SOLTUB.AGRIA.G00000014180

Description : Pentatricopeptide repeat-containing protein

Gene families : OG_02_0005878 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000014180
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_229

Type	GO Term	Name	Evidence	Source
BP	GO:0003002	regionalization	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010051	xylem and phloem pattern formation	None	Extended
BP	GO:0010087	phloem or xylem histogenesis	IEA	AHRD
BP	GO:0010305	leaf vascular tissue pattern formation	IEA	AHRD
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	IEA	AHRD
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031425	chloroplast RNA processing	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1900865	chloroplast RNA modification	IEA	AHRD
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000118	histone deacetylase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000373	Group II intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002250	adaptive immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002443	leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002449	lymphocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002456	T cell mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002458	peripheral T cell tolerance induction	IEP	Predict GO terms from Neighborhoods
BP	GO:0002460	adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	IEP	Predict GO terms from Neighborhoods
BP	GO:0002461	tolerance induction dependent upon immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002465	peripheral tolerance induction	IEP	Predict GO terms from Neighborhoods
BP	GO:0002507	tolerance induction	IEP	Predict GO terms from Neighborhoods
BP	GO:0002508	central tolerance induction	IEP	Predict GO terms from Neighborhoods
BP	GO:0002509	central tolerance induction to self antigen	IEP	Predict GO terms from Neighborhoods
BP	GO:0002513	tolerance induction to self antigen	IEP	Predict GO terms from Neighborhoods
BP	GO:0002517	T cell tolerance induction	IEP	Predict GO terms from Neighborhoods
BP	GO:0002637	regulation of immunoglobulin production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002639	positive regulation of immunoglobulin production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002685	regulation of leukocyte migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0002696	positive regulation of leukocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002700	regulation of production of molecular mediator of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002702	positive regulation of production of molecular mediator of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002703	regulation of leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002705	positive regulation of leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002706	regulation of lymphocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002708	positive regulation of lymphocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002712	regulation of B cell mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002714	positive regulation of B cell mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002819	regulation of adaptive immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002821	positive regulation of adaptive immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002822	regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	IEP	Predict GO terms from Neighborhoods
BP	GO:0002824	positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	IEP	Predict GO terms from Neighborhoods
BP	GO:0002889	regulation of immunoglobulin mediated immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002891	positive regulation of immunoglobulin mediated immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0003149	membranous septum morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0003289	atrial septum primum morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0003290	atrial septum secundum morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0003941	L-serine ammonia-lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004326	tetrahydrofolylpolyglutamate synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004402	histone acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006563	L-serine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006565	L-serine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006730	one-carbon metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006959	humoral immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0007548	sex differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008080	N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008721	D-serine ammonia-lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009071	serine family amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009295	nucleoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009436	glyoxylate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009441	glycolate metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009508	plastid chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0009853	photorespiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010239	chloroplast mRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0010385	double-stranded methylated DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0010449	root meristem growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0010452	histone H3-K36 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0014072	response to isoquinoline alkaloid	IEP	Predict GO terms from Neighborhoods
CC	GO:0016581	NuRD complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016594	glycine binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0016597	amino acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016841	ammonia-lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016854	racemase and epimerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	IEP	Predict GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016881	acid-amino acid ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0018114	threonine racemase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018249	protein dehydration	IEP	Predict GO terms from Neighborhoods
BP	GO:0019478	D-amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019904	protein domain specific binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0021895	cerebral cortex neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0021953	central nervous system neuron differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0030165	PDZ domain binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030336	negative regulation of cell migration	IEP	Predict GO terms from Neighborhoods
MF	GO:0030378	serine racemase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0030848	threo-3-hydroxyaspartate ammonia-lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031048	small non-coding RNA-dependent heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032642	regulation of chemokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032722	positive regulation of chemokine production	IEP	Predict GO terms from Neighborhoods
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034310	primary alcohol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034770	histone H4-K20 methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0035064	methylated histone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0035266	meristem growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0036088	D-serine catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0036361	racemase activity, acting on amino acids and derivatives	IEP	Predict GO terms from Neighborhoods
BP	GO:0040013	negative regulation of locomotion	IEP	Predict GO terms from Neighborhoods
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042644	chloroplast nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042646	plastid nucleoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0042793	plastid transcription	IEP	Predict GO terms from Neighborhoods
MF	GO:0042799	histone methyltransferase activity (H4-K20 specific)	IEP	Predict GO terms from Neighborhoods
MF	GO:0042826	histone deacetylase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042866	pyruvate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043278	response to morphine	IEP	Predict GO terms from Neighborhoods
BP	GO:0043279	response to alkaloid	IEP	Predict GO terms from Neighborhoods
BP	GO:0043383	negative T cell selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0043966	histone H3 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043967	histone H4 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043971	histone H3-K18 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043972	histone H3-K23 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044030	regulation of DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044154	histone H3-K14 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045058	T cell selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0045060	negative thymic T cell selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0045061	thymic T cell selection	IEP	Predict GO terms from Neighborhoods
CC	GO:0045177	apical part of cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0045191	regulation of isotype switching	IEP	Predict GO terms from Neighborhoods
BP	GO:0045292	mRNA cis splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0045830	positive regulation of isotype switching	IEP	Predict GO terms from Neighborhoods
BP	GO:0045911	positive regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0046164	alcohol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046185	aldehyde catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046296	glycolate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046416	D-amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046437	D-amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046487	glyoxylate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046900	tetrahydrofolylpolyglutamate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046901	tetrahydrofolylpolyglutamate biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0047661	amino-acid racemase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048296	regulation of isotype switching to IgA isotypes	IEP	Predict GO terms from Neighborhoods
BP	GO:0048298	positive regulation of isotype switching to IgA isotypes	IEP	Predict GO terms from Neighborhoods
BP	GO:0048564	photosystem I assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0050864	regulation of B cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050867	positive regulation of cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050871	positive regulation of B cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051249	regulation of lymphocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051251	positive regulation of lymphocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060348	bone development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060411	cardiac septum morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060413	atrial septum morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0061628	H3K27me3 modified histone binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070178	D-serine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070179	D-serine biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0070577	lysine-acetylated histone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0071675	regulation of mononuclear cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090351	seedling development	IEP	Predict GO terms from Neighborhoods
CC	GO:0090545	CHD-type complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0097536	thymus epithelium morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0140033	acetylation-dependent protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0140034	methylation-dependent protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0140718	facultative heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901796	regulation of signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:1901798	positive regulation of signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:1904961	quiescent center organization	IEP	Predict GO terms from Neighborhoods
BP	GO:2000146	negative regulation of cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:2000401	regulation of lymphocyte migration	IEP	Predict GO terms from Neighborhoods
BP	GO:2000404	regulation of T cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:2000410	regulation of thymocyte migration	IEP	Predict GO terms from Neighborhoods
BP	GO:2000779	regulation of double-strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:2001032	regulation of double-strand break repair via nonhomologous end joining	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	240	267
IPR002885	Pentatricopeptide_repeat	472	501
IPR002885	Pentatricopeptide_repeat	545	566
IPR002885	Pentatricopeptide_repeat	647	670
IPR002885	Pentatricopeptide_repeat	270	300
IPR002885	Pentatricopeptide_repeat	343	362
IPR002885	Pentatricopeptide_repeat	371	398
IPR002885	Pentatricopeptide_repeat	444	466
IPR002885	Pentatricopeptide_repeat	571	615
IPR002885	Pentatricopeptide_repeat	67	113
IPR002885	Pentatricopeptide_repeat	167	217
IPR002885	Pentatricopeptide_repeat	673	719
IPR011990	TPR-like_helical_dom_sf	56	177
IPR002885	Pentatricopeptide_repeat	170	196
IPR002885	Pentatricopeptide_repeat	69	102
IPR002885	Pentatricopeptide_repeat	574	608
IPR002885	Pentatricopeptide_repeat	647	671
IPR002885	Pentatricopeptide_repeat	675	708
IPR002885	Pentatricopeptide_repeat	472	505

External Links

No external refs found!

SOLTUB.AGRIA.G00000014180

Expression Profile

Co-expression Networks

Functional Annotation