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  5. SOLTUB.AGRIA.G00000014244

SOLTUB.AGRIA.G00000014244


Description : Pentatricopeptide repeat-containing protein


Gene families : OG_02_0019400 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000014244
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_34


Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA AHRD
MF GO:0005488 binding IEA AHRD
BP GO:0008380 RNA splicing IEA AHRD
CC GO:0009507 chloroplast IEA AHRD
CC GO:0009532 plastid stroma IEA AHRD
BP GO:0009793 embryo development ending in seed dormancy IEA AHRD
BP GO:0010239 chloroplast mRNA processing IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0001822 kidney development IEP Predict GO terms from Neighborhoods
BP GO:0001947 heart looping IEP Predict GO terms from Neighborhoods
BP GO:0003143 embryonic heart tube morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0003146 heart jogging IEP Predict GO terms from Neighborhoods
BP GO:0003279 cardiac septum development IEP Predict GO terms from Neighborhoods
BP GO:0003283 atrial septum development IEP Predict GO terms from Neighborhoods
BP GO:0003341 cilium movement IEP Predict GO terms from Neighborhoods
BP GO:0003351 epithelial cilium movement involved in extracellular fluid movement IEP Predict GO terms from Neighborhoods
MF GO:0004176 ATP-dependent peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004222 metalloendopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004930 G protein-coupled receptor activity IEP Predict GO terms from Neighborhoods
MF GO:0005048 signal sequence binding IEP Predict GO terms from Neighborhoods
CC GO:0005741 mitochondrial outer membrane IEP Predict GO terms from Neighborhoods
CC GO:0005871 kinesin complex IEP Predict GO terms from Neighborhoods
CC GO:0005875 microtubule associated complex IEP Predict GO terms from Neighborhoods
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006208 pyrimidine nucleobase catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006212 uracil catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006605 protein targeting IEP Predict GO terms from Neighborhoods
BP GO:0006612 protein targeting to membrane IEP Predict GO terms from Neighborhoods
BP GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation IEP Predict GO terms from Neighborhoods
BP GO:0006654 phosphatidic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006805 xenobiotic metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006810 transport IEP Predict GO terms from Neighborhoods
BP GO:0006858 extracellular transport IEP Predict GO terms from Neighborhoods
BP GO:0006879 cellular iron ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0006886 intracellular protein transport IEP Predict GO terms from Neighborhoods
BP GO:0006996 organelle organization IEP Predict GO terms from Neighborhoods
BP GO:0007368 determination of left/right symmetry IEP Predict GO terms from Neighborhoods
BP GO:0007601 visual perception IEP Predict GO terms from Neighborhoods
BP GO:0008104 protein localization IEP Predict GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008320 protein transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0008649 rRNA methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0009112 nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009451 RNA modification IEP Predict GO terms from Neighborhoods
CC GO:0009526 plastid envelope IEP Predict GO terms from Neighborhoods
CC GO:0009527 plastid outer membrane IEP Predict GO terms from Neighborhoods
CC GO:0009535 chloroplast thylakoid membrane IEP Predict GO terms from Neighborhoods
CC GO:0009570 chloroplast stroma IEP Predict GO terms from Neighborhoods
BP GO:0009657 plastid organization IEP Predict GO terms from Neighborhoods
BP GO:0009658 chloroplast organization IEP Predict GO terms from Neighborhoods
BP GO:0009668 plastid membrane organization IEP Predict GO terms from Neighborhoods
CC GO:0009707 chloroplast outer membrane IEP Predict GO terms from Neighborhoods
BP GO:0009799 specification of symmetry IEP Predict GO terms from Neighborhoods
BP GO:0009855 determination of bilateral symmetry IEP Predict GO terms from Neighborhoods
CC GO:0009941 chloroplast envelope IEP Predict GO terms from Neighborhoods
BP GO:0010020 chloroplast fission IEP Predict GO terms from Neighborhoods
BP GO:0010027 thylakoid membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0010288 response to lead ion IEP Predict GO terms from Neighborhoods
BP GO:0010312 detoxification of zinc ion IEP Predict GO terms from Neighborhoods
BP GO:0010343 singlet oxygen-mediated programmed cell death IEP Predict GO terms from Neighborhoods
BP GO:0010380 regulation of chlorophyll biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0015031 protein transport IEP Predict GO terms from Neighborhoods
MF GO:0015232 heme transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0016021 integral component of membrane IEP Predict GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0016055 Wnt signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0016434 rRNA (cytosine) methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predict GO terms from Neighborhoods
MF GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds IEP Predict GO terms from Neighborhoods
MF GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances IEP Predict GO terms from Neighborhoods
BP GO:0017038 protein import IEP Predict GO terms from Neighborhoods
MF GO:0018771 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0018774 2,6-dioxo-6-phenylhexa-3-enoate hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0018962 3-phenylpropionate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019380 3-phenylpropionate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019740 nitrogen utilization IEP Predict GO terms from Neighborhoods
BP GO:0019860 uracil metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0019867 outer membrane IEP Predict GO terms from Neighborhoods
MF GO:0022884 macromolecule transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0030178 negative regulation of Wnt signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0030198 extracellular matrix organization IEP Predict GO terms from Neighborhoods
BP GO:0030324 lung development IEP Predict GO terms from Neighborhoods
CC GO:0031090 organelle membrane IEP Predict GO terms from Neighborhoods
BP GO:0031154 culmination involved in sorocarp development IEP Predict GO terms from Neighborhoods
BP GO:0031167 rRNA methylation IEP Predict GO terms from Neighborhoods
CC GO:0031224 intrinsic component of membrane IEP Predict GO terms from Neighborhoods
CC GO:0031312 extrinsic component of organelle membrane IEP Predict GO terms from Neighborhoods
CC GO:0031966 mitochondrial membrane IEP Predict GO terms from Neighborhoods
CC GO:0031968 organelle outer membrane IEP Predict GO terms from Neighborhoods
CC GO:0031969 chloroplast membrane IEP Predict GO terms from Neighborhoods
BP GO:0032092 positive regulation of protein binding IEP Predict GO terms from Neighborhoods
MF GO:0032977 membrane insertase activity IEP Predict GO terms from Neighborhoods
BP GO:0033036 macromolecule localization IEP Predict GO terms from Neighborhoods
CC GO:0033097 amyloplast membrane IEP Predict GO terms from Neighborhoods
BP GO:0033365 protein localization to organelle IEP Predict GO terms from Neighborhoods
CC GO:0034357 photosynthetic membrane IEP Predict GO terms from Neighborhoods
BP GO:0034755 iron ion transmembrane transport IEP Predict GO terms from Neighborhoods
CC GO:0035452 extrinsic component of plastid membrane IEP Predict GO terms from Neighborhoods
BP GO:0035469 determination of pancreatic left/right asymmetry IEP Predict GO terms from Neighborhoods
BP GO:0036473 cell death in response to oxidative stress IEP Predict GO terms from Neighborhoods
CC GO:0042170 plastid membrane IEP Predict GO terms from Neighborhoods
MF GO:0042171 lysophosphatidic acid acyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0042178 xenobiotic catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0042651 thylakoid membrane IEP Predict GO terms from Neighborhoods
MF GO:0042802 identical protein binding IEP Predict GO terms from Neighborhoods
MF GO:0043024 ribosomal small subunit binding IEP Predict GO terms from Neighborhoods
BP GO:0043062 extracellular structure organization IEP Predict GO terms from Neighborhoods
BP GO:0043393 regulation of protein binding IEP Predict GO terms from Neighborhoods
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043572 plastid fission IEP Predict GO terms from Neighborhoods
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predict GO terms from Neighborhoods
BP GO:0044782 cilium organization IEP Predict GO terms from Neighborhoods
BP GO:0045036 protein targeting to chloroplast IEP Predict GO terms from Neighborhoods
BP GO:0045037 protein import into chloroplast stroma IEP Predict GO terms from Neighborhoods
BP GO:0045038 protein import into chloroplast thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0045184 establishment of protein localization IEP Predict GO terms from Neighborhoods
BP GO:0045494 photoreceptor cell maintenance IEP Predict GO terms from Neighborhoods
BP GO:0046113 nucleobase catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046473 phosphatidic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046907 intracellular transport IEP Predict GO terms from Neighborhoods
MF GO:0047658 alpha-amino-acid esterase activity IEP Predict GO terms from Neighborhoods
BP GO:0048496 maintenance of animal organ identity IEP Predict GO terms from Neighborhoods
BP GO:0048793 pronephros development IEP Predict GO terms from Neighborhoods
BP GO:0050953 sensory perception of light stimulus IEP Predict GO terms from Neighborhoods
MF GO:0051087 chaperone binding IEP Predict GO terms from Neighborhoods
MF GO:0051117 ATPase binding IEP Predict GO terms from Neighborhoods
BP GO:0051176 positive regulation of sulfur metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051179 localization IEP Predict GO terms from Neighborhoods
BP GO:0051189 prosthetic group metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051205 protein insertion into membrane IEP Predict GO terms from Neighborhoods
BP GO:0051234 establishment of localization IEP Predict GO terms from Neighborhoods
BP GO:0051291 protein heterooligomerization IEP Predict GO terms from Neighborhoods
BP GO:0051649 establishment of localization in cell IEP Predict GO terms from Neighborhoods
MF GO:0052823 2-hydroxy-6-oxonona-2,4,7-trienedioate hydrolase activity IEP Predict GO terms from Neighborhoods
CC GO:0055035 plastid thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0055072 iron ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055085 transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0060026 convergent extension IEP Predict GO terms from Neighborhoods
BP GO:0060027 convergent extension involved in gastrulation IEP Predict GO terms from Neighborhoods
BP GO:0060271 cilium assembly IEP Predict GO terms from Neighborhoods
BP GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry IEP Predict GO terms from Neighborhoods
BP GO:0060562 epithelial tube morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0060972 left/right pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0060993 kidney morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0061024 membrane organization IEP Predict GO terms from Neighborhoods
CC GO:0061927 TOC-TIC supercomplex I IEP Predict GO terms from Neighborhoods
BP GO:0065002 intracellular protein transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0070121 Kupffer's vesicle development IEP Predict GO terms from Neighborhoods
BP GO:0070206 protein trimerization IEP Predict GO terms from Neighborhoods
BP GO:0070208 protein heterotrimerization IEP Predict GO terms from Neighborhoods
BP GO:0070453 regulation of heme biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0070455 positive regulation of heme biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0070475 rRNA base methylation IEP Predict GO terms from Neighborhoods
BP GO:0070727 cellular macromolecule localization IEP Predict GO terms from Neighborhoods
MF GO:0071424 rRNA (cytosine-N4-)-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0071617 lysophospholipid acyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0071705 nitrogen compound transport IEP Predict GO terms from Neighborhoods
BP GO:0071806 protein transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0071907 determination of digestive tract left/right asymmetry IEP Predict GO terms from Neighborhoods
BP GO:0071908 determination of intestine left/right asymmetry IEP Predict GO terms from Neighborhoods
BP GO:0071909 determination of stomach left/right asymmetry IEP Predict GO terms from Neighborhoods
BP GO:0071910 determination of liver left/right asymmetry IEP Predict GO terms from Neighborhoods
BP GO:0072189 ureter development IEP Predict GO terms from Neighborhoods
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0072529 pyrimidine-containing compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0072583 clathrin-dependent endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0072594 establishment of protein localization to organelle IEP Predict GO terms from Neighborhoods
BP GO:0072596 establishment of protein localization to chloroplast IEP Predict GO terms from Neighborhoods
BP GO:0072598 protein localization to chloroplast IEP Predict GO terms from Neighborhoods
BP GO:0090090 negative regulation of canonical Wnt signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0090175 regulation of establishment of planar polarity IEP Predict GO terms from Neighborhoods
BP GO:0090178 regulation of establishment of planar polarity involved in neural tube closure IEP Predict GO terms from Neighborhoods
BP GO:0090342 obsolete regulation of cell aging IEP Predict GO terms from Neighborhoods
BP GO:0090407 organophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0097468 programmed cell death in response to reactive oxygen species IEP Predict GO terms from Neighborhoods
CC GO:0097543 ciliary inversin compartment IEP Predict GO terms from Neighborhoods
CC GO:0097546 ciliary base IEP Predict GO terms from Neighborhoods
BP GO:0099111 microtubule-based transport IEP Predict GO terms from Neighborhoods
BP GO:0120031 plasma membrane bounded cell projection assembly IEP Predict GO terms from Neighborhoods
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predict GO terms from Neighborhoods
MF GO:0140104 molecular carrier activity IEP Predict GO terms from Neighborhoods
MF GO:0140318 protein transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0140466 iron-sulfur cluster export from the mitochondrion IEP Predict GO terms from Neighborhoods
MF GO:0140481 ABC-type iron-sulfur cluster transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0140597 protein carrier chaperone IEP Predict GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Predict GO terms from Neighborhoods
BP GO:1900871 chloroplast mRNA modification IEP Predict GO terms from Neighborhoods
BP GO:1901403 positive regulation of tetrapyrrole metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901465 positive regulation of tetrapyrrole biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901678 iron coordination entity transport IEP Predict GO terms from Neighborhoods
BP GO:1902497 iron-sulfur cluster transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1903008 organelle disassembly IEP Predict GO terms from Neighborhoods
BP GO:1903329 regulation of iron-sulfur cluster assembly IEP Predict GO terms from Neighborhoods
BP GO:1903331 positive regulation of iron-sulfur cluster assembly IEP Predict GO terms from Neighborhoods
BP GO:1903426 regulation of reactive oxygen species biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903427 negative regulation of reactive oxygen species biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1904821 chloroplast disassembly IEP Predict GO terms from Neighborhoods
BP GO:1905114 cell surface receptor signaling pathway involved in cell-cell signaling IEP Predict GO terms from Neighborhoods
BP GO:1905515 non-motile cilium assembly IEP Predict GO terms from Neighborhoods
BP GO:1990542 mitochondrial transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:2000027 regulation of animal organ morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:2000050 regulation of non-canonical Wnt signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2000095 regulation of Wnt signaling pathway, planar cell polarity pathway IEP Predict GO terms from Neighborhoods
BP GO:2000167 regulation of planar cell polarity pathway involved in neural tube closure IEP Predict GO terms from Neighborhoods
BP GO:2000378 negative regulation of reactive oxygen species metabolic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 160 189
IPR002885 Pentatricopeptide_repeat 583 611
IPR002885 Pentatricopeptide_repeat 457 485
IPR002885 Pentatricopeptide_repeat 744 797
IPR002885 Pentatricopeptide_repeat 391 453
IPR002885 Pentatricopeptide_repeat 251 308
IPR002885 Pentatricopeptide_repeat 333 381
IPR002885 Pentatricopeptide_repeat 191 238
IPR002885 Pentatricopeptide_repeat 509 557
IPR002885 Pentatricopeptide_repeat 613 660
IPR011990 TPR-like_helical_dom_sf 193 639
IPR002885 Pentatricopeptide_repeat 336 370
IPR002885 Pentatricopeptide_repeat 441 475
IPR002885 Pentatricopeptide_repeat 546 577
IPR002885 Pentatricopeptide_repeat 511 544
IPR002885 Pentatricopeptide_repeat 300 328
IPR002885 Pentatricopeptide_repeat 582 615
IPR002885 Pentatricopeptide_repeat 160 193
IPR002885 Pentatricopeptide_repeat 406 439
IPR002885 Pentatricopeptide_repeat 195 227
IPR002885 Pentatricopeptide_repeat 617 650
IPR002885 Pentatricopeptide_repeat 371 405
IPR002885 Pentatricopeptide_repeat 264 298
IPR002885 Pentatricopeptide_repeat 230 262
No external refs found!