron coordination entity transport IEP Predict GO terms from Neighborhoods
BP GO:1902075 cellular response to salt IEP Predict GO terms from Neighborhoods
BP GO:1902175 regulation of oxidative stress-induced intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1902177 positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1902806 regulation of cell cycle G1/S phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902807 negative regulation of cell cycle G1/S phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902882 regulation of response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:1903083 protein localization to condensed chromosome IEP Predict GO terms from Neighborhoods
BP GO:1903201 regulation of oxidative stress-induced cell death IEP Predict GO terms from Neighborhoods
BP GO:1903209 positive regulation of oxidative stress-induced cell death IEP Predict GO terms from Neighborhoods
BP GO:1990451 cellular stress response to acidic pH IEP Predict GO terms from Neighborhoods
BP GO:2000045 regulation of G1/S transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:2000134 negative regulation of G1/S transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:2000379 positive regulation of reactive oxygen species metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2001235 positive regulation of apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001242 regulation of intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001244 positive regulation of intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001252 positive regulation of chromosome organization IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR036855 Znf_CCCH_sf 105 138
IPR000571 Znf_CCCH 51 75
IPR000571 Znf_CCCH 109 134
IPR036855 Znf_CCCH_sf 49 79
No external refs found!