SOLTUB.AGRIA.G00000017609

Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein

Gene families : OG_02_0014760 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000017609
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_146

Type	GO Term	Name	Evidence	Source
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
BP	GO:0003006	developmental process involved in reproduction	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005543	phospholipid binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
CC	GO:0005856	cytoskeleton	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	IEA	AHRD
BP	GO:0006996	organelle organization	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008289	lipid binding	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	IEA	AHRD
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
CC	GO:0016020	membrane	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	AHRD
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0022008	neurogenesis	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030695	GTPase regulator activity	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	IEA	AHRD
BP	GO:0031347	regulation of defense response	None	Extended
CC	GO:0031974	membrane-enclosed lumen	None	Extended
CC	GO:0031981	nuclear lumen	IEA	AHRD
BP	GO:0032020	ISG15-protein conjugation	IEA	AHRD
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
MF	GO:0035091	phosphatidylinositol binding	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0042296	ISG15 transferase activity	IEA	AHRD
MF	GO:0042802	identical protein binding	IEA	AHRD
CC	GO:0042995	cell projection	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0043233	organelle lumen	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048699	generation of neurons	IEA	AHRD
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050688	regulation of defense response to virus	IEA	AHRD
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	IEA	AHRD
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
MF	GO:0060589	nucleoside-triphosphatase regulator activity	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	IEA	AHRD
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
CC	GO:0070013	intracellular organelle lumen	None	Extended
MF	GO:0070300	phosphatidic acid binding	IEA	AHRD
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	IEA	AHRD
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000032	cell wall mannoprotein biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000578	embryonic axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0000725	recombinational repair	IEP	Predict GO terms from Neighborhoods
MF	GO:0004475	mannose-1-phosphate guanylyltransferase (GTP) activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005811	lipid droplet	IEP	Predict GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005976	polysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005996	monosaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006004	fucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006013	mannose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006056	mannoprotein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006057	mannoprotein biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006275	regulation of DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006302	double-strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006334	nucleosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0006337	nucleosome disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0006486	protein glycosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006766	vitamin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007155	cell adhesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0008156	negative regulation of DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009100	glycoprotein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009101	glycoprotein biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009110	vitamin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009298	GDP-mannose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009638	phototropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009785	blue light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009798	axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009835	fruit ripening	IEP	Predict GO terms from Neighborhoods
BP	GO:0009836	fruit ripening, climacteric	IEP	Predict GO terms from Neighborhoods
BP	GO:0009838	abscission	IEP	Predict GO terms from Neighborhoods
BP	GO:0009880	embryonic pattern specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009900	dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0009911	positive regulation of flower development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009942	longitudinal axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010047	fruit dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0010193	response to ozone	IEP	Predict GO terms from Neighborhoods
BP	GO:0010227	floral organ abscission	IEP	Predict GO terms from Neighborhoods
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010395	rhamnogalacturonan I metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016444	somatic cell DNA recombination	IEP	Predict GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019318	hexose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019673	GDP-mannose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019852	L-ascorbic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019853	L-ascorbic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030243	cellulose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030244	cellulose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030308	negative regulation of cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0030522	intracellular receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0030855	epithelial cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031506	cell wall glycoprotein biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032984	protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0032986	protein-DNA complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034764	positive regulation of transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034767	positive regulation of ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0042221	response to chemical	IEP	Predict GO terms from Neighborhoods
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043266	regulation of potassium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043268	positive regulation of potassium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043270	positive regulation of ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043413	macromolecule glycosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045446	endothelial cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045489	pectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046364	monosaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048481	plant ovule development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048507	meristem development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051273	beta-glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052325	cell wall pectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052546	cell wall pectin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0060359	response to ammonium ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0065004	protein-DNA complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0070085	glycosylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0070568	guanylyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071483	cellular response to blue light	IEP	Predict GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1901334	lactone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901336	lactone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901379	regulation of potassium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1901381	positive regulation of potassium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903286	regulation of potassium ion import	IEP	Predict GO terms from Neighborhoods
BP	GO:1903288	positive regulation of potassium ion import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1904062	regulation of cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904064	positive regulation of cation transmembrane transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR027988	BRX_N	889	915
IPR011011	Znf_FYVE_PHD	634	706
IPR000408	Reg_chr_condens	476	525
IPR000408	Reg_chr_condens	305	353
IPR000408	Reg_chr_condens	412	460
IPR000408	Reg_chr_condens	529	577
IPR000408	Reg_chr_condens	356	408
IPR000408	Reg_chr_condens	582	629
IPR000306	Znf_FYVE	633	699
IPR013591	Brevis_radix_dom	970	1024
IPR009091	RCC1/BLIP-II	241	634

External Links

No external refs found!

SOLTUB.AGRIA.G00000017609

Expression Profile

Co-expression Networks

Functional Annotation