SOLTUB.AGRIA.G00000017000


Description : Pentatricopeptide repeat-containing protein, putative


Gene families : OG_02_0006006 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000017000
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_261


Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
BP GO:0006979 response to oxidative stress IEA AHRD
BP GO:0009651 response to salt stress IEA AHRD
BP GO:0009737 response to abscisic acid IEA AHRD
BP GO:0042775 mitochondrial ATP synthesis coupled electron transport IEA AHRD
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predict GO terms from Neighborhoods
CC GO:0000418 RNA polymerase IV complex IEP Predict GO terms from Neighborhoods
CC GO:0000419 RNA polymerase V complex IEP Predict GO terms from Neighborhoods
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
CC GO:0000792 heterochromatin IEP Predict GO terms from Neighborhoods
MF GO:0001054 RNA polymerase I activity IEP Predict GO terms from Neighborhoods
MF GO:0001056 RNA polymerase III activity IEP Predict GO terms from Neighborhoods
BP GO:0001522 pseudouridine synthesis IEP Predict GO terms from Neighborhoods
BP GO:0001676 long-chain fatty acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0001819 positive regulation of cytokine production IEP Predict GO terms from Neighborhoods
MF GO:0001882 nucleoside binding IEP Predict GO terms from Neighborhoods
MF GO:0002153 steroid receptor RNA activator RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0002791 regulation of peptide secretion IEP Predict GO terms from Neighborhoods
BP GO:0002793 positive regulation of peptide secretion IEP Predict GO terms from Neighborhoods
MF GO:0003724 RNA helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
MF GO:0004467 long-chain fatty acid-CoA ligase activity IEP Predict GO terms from Neighborhoods
CC GO:0005665 RNA polymerase II, core complex IEP Predict GO terms from Neighborhoods
CC GO:0005666 RNA polymerase III complex IEP Predict GO terms from Neighborhoods
CC GO:0005736 RNA polymerase I complex IEP Predict GO terms from Neighborhoods
CC GO:0005741 mitochondrial outer membrane IEP Predict GO terms from Neighborhoods
CC GO:0005811 lipid droplet IEP Predict GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006259 DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006304 DNA modification IEP Predict GO terms from Neighborhoods
BP GO:0006305 DNA alkylation IEP Predict GO terms from Neighborhoods
BP GO:0006306 DNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0006351 DNA-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:0006360 transcription by RNA polymerase I IEP Predict GO terms from Neighborhoods
BP GO:0006383 transcription by RNA polymerase III IEP Predict GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006638 neutral lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006639 acylglycerol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006641 triglyceride metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008186 ATP-dependent activity, acting on RNA IEP Predict GO terms from Neighborhoods
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009304 tRNA transcription IEP Predict GO terms from Neighborhoods
MF GO:0009982 pseudouridine synthase activity IEP Predict GO terms from Neighborhoods
CC GO:0010005 cortical microtubule, transverse to long axis IEP Predict GO terms from Neighborhoods
BP GO:0010031 circumnutation IEP Predict GO terms from Neighborhoods
BP GO:0015074 DNA integration IEP Predict GO terms from Neighborhoods
MF GO:0015645 fatty acid ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0015908 fatty acid transport IEP Predict GO terms from Neighborhoods
BP GO:0015909 long-chain fatty acid transport IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016073 snRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016405 CoA-ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016866 intramolecular transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predict GO terms from Neighborhoods
MF GO:0016878 acid-thiol ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0018130 heterocycle biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019432 triglyceride biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019438 aromatic compound biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0030374 nuclear receptor coactivator activity IEP Predict GO terms from Neighborhoods
BP GO:0030422 siRNA processing IEP Predict GO terms from Neighborhoods
CC GO:0030880 RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0031119 tRNA pseudouridine synthesis IEP Predict GO terms from Neighborhoods
BP GO:0031120 snRNA pseudouridine synthesis IEP Predict GO terms from Neighborhoods
BP GO:0032024 positive regulation of insulin secretion IEP Predict GO terms from Neighborhoods
BP GO:0032196 transposition IEP Predict GO terms from Neighborhoods
BP GO:0032479 regulation of type I interferon production IEP Predict GO terms from Neighborhoods
BP GO:0032481 positive regulation of type I interferon production IEP Predict GO terms from Neighborhoods
MF GO:0032549 ribonucleoside binding IEP Predict GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0033677 DNA/RNA helicase activity IEP Predict GO terms from Neighborhoods
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
BP GO:0034377 plasma lipoprotein particle assembly IEP Predict GO terms from Neighborhoods
BP GO:0034379 very-low-density lipoprotein particle assembly IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035336 long-chain fatty-acyl-CoA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035337 fatty-acyl-CoA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035338 long-chain fatty-acyl-CoA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0035384 thioester biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0040031 snRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0042797 tRNA transcription by RNA polymerase III IEP Predict GO terms from Neighborhoods
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0044539 long-chain fatty acid import into cell IEP Predict GO terms from Neighborhoods
BP GO:0044728 DNA methylation or demethylation IEP Predict GO terms from Neighborhoods
BP GO:0046460 neutral lipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046463 acylglycerol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046883 regulation of hormone secretion IEP Predict GO terms from Neighborhoods
BP GO:0046887 positive regulation of hormone secretion IEP Predict GO terms from Neighborhoods
BP GO:0046949 fatty-acyl-CoA biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0047676 arachidonate-CoA ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0050708 regulation of protein secretion IEP Predict GO terms from Neighborhoods
BP GO:0050714 positive regulation of protein secretion IEP Predict GO terms from Neighborhoods
BP GO:0050796 regulation of insulin secretion IEP Predict GO terms from Neighborhoods
BP GO:0050879 multicellular organismal movement IEP Predict GO terms from Neighborhoods
BP GO:0051047 positive regulation of secretion IEP Predict GO terms from Neighborhoods
CC GO:0055028 cortical microtubule IEP Predict GO terms from Neighborhoods
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0060996 dendritic spine development IEP Predict GO terms from Neighborhoods
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predict GO terms from Neighborhoods
BP GO:0062028 regulation of stress granule assembly IEP Predict GO terms from Neighborhoods
BP GO:0062029 positive regulation of stress granule assembly IEP Predict GO terms from Neighborhoods
BP GO:0065005 protein-lipid complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0070672 response to interleukin-15 IEP Predict GO terms from Neighborhoods
BP GO:0070893 transposon integration IEP Predict GO terms from Neighborhoods
BP GO:0071616 acyl-CoA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0071825 protein-lipid complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0071827 plasma lipoprotein particle organization IEP Predict GO terms from Neighborhoods
BP GO:0090087 regulation of peptide transport IEP Predict GO terms from Neighborhoods
BP GO:0090276 regulation of peptide hormone secretion IEP Predict GO terms from Neighborhoods
BP GO:0090277 positive regulation of peptide hormone secretion IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0090433 palmitoyl-CoA ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0097659 nucleic acid-templated transcription IEP Predict GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Predict GO terms from Neighborhoods
BP GO:0098781 ncRNA transcription IEP Predict GO terms from Neighborhoods
CC GO:0099080 supramolecular complex IEP Predict GO terms from Neighborhoods
MF GO:0106029 tRNA pseudouridine synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0106032 snRNA pseudouridine synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Predict GO terms from Neighborhoods
BP GO:0140354 lipid import into cell IEP Predict GO terms from Neighborhoods
CC GO:0140535 intracellular protein-containing complex IEP Predict GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Predict GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Predict GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901570 fatty acid derivative biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902115 regulation of organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:1902117 positive regulation of organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:1903532 positive regulation of secretion by cell IEP Predict GO terms from Neighborhoods
CC GO:1990234 transferase complex IEP Predict GO terms from Neighborhoods
BP GO:1990481 mRNA pseudouridine synthesis IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 492 538
IPR011990 TPR-like_helical_dom_sf 349 558
IPR002885 Pentatricopeptide_repeat 495 529
No external refs found!