SOLTUB.AGRIA.G00000015634


Description : RNA exonuclease 3


Gene families : OG_02_0008942 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000015634
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_72


Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
BP GO:0006364 rRNA processing IEA AHRD
BP GO:0010587 miRNA catabolic process IEA AHRD
BP GO:0010629 negative regulation of gene expression IEA AHRD
CC GO:0016592 mediator complex IEA AHRD
CC GO:0016604 nuclear body IEA AHRD
MF GO:0035198 miRNA binding IEA AHRD
BP GO:0043628 small regulatory ncRNA 3'-end processing IEA AHRD
MF GO:0044748 3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing IEA AHRD
BP GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP Predict GO terms from Neighborhoods
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
MF GO:0000900 mRNA regulatory element binding translation repressor activity IEP Predict GO terms from Neighborhoods
BP GO:0002069 columnar/cuboidal epithelial cell maturation IEP Predict GO terms from Neighborhoods
BP GO:0002070 epithelial cell maturation IEP Predict GO terms from Neighborhoods
BP GO:0002119 nematode larval development IEP Predict GO terms from Neighborhoods
BP GO:0002164 larval development IEP Predict GO terms from Neighborhoods
MF GO:0003684 damaged DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003725 double-stranded RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0004146 dihydrofolate reductase activity IEP Predict GO terms from Neighborhoods
MF GO:0004529 exodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004536 deoxyribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004799 thymidylate synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0004819 glutamine-tRNA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0004860 protein kinase inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0005048 signal sequence binding IEP Predict GO terms from Neighborhoods
MF GO:0005381 iron ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0005542 folic acid binding IEP Predict GO terms from Neighborhoods
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006231 dTMP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006235 dTTP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006259 DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006266 DNA ligation IEP Predict GO terms from Neighborhoods
BP GO:0006281 DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0006302 double-strand break repair IEP Predict GO terms from Neighborhoods
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predict GO terms from Neighborhoods
BP GO:0006417 regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predict GO terms from Neighborhoods
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Predict GO terms from Neighborhoods
BP GO:0006469 negative regulation of protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0006606 protein import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006607 NLS-bearing protein import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006730 one-carbon metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006760 folic acid-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006974 cellular response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:0007276 gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0007638 mechanosensory behavior IEP Predict GO terms from Neighborhoods
MF GO:0008139 nuclear localization sequence binding IEP Predict GO terms from Neighborhoods
MF GO:0008168 methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008409 5'-3' exonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0008967 phosphoglycolate phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0009112 nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009123 nucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009129 pyrimidine nucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009157 deoxyribonucleoside monophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009162 deoxyribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009176 pyrimidine deoxyribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009211 pyrimidine deoxyribonucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009212 pyrimidine deoxyribonucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009219 pyrimidine deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009256 10-formyltetrahydrofolate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009257 10-formyltetrahydrofolate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009265 2'-deoxyribonucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009616 RNAi-mediated antiviral immune response IEP Predict GO terms from Neighborhoods
BP GO:0009887 animal organ morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009954 proximal/distal pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010093 specification of floral organ identity IEP Predict GO terms from Neighborhoods
BP GO:0010165 response to X-ray IEP Predict GO terms from Neighborhoods
BP GO:0010212 response to ionizing radiation IEP Predict GO terms from Neighborhoods
BP GO:0010332 response to gamma radiation IEP Predict GO terms from Neighborhoods
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010589 leaf proximal/distal pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010608 post-transcriptional regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0016073 snRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016180 snRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predict GO terms from Neighborhoods
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predict GO terms from Neighborhoods
MF GO:0016819 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides IEP Predict GO terms from Neighborhoods
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predict GO terms from Neighborhoods
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Predict GO terms from Neighborhoods
CC GO:0017101 aminoacyl-tRNA synthetase multienzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0017148 negative regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0019048 modulation by virus of host process IEP Predict GO terms from Neighborhoods
MF GO:0019210 kinase inhibitor activity IEP Predict GO terms from Neighborhoods
BP GO:0019692 deoxyribose phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019860 uracil metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0022008 neurogenesis IEP Predict GO terms from Neighborhoods
BP GO:0030030 cell projection organization IEP Predict GO terms from Neighborhoods
MF GO:0030371 translation repressor activity IEP Predict GO terms from Neighborhoods
BP GO:0030866 cortical actin cytoskeleton organization IEP Predict GO terms from Neighborhoods
MF GO:0030983 mismatched DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0031100 animal organ regeneration IEP Predict GO terms from Neighborhoods
CC GO:0031209 SCAR complex IEP Predict GO terms from Neighborhoods
CC GO:0031252 cell leading edge IEP Predict GO terms from Neighborhoods
BP GO:0031323 regulation of cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031426 polycistronic mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0031960 response to corticosteroid IEP Predict GO terms from Neighborhoods
CC GO:0032039 integrator complex IEP Predict GO terms from Neighborhoods
BP GO:0032268 regulation of cellular protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032502 developmental process IEP Predict GO terms from Neighborhoods
BP GO:0032570 response to progesterone IEP Predict GO terms from Neighborhoods
BP GO:0032873 negative regulation of stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0033189 response to vitamin A IEP Predict GO terms from Neighborhoods
MF GO:0033218 amide binding IEP Predict GO terms from Neighborhoods
BP GO:0033273 response to vitamin IEP Predict GO terms from Neighborhoods
BP GO:0033673 negative regulation of kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0033699 DNA 5'-adenosine monophosphate hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0034248 regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034472 snRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0035195 miRNA-mediated gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0035196 miRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0035279 miRNA-mediated gene silencing by mRNA destabilization IEP Predict GO terms from Neighborhoods
MF GO:0035312 5'-3' exodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0035821 modulation of process of another organism IEP Predict GO terms from Neighborhoods
BP GO:0035999 tetrahydrofolate interconversion IEP Predict GO terms from Neighborhoods
MF GO:0042083 5,10-methylenetetrahydrofolate-dependent methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0042162 telomeric DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042558 pteridine-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043038 amino acid activation IEP Predict GO terms from Neighborhoods
BP GO:0043039 tRNA aminoacylation IEP Predict GO terms from Neighborhoods
CC GO:0043564 Ku70:Ku80 complex IEP Predict GO terms from Neighborhoods
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0044003 modulation by symbiont of host process IEP Predict GO terms from Neighborhoods
BP GO:0045010 actin nucleation IEP Predict GO terms from Neighborhoods
BP GO:0046073 dTMP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046075 dTTP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046385 deoxyribose phosphate biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0046403 polynucleotide 3'-phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0046653 tetrahydrofolate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0047485 protein N-terminus binding IEP Predict GO terms from Neighborhoods
MF GO:0047627 adenylylsulfatase activity IEP Predict GO terms from Neighborhoods
BP GO:0048468 cell development IEP Predict GO terms from Neighborhoods
BP GO:0048477 oogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048513 animal organ development IEP Predict GO terms from Neighborhoods
BP GO:0048568 embryonic organ development IEP Predict GO terms from Neighborhoods
BP GO:0048644 muscle organ morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048699 generation of neurons IEP Predict GO terms from Neighborhoods
BP GO:0048813 dendrite morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048821 erythrocyte development IEP Predict GO terms from Neighborhoods
BP GO:0048856 anatomical structure development IEP Predict GO terms from Neighborhoods
BP GO:0048869 cellular developmental process IEP Predict GO terms from Neighborhoods
BP GO:0050779 RNA destabilization IEP Predict GO terms from Neighborhoods
BP GO:0050794 regulation of cellular process IEP Predict GO terms from Neighborhoods
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051216 cartilage development IEP Predict GO terms from Neighborhoods
MF GO:0051219 phosphoprotein binding IEP Predict GO terms from Neighborhoods
BP GO:0051248 negative regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051384 response to glucocorticoid IEP Predict GO terms from Neighborhoods
BP GO:0051593 response to folic acid IEP Predict GO terms from Neighborhoods
BP GO:0060574 intestinal epithelial cell maturation IEP Predict GO terms from Neighborhoods
BP GO:0061157 mRNA destabilization IEP Predict GO terms from Neighborhoods
BP GO:0061515 myeloid cell development IEP Predict GO terms from Neighborhoods
MF GO:0061608 nuclear import signal receptor activity IEP Predict GO terms from Neighborhoods
BP GO:0061715 obsolete miRNA 2'-O-methylation IEP Predict GO terms from Neighborhoods
BP GO:0070303 negative regulation of stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
CC GO:0071005 U2-type precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071011 precatalytic spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071478 cellular response to radiation IEP Predict GO terms from Neighborhoods
BP GO:0071479 cellular response to ionizing radiation IEP Predict GO terms from Neighborhoods
BP GO:0071480 cellular response to gamma radiation IEP Predict GO terms from Neighborhoods
BP GO:0071481 cellular response to X-ray IEP Predict GO terms from Neighborhoods
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0080090 regulation of primary metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090701 specification of plant organ identity IEP Predict GO terms from Neighborhoods
BP GO:0097421 liver regeneration IEP Predict GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Predict GO terms from Neighborhoods
MF GO:0140104 molecular carrier activity IEP Predict GO terms from Neighborhoods
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predict GO terms from Neighborhoods
BP GO:0140547 acquisition of seed longevity IEP Predict GO terms from Neighborhoods
BP GO:1903311 regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:1990165 single-strand break-containing DNA binding IEP Predict GO terms from Neighborhoods
MF GO:1990825 sequence-specific mRNA binding IEP Predict GO terms from Neighborhoods
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR012337 RNaseH-like_sf 215 367
IPR013520 Exonuclease_RNaseT/DNA_pol3 217 362
No external refs found!