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  5. SOLTUB.AGRIA.G00000016802

SOLTUB.AGRIA.G00000016802


Description : Replication protein A 70 kDa DNA-binding subunit


Gene families : OG_02_0000001 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000016802
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_251

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000001647 No alias Replication protein A 70 kDa DNA-binding subunit B 0.03 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000010685 No alias Replication protein A 70 kDa DNA-binding subunit B 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000001647 No alias Replication protein A 70 kDa DNA-binding subunit B 0.03 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000010685 No alias Replication protein A 70 kDa DNA-binding subunit B 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000001647 No alias Replication protein A 70 kDa DNA-binding subunit B 0.03 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000010685 No alias Replication protein A 70 kDa DNA-binding subunit B 0.06 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003941 L-serine ammonia-lyase activity IEP Predict GO terms from Neighborhoods
BP GO:0006563 L-serine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006565 L-serine catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008721 D-serine ammonia-lyase activity IEP Predict GO terms from Neighborhoods
BP GO:0009069 serine family amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009070 serine family amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009071 serine family amino acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009436 glyoxylate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009441 glycolate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010565 regulation of cellular ketone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0014072 response to isoquinoline alkaloid IEP Predict GO terms from Neighborhoods
CC GO:0016592 mediator complex IEP Predict GO terms from Neighborhoods
MF GO:0016594 glycine binding IEP Predict GO terms from Neighborhoods
MF GO:0016597 amino acid binding IEP Predict GO terms from Neighborhoods
MF GO:0016840 carbon-nitrogen lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016841 ammonia-lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016854 racemase and epimerase activity IEP Predict GO terms from Neighborhoods
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predict GO terms from Neighborhoods
MF GO:0018114 threonine racemase activity IEP Predict GO terms from Neighborhoods
BP GO:0018249 protein dehydration IEP Predict GO terms from Neighborhoods
BP GO:0019216 regulation of lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019217 regulation of fatty acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019478 D-amino acid catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0030165 PDZ domain binding IEP Predict GO terms from Neighborhoods
MF GO:0030378 serine racemase activity IEP Predict GO terms from Neighborhoods
MF GO:0030848 threo-3-hydroxyaspartate ammonia-lyase activity IEP Predict GO terms from Neighborhoods
BP GO:0034308 primary alcohol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034310 primary alcohol catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0036088 D-serine catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predict GO terms from Neighborhoods
BP GO:0042219 cellular modified amino acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042304 regulation of fatty acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042866 pyruvate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043278 response to morphine IEP Predict GO terms from Neighborhoods
BP GO:0043279 response to alkaloid IEP Predict GO terms from Neighborhoods
CC GO:0044666 MLL3/4 complex IEP Predict GO terms from Neighborhoods
CC GO:0045177 apical part of cell IEP Predict GO terms from Neighborhoods
BP GO:0045717 negative regulation of fatty acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045723 positive regulation of fatty acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045833 negative regulation of lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045922 negative regulation of fatty acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046164 alcohol catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046185 aldehyde catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046296 glycolate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046416 D-amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046437 D-amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046487 glyoxylate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046890 regulation of lipid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0047661 amino-acid racemase activity IEP Predict GO terms from Neighborhoods
BP GO:0051055 negative regulation of lipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0051568 histone H3-K4 methylation IEP Predict GO terms from Neighborhoods
BP GO:0060290 transdifferentiation IEP Predict GO terms from Neighborhoods
BP GO:0062014 negative regulation of small molecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0070178 D-serine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0070179 D-serine biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR012340 NA-bd_OB-fold 5 111
IPR012340 NA-bd_OB-fold 124 250
IPR013955 Rep_factor-A_C 308 420
IPR012340 NA-bd_OB-fold 294 406
No external refs found!