SOLTUB.AGRIA.G00000013520


Description : Katanin p80 WD40 repeat-containing subunit B1 homolog


Gene families : OG_02_0014072 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000013520
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_261


Type GO Term Name Evidence Source
CC GO:0000922 spindle pole IEA AHRD
CC GO:0005681 spliceosomal complex IEA AHRD
CC GO:0005813 centrosome IEA AHRD
CC GO:0005829 cytosol IEA AHRD
CC GO:0005874 microtubule IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
BP GO:0006396 RNA processing IEA AHRD
BP GO:0006605 protein targeting IEA AHRD
BP GO:0007026 negative regulation of microtubule depolymerization IEA AHRD
BP GO:0007049 cell cycle IEA AHRD
MF GO:0008017 microtubule binding IEA AHRD
CC GO:0008352 katanin complex IEA AHRD
BP GO:0009651 response to salt stress IEA AHRD
BP GO:0009737 response to abscisic acid IEA AHRD
BP GO:0010942 positive regulation of cell death IEA AHRD
BP GO:0010976 positive regulation of neuron projection development IEA AHRD
CC GO:0030426 growth cone IEA AHRD
CC GO:0030496 midbody IEA AHRD
BP GO:0030901 midbrain development IEA AHRD
BP GO:0031117 positive regulation of microtubule depolymerization IEA AHRD
CC GO:0031981 nuclear lumen IEA AHRD
CC GO:0043025 neuronal cell body IEA AHRD
MF GO:0046982 protein heterodimerization activity IEA AHRD
BP GO:0051013 microtubule severing IEA AHRD
BP GO:0051510 regulation of unidimensional cell growth IEA AHRD
MF GO:0060590 ATPase regulator activity IEA AHRD
MF GO:0070840 dynein complex binding IEA AHRD
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000001 mitochondrion inheritance IEP Predict GO terms from Neighborhoods
CC GO:0000138 Golgi trans cisterna IEP Predict GO terms from Neighborhoods
CC GO:0000242 pericentriolar material IEP Predict GO terms from Neighborhoods
BP GO:0000266 mitochondrial fission IEP Predict GO terms from Neighborhoods
BP GO:0000278 mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0000919 cell plate assembly IEP Predict GO terms from Neighborhoods
MF GO:0001664 G protein-coupled receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0001822 kidney development IEP Predict GO terms from Neighborhoods
CC GO:0001917 photoreceptor inner segment IEP Predict GO terms from Neighborhoods
BP GO:0002031 G protein-coupled receptor internalization IEP Predict GO terms from Neighborhoods
BP GO:0003002 regionalization IEP Predict GO terms from Neighborhoods
BP GO:0003006 developmental process involved in reproduction IEP Predict GO terms from Neighborhoods
MF GO:0004672 protein kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0005102 signaling receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0005201 extracellular matrix structural constituent IEP Predict GO terms from Neighborhoods
MF GO:0005496 steroid binding IEP Predict GO terms from Neighborhoods
CC GO:0005604 basement membrane IEP Predict GO terms from Neighborhoods
CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005741 mitochondrial outer membrane IEP Predict GO terms from Neighborhoods
CC GO:0005776 autophagosome IEP Predict GO terms from Neighborhoods
CC GO:0005777 peroxisome IEP Predict GO terms from Neighborhoods
CC GO:0005819 spindle IEP Predict GO terms from Neighborhoods
CC GO:0005881 cytoplasmic microtubule IEP Predict GO terms from Neighborhoods
CC GO:0005911 cell-cell junction IEP Predict GO terms from Neighborhoods
CC GO:0005935 cellular bud neck IEP Predict GO terms from Neighborhoods
BP GO:0006468 protein phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0006664 glycolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006665 sphingolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006687 glycosphingolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006699 bile acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006812 cation transport IEP Predict GO terms from Neighborhoods
BP GO:0006887 exocytosis IEP Predict GO terms from Neighborhoods
BP GO:0006897 endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0006900 vesicle budding from membrane IEP Predict GO terms from Neighborhoods
BP GO:0006914 autophagy IEP Predict GO terms from Neighborhoods
BP GO:0007032 endosome organization IEP Predict GO terms from Neighborhoods
BP GO:0007163 establishment or maintenance of cell polarity IEP Predict GO terms from Neighborhoods
BP GO:0007389 pattern specification process IEP Predict GO terms from Neighborhoods
BP GO:0007411 axon guidance IEP Predict GO terms from Neighborhoods
BP GO:0007417 central nervous system development IEP Predict GO terms from Neighborhoods
CC GO:0008021 synaptic vesicle IEP Predict GO terms from Neighborhoods
BP GO:0008202 steroid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0008206 bile acid metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008238 exopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008422 beta-glucosidase activity IEP Predict GO terms from Neighborhoods
CC GO:0009504 cell plate IEP Predict GO terms from Neighborhoods
CC GO:0009506 plasmodesma IEP Predict GO terms from Neighborhoods
CC GO:0009514 glyoxysome IEP Predict GO terms from Neighborhoods
CC GO:0009524 phragmoplast IEP Predict GO terms from Neighborhoods
CC GO:0009551 secondary plasmodesma IEP Predict GO terms from Neighborhoods
BP GO:0009663 plasmodesma organization IEP Predict GO terms from Neighborhoods
BP GO:0009786 regulation of asymmetric cell division IEP Predict GO terms from Neighborhoods
BP GO:0009888 tissue development IEP Predict GO terms from Neighborhoods
BP GO:0009913 epidermal cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0009920 cell plate formation involved in plant-type cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010001 glial cell differentiation IEP Predict GO terms from Neighborhoods
CC GO:0010005 cortical microtubule, transverse to long axis IEP Predict GO terms from Neighborhoods
CC GO:0010008 endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0010036 response to boron-containing substance IEP Predict GO terms from Neighborhoods
BP GO:0010051 xylem and phloem pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010065 primary meristem tissue development IEP Predict GO terms from Neighborhoods
BP GO:0010067 procambium histogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010068 protoderm histogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010088 phloem development IEP Predict GO terms from Neighborhoods
BP GO:0010152 pollen maturation IEP Predict GO terms from Neighborhoods
BP GO:0010311 lateral root formation IEP Predict GO terms from Neighborhoods
BP GO:0010364 regulation of ethylene biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010366 negative regulation of ethylene biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010496 intercellular transport IEP Predict GO terms from Neighborhoods
BP GO:0010497 plasmodesmata-mediated intercellular transport IEP Predict GO terms from Neighborhoods
BP GO:0010646 regulation of cell communication IEP Predict GO terms from Neighborhoods
BP GO:0010647 positive regulation of cell communication IEP Predict GO terms from Neighborhoods
CC GO:0012506 vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0014037 Schwann cell differentiation IEP Predict GO terms from Neighborhoods
MF GO:0015101 organic cation transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015220 choline transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015248 sterol transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015485 cholesterol binding IEP Predict GO terms from Neighborhoods
BP GO:0015695 organic cation transport IEP Predict GO terms from Neighborhoods
BP GO:0015871 choline transport IEP Predict GO terms from Neighborhoods
BP GO:0015886 heme transport IEP Predict GO terms from Neighborhoods
BP GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane IEP Predict GO terms from Neighborhoods
BP GO:0016192 vesicle-mediated transport IEP Predict GO terms from Neighborhoods
BP GO:0016236 macroautophagy IEP Predict GO terms from Neighborhoods
BP GO:0016237 lysosomal microautophagy IEP Predict GO terms from Neighborhoods
MF GO:0016301 kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0016310 phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0016559 peroxisome fission IEP Predict GO terms from Neighborhoods
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0017124 SH3 domain binding IEP Predict GO terms from Neighborhoods
BP GO:0017157 regulation of exocytosis IEP Predict GO terms from Neighborhoods
MF GO:0019899 enzyme binding IEP Predict GO terms from Neighborhoods
MF GO:0019900 kinase binding IEP Predict GO terms from Neighborhoods
MF GO:0019901 protein kinase binding IEP Predict GO terms from Neighborhoods
BP GO:0023051 regulation of signaling IEP Predict GO terms from Neighborhoods
BP GO:0023056 positive regulation of signaling IEP Predict GO terms from Neighborhoods
BP GO:0030010 establishment of cell polarity IEP Predict GO terms from Neighborhoods
BP GO:0030011 maintenance of cell polarity IEP Predict GO terms from Neighborhoods
BP GO:0030030 cell projection organization IEP Predict GO terms from Neighborhoods
CC GO:0030054 cell junction IEP Predict GO terms from Neighborhoods
BP GO:0030100 regulation of endocytosis IEP Predict GO terms from Neighborhoods
CC GO:0030117 membrane coat IEP Predict GO terms from Neighborhoods
CC GO:0030136 clathrin-coated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0030139 endocytic vesicle IEP Predict GO terms from Neighborhoods
MF GO:0030145 manganese ion binding IEP Predict GO terms from Neighborhoods
BP GO:0030154 cell differentiation IEP Predict GO terms from Neighborhoods
MF GO:0030276 clathrin binding IEP Predict GO terms from Neighborhoods
CC GO:0030659 cytoplasmic vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030667 secretory granule membrane IEP Predict GO terms from Neighborhoods
BP GO:0031175 neuron projection development IEP Predict GO terms from Neighborhoods
CC GO:0031312 extrinsic component of organelle membrane IEP Predict GO terms from Neighborhoods
BP GO:0031335 regulation of sulfur amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031336 negative regulation of sulfur amino acid metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0031594 neuromuscular junction IEP Predict GO terms from Neighborhoods
BP GO:0031623 receptor internalization IEP Predict GO terms from Neighborhoods
MF GO:0031749 D2 dopamine receptor binding IEP Predict GO terms from Neighborhoods
CC GO:0031901 early endosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0031985 Golgi cisterna IEP Predict GO terms from Neighborhoods
BP GO:0032222 regulation of synaptic transmission, cholinergic IEP Predict GO terms from Neighborhoods
BP GO:0032224 positive regulation of synaptic transmission, cholinergic IEP Predict GO terms from Neighborhoods
BP GO:0032271 regulation of protein polymerization IEP Predict GO terms from Neighborhoods
BP GO:0032365 intracellular lipid transport IEP Predict GO terms from Neighborhoods
BP GO:0032368 regulation of lipid transport IEP Predict GO terms from Neighborhoods
BP GO:0032371 regulation of sterol transport IEP Predict GO terms from Neighborhoods
BP GO:0032374 regulation of cholesterol transport IEP Predict GO terms from Neighborhoods
BP GO:0032501 multicellular organismal process IEP Predict GO terms from Neighborhoods
CC GO:0032541 cortical endoplasmic reticulum IEP Predict GO terms from Neighborhoods
CC GO:0032588 trans-Golgi network membrane IEP Predict GO terms from Neighborhoods
BP GO:0032878 regulation of establishment or maintenance of cell polarity IEP Predict GO terms from Neighborhoods
BP GO:0032879 regulation of localization IEP Predict GO terms from Neighborhoods
MF GO:0032934 sterol binding IEP Predict GO terms from Neighborhoods
CC GO:0034451 centriolar satellite IEP Predict GO terms from Neighborhoods
BP GO:0034727 piecemeal microautophagy of the nucleus IEP Predict GO terms from Neighborhoods
BP GO:0035264 multicellular organism growth IEP Predict GO terms from Neighborhoods
BP GO:0035621 ER to Golgi ceramide transport IEP Predict GO terms from Neighborhoods
BP GO:0035627 ceramide transport IEP Predict GO terms from Neighborhoods
BP GO:0036314 response to sterol IEP Predict GO terms from Neighborhoods
BP GO:0036315 cellular response to sterol IEP Predict GO terms from Neighborhoods
CC GO:0042383 sarcolemma IEP Predict GO terms from Neighborhoods
CC GO:0042579 microbody IEP Predict GO terms from Neighborhoods
CC GO:0042584 chromaffin granule membrane IEP Predict GO terms from Neighborhoods
BP GO:0042769 obsolete DNA damage response, detection of DNA damage IEP Predict GO terms from Neighborhoods
CC GO:0043083 synaptic cleft IEP Predict GO terms from Neighborhoods
MF GO:0043178 alcohol binding IEP Predict GO terms from Neighborhoods
CC GO:0043196 varicosity IEP Predict GO terms from Neighborhoods
CC GO:0043197 dendritic spine IEP Predict GO terms from Neighborhoods
MF GO:0043424 protein histidine kinase binding IEP Predict GO terms from Neighborhoods
CC GO:0044232 organelle membrane contact site IEP Predict GO terms from Neighborhoods
CC GO:0044309 neuron spine IEP Predict GO terms from Neighborhoods
BP GO:0044782 cilium organization IEP Predict GO terms from Neighborhoods
BP GO:0044804 autophagy of nucleus IEP Predict GO terms from Neighborhoods
CC GO:0045202 synapse IEP Predict GO terms from Neighborhoods
BP GO:0045216 cell-cell junction organization IEP Predict GO terms from Neighborhoods
CC GO:0045334 clathrin-coated endocytic vesicle IEP Predict GO terms from Neighborhoods
BP GO:0045807 positive regulation of endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0045920 negative regulation of exocytosis IEP Predict GO terms from Neighborhoods
BP GO:0048308 organelle inheritance IEP Predict GO terms from Neighborhoods
BP GO:0048311 mitochondrion distribution IEP Predict GO terms from Neighborhoods
BP GO:0048480 stigma development IEP Predict GO terms from Neighborhoods
BP GO:0048507 meristem development IEP Predict GO terms from Neighborhoods
BP GO:0048508 embryonic meristem development IEP Predict GO terms from Neighborhoods
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048766 root hair initiation IEP Predict GO terms from Neighborhoods
BP GO:0048829 root cap development IEP Predict GO terms from Neighborhoods
BP GO:0048840 otolith development IEP Predict GO terms from Neighborhoods
MF GO:0050780 dopamine receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0050804 modulation of chemical synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0050806 positive regulation of synaptic transmission IEP Predict GO terms from Neighborhoods
MF GO:0050998 nitric-oxide synthase binding IEP Predict GO terms from Neighborhoods
BP GO:0051048 negative regulation of secretion IEP Predict GO terms from Neighborhoods
BP GO:0051049 regulation of transport IEP Predict GO terms from Neighborhoods
BP GO:0051175 negative regulation of sulfur metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051646 mitochondrion localization IEP Predict GO terms from Neighborhoods
CC GO:0055028 cortical microtubule IEP Predict GO terms from Neighborhoods
BP GO:0060271 cilium assembly IEP Predict GO terms from Neighborhoods
BP GO:0060627 regulation of vesicle-mediated transport IEP Predict GO terms from Neighborhoods
BP GO:0061919 process utilizing autophagic mechanism IEP Predict GO terms from Neighborhoods
BP GO:0062014 negative regulation of small molecule metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0062023 collagen-containing extracellular matrix IEP Predict GO terms from Neighborhoods
BP GO:0070142 synaptic vesicle budding IEP Predict GO terms from Neighborhoods
CC GO:0070161 anchoring junction IEP Predict GO terms from Neighborhoods
CC GO:0070382 exocytic vesicle IEP Predict GO terms from Neighborhoods
BP GO:0070723 response to cholesterol IEP Predict GO terms from Neighborhoods
BP GO:0071397 cellular response to cholesterol IEP Predict GO terms from Neighborhoods
CC GO:0071561 nucleus-vacuole junction IEP Predict GO terms from Neighborhoods
CC GO:0071782 endoplasmic reticulum tubular network IEP Predict GO terms from Neighborhoods
MF GO:0071889 14-3-3 protein binding IEP Predict GO terms from Neighborhoods
BP GO:0072583 clathrin-dependent endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0080029 cellular response to boron-containing substance levels IEP Predict GO terms from Neighborhoods
BP GO:0080157 regulation of plant-type cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0090043 regulation of tubulin deacetylation IEP Predict GO terms from Neighborhoods
BP GO:0090311 regulation of protein deacetylation IEP Predict GO terms from Neighborhoods
BP GO:0090558 plant epidermis development IEP Predict GO terms from Neighborhoods
BP GO:0090603 sieve element differentiation IEP Predict GO terms from Neighborhoods
CC GO:0097038 perinuclear endoplasmic reticulum IEP Predict GO terms from Neighborhoods
CC GO:0097060 synaptic membrane IEP Predict GO terms from Neighborhoods
CC GO:0097218 sieve plate IEP Predict GO terms from Neighborhoods
CC GO:0097470 ribbon synapse IEP Predict GO terms from Neighborhoods
BP GO:0097485 neuron projection guidance IEP Predict GO terms from Neighborhoods
CC GO:0098588 bounding membrane of organelle IEP Predict GO terms from Neighborhoods
CC GO:0098590 plasma membrane region IEP Predict GO terms from Neighborhoods
CC GO:0098684 photoreceptor ribbon synapse IEP Predict GO terms from Neighborhoods
CC GO:0098794 postsynapse IEP Predict GO terms from Neighborhoods
CC GO:0098835 presynaptic endocytic zone membrane IEP Predict GO terms from Neighborhoods
BP GO:0099177 regulation of trans-synaptic signaling IEP Predict GO terms from Neighborhoods
MF GO:0106310 protein serine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0120013 lipid transfer activity IEP Predict GO terms from Neighborhoods
MF GO:0120015 sterol transfer activity IEP Predict GO terms from Neighborhoods
BP GO:0120031 plasma membrane bounded cell projection assembly IEP Predict GO terms from Neighborhoods
BP GO:0120036 plasma membrane bounded cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:1900242 regulation of synaptic vesicle endocytosis IEP Predict GO terms from Neighborhoods
BP GO:1900244 positive regulation of synaptic vesicle endocytosis IEP Predict GO terms from Neighborhoods
BP GO:1900457 regulation of brassinosteroid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1900459 positive regulation of brassinosteroid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1900908 regulation of olefin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1900909 negative regulation of olefin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1900911 regulation of olefin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1900912 negative regulation of olefin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901678 iron coordination entity transport IEP Predict GO terms from Neighborhoods
BP GO:1901976 regulation of cell cycle checkpoint IEP Predict GO terms from Neighborhoods
BP GO:1901998 toxin transport IEP Predict GO terms from Neighborhoods
BP GO:1903421 regulation of synaptic vesicle recycling IEP Predict GO terms from Neighborhoods
BP GO:1903423 positive regulation of synaptic vesicle recycling IEP Predict GO terms from Neighborhoods
BP GO:1903509 liposaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903531 negative regulation of secretion by cell IEP Predict GO terms from Neighborhoods
BP GO:1904645 response to amyloid-beta IEP Predict GO terms from Neighborhoods
BP GO:1905393 plant organ formation IEP Predict GO terms from Neighborhoods
BP GO:1905952 regulation of lipid localization IEP Predict GO terms from Neighborhoods
BP GO:2000001 regulation of DNA damage checkpoint IEP Predict GO terms from Neighborhoods
BP GO:2000114 regulation of establishment of cell polarity IEP Predict GO terms from Neighborhoods
BP GO:2000694 regulation of phragmoplast microtubule organization IEP Predict GO terms from Neighborhoods
BP GO:2000772 regulation of cellular senescence IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR028021 Katanin_C-terminal 650 807
IPR001680 WD40_repeat 10 46
IPR001680 WD40_repeat 94 130
IPR001680 WD40_repeat 54 88
IPR001680 WD40_repeat 176 214
IPR001680 WD40_repeat 136 172
IPR036322 WD40_repeat_dom_sf 8 296
No external refs found!