Coexpression cluster: Cluster_146 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0017096 acetylserotonin O-methyltransferase activity 7.63% (9/118) 6.96 0.0 0.0
GO:0030187 melatonin biosynthetic process 7.63% (9/118) 6.79 0.0 0.0
GO:0030186 melatonin metabolic process 7.63% (9/118) 6.68 0.0 0.0
GO:0008171 O-methyltransferase activity 8.47% (10/118) 4.5 0.0 0.0
GO:1901362 organic cyclic compound biosynthetic process 27.12% (32/118) 1.93 0.0 0.0
GO:0044249 cellular biosynthetic process 37.29% (44/118) 1.41 0.0 0.0
GO:0042430 indole-containing compound metabolic process 10.17% (12/118) 3.49 0.0 0.0
GO:0003674 molecular_function 85.59% (101/118) 0.52 0.0 0.0
GO:0009058 biosynthetic process 38.98% (46/118) 1.31 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 22.88% (27/118) 1.97 0.0 0.0
GO:0110165 cellular anatomical entity 85.59% (101/118) 0.51 0.0 0.0
GO:1901576 organic substance biosynthetic process 37.29% (44/118) 1.33 0.0 0.0
GO:0008150 biological_process 86.44% (102/118) 0.49 0.0 0.0
GO:0005575 cellular_component 85.59% (101/118) 0.49 0.0 1e-06
GO:0019748 secondary metabolic process 19.49% (23/118) 2.0 0.0 1e-06
GO:0044550 secondary metabolite biosynthetic process 16.1% (19/118) 2.15 0.0 6e-06
GO:0042435 indole-containing compound biosynthetic process 7.63% (9/118) 3.54 0.0 1e-05
GO:0008152 metabolic process 63.56% (75/118) 0.68 0.0 1.5e-05
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 8.47% (10/118) 3.15 0.0 2.1e-05
GO:0003824 catalytic activity 55.93% (66/118) 0.76 0.0 2.2e-05
GO:0009698 phenylpropanoid metabolic process 13.56% (16/118) 2.26 0.0 2.3e-05
GO:0009820 alkaloid metabolic process 10.17% (12/118) 2.73 0.0 2.5e-05
GO:0008168 methyltransferase activity 9.32% (11/118) 2.9 0.0 2.5e-05
GO:0018958 phenol-containing compound metabolic process 7.63% (9/118) 3.3 0.0 2.9e-05
GO:0034754 cellular hormone metabolic process 8.47% (10/118) 3.04 0.0 3.1e-05
GO:0016741 transferase activity, transferring one-carbon groups 9.32% (11/118) 2.85 0.0 3.1e-05
GO:0009987 cellular process 74.58% (88/118) 0.51 1e-06 3.5e-05
GO:0035265 organ growth 3.39% (4/118) 5.85 1e-06 4.4e-05
GO:0042446 hormone biosynthetic process 7.63% (9/118) 3.19 1e-06 4.4e-05
GO:0042445 hormone metabolic process 10.17% (12/118) 2.62 1e-06 4.5e-05
GO:0009699 phenylpropanoid biosynthetic process 11.86% (14/118) 2.28 1e-06 7.3e-05
GO:0018130 heterocycle biosynthetic process 16.1% (19/118) 1.83 2e-06 9e-05
GO:0071704 organic substance metabolic process 58.47% (69/118) 0.66 2e-06 0.0001
GO:0010817 regulation of hormone levels 14.41% (17/118) 1.94 2e-06 0.000112
GO:0030766 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity 3.39% (4/118) 5.33 3e-06 0.000163
GO:0005737 cytoplasm 22.88% (27/118) 1.28 1.1e-05 0.000559
GO:0016098 monoterpenoid metabolic process 5.08% (6/118) 3.52 1.5e-05 0.00075
GO:0016099 monoterpenoid biosynthetic process 5.08% (6/118) 3.52 1.5e-05 0.00075
GO:0065007 biological regulation 55.93% (66/118) 0.61 1.6e-05 0.00078
GO:0046983 protein dimerization activity 13.56% (16/118) 1.75 2.2e-05 0.001063
GO:0044237 cellular metabolic process 52.54% (62/118) 0.63 2.3e-05 0.001074
GO:0009812 flavonoid metabolic process 7.63% (9/118) 2.51 3.2e-05 0.001444
GO:0043604 amide biosynthetic process 8.47% (10/118) 2.33 3.4e-05 0.00149
GO:1901564 organonitrogen compound metabolic process 38.14% (45/118) 0.81 4e-05 0.00171
GO:1901360 organic cyclic compound metabolic process 31.36% (37/118) 0.93 5e-05 0.002097
GO:0034973 Sid2-Mob1 complex 1.69% (2/118) 7.37 5.4e-05 0.002129
GO:0009697 salicylic acid biosynthetic process 2.54% (3/118) 5.37 5.2e-05 0.002131
GO:0050896 response to stimulus 56.78% (67/118) 0.55 5.3e-05 0.002147
GO:0005488 binding 67.8% (80/118) 0.44 7.1e-05 0.002758
GO:0045229 external encapsulating structure organization 11.86% (14/118) 1.75 7.4e-05 0.002802
GO:0106240 labd-13Z-ene-9,15,16-triol synthase activity 3.39% (4/118) 4.16 7.7e-05 0.002861
GO:0046189 phenol-containing compound biosynthetic process 4.24% (5/118) 3.49 8.7e-05 0.003061
GO:0042743 hydrogen peroxide metabolic process 4.24% (5/118) 3.5 8.5e-05 0.003078
GO:0009821 alkaloid biosynthetic process 5.93% (7/118) 2.76 8.6e-05 0.003083
GO:0042802 identical protein binding 18.64% (22/118) 1.28 9e-05 0.003092
GO:0102811 geraniol 10-hydroxylase activity 2.54% (3/118) 5.1 9.3e-05 0.003126
GO:0009653 anatomical structure morphogenesis 20.34% (24/118) 1.19 0.000101 0.00328
GO:0045730 respiratory burst 3.39% (4/118) 4.07 0.0001 0.003304
GO:1901944 miltiradiene metabolic process 3.39% (4/118) 4.03 0.00011 0.00346
GO:1901946 miltiradiene biosynthetic process 3.39% (4/118) 4.03 0.00011 0.00346
GO:0030761 8-hydroxyquercitin 8-O-methyltransferase activity 2.54% (3/118) 5.0 0.000113 0.003515
GO:0009664 plant-type cell wall organization 6.78% (8/118) 2.42 0.000137 0.004192
GO:0071554 cell wall organization or biogenesis 11.86% (14/118) 1.65 0.00015 0.004498
GO:0071669 plant-type cell wall organization or biogenesis 8.47% (10/118) 2.03 0.000184 0.005431
GO:0045488 pectin metabolic process 5.93% (7/118) 2.56 0.000203 0.005895
GO:1901615 organic hydroxy compound metabolic process 10.17% (12/118) 1.78 0.000211 0.006056
GO:0010393 galacturonan metabolic process 5.93% (7/118) 2.53 0.000225 0.006365
GO:0002832 negative regulation of response to biotic stimulus 5.93% (7/118) 2.52 0.000239 0.006563
GO:0020037 heme binding 5.93% (7/118) 2.51 0.000243 0.006567
GO:0032350 regulation of hormone metabolic process 4.24% (5/118) 3.19 0.000237 0.006591
GO:0010089 xylem development 5.08% (6/118) 2.75 0.00029 0.00774
GO:0043207 response to external biotic stimulus 28.81% (34/118) 0.85 0.000331 0.008691
GO:0042744 hydrogen peroxide catabolic process 3.39% (4/118) 3.59 0.000356 0.009226
GO:0009505 plant-type cell wall 8.47% (10/118) 1.89 0.00039 0.009969
GO:0032102 negative regulation of response to external stimulus 5.93% (7/118) 2.39 0.000405 0.010208
GO:0004180 carboxypeptidase activity 2.54% (3/118) 4.37 0.00042 0.010458
GO:0009607 response to biotic stimulus 28.81% (34/118) 0.82 0.000453 0.010723
GO:0071555 cell wall organization 9.32% (11/118) 1.75 0.000453 0.010841
GO:0031348 negative regulation of defense response 6.78% (8/118) 2.16 0.00045 0.010908
GO:0005976 polysaccharide metabolic process 8.47% (10/118) 1.87 0.000448 0.011001
GO:0006725 cellular aromatic compound metabolic process 27.12% (32/118) 0.85 0.000529 0.012347
GO:0006720 isoprenoid metabolic process 9.32% (11/118) 1.71 0.000568 0.013098
GO:0008299 isoprenoid biosynthetic process 8.47% (10/118) 1.81 0.000599 0.013664
GO:0048598 embryonic morphogenesis 5.08% (6/118) 2.54 0.000613 0.013799
GO:0034293 sexual sporulation 4.24% (5/118) 2.87 0.000636 0.014167
GO:0060027 convergent extension involved in gastrulation 1.69% (2/118) 5.67 0.00069 0.015173
GO:0046906 tetrapyrrole binding 5.93% (7/118) 2.25 0.000709 0.01541
GO:0006082 organic acid metabolic process 16.1% (19/118) 1.16 0.000748 0.016074
GO:0050829 defense response to Gram-negative bacterium 4.24% (5/118) 2.81 0.000773 0.016436
GO:0045824 negative regulation of innate immune response 3.39% (4/118) 3.28 0.000792 0.016641
GO:0010080 regulation of floral meristem growth 1.69% (2/118) 5.56 0.000803 0.016696
GO:0006952 defense response 24.58% (29/118) 0.86 0.000858 0.017647
GO:0046890 regulation of lipid biosynthetic process 5.93% (7/118) 2.2 0.000886 0.018023
GO:1905392 plant organ morphogenesis 7.63% (9/118) 1.86 0.000912 0.018362
GO:0035329 hippo signaling 1.69% (2/118) 5.46 0.000925 0.018417
GO:0072593 reactive oxygen species metabolic process 4.24% (5/118) 2.75 0.000948 0.018676
GO:0009696 salicylic acid metabolic process 3.39% (4/118) 3.19 0.001005 0.019199
GO:0051707 response to other organism 26.27% (31/118) 0.81 0.000988 0.019262
GO:0043436 oxoacid metabolic process 15.25% (18/118) 1.17 0.001021 0.019315
GO:0043231 intracellular membrane-bounded organelle 49.15% (58/118) 0.49 0.001002 0.019335
GO:0009554 megasporogenesis 2.54% (3/118) 3.91 0.001068 0.020013
GO:0008514 organic anion transmembrane transporter activity 5.08% (6/118) 2.38 0.001116 0.020702
GO:0060026 convergent extension 1.69% (2/118) 5.28 0.001193 0.021704
GO:1990380 Lys48-specific deubiquitinase activity 1.69% (2/118) 5.28 0.001193 0.021704
GO:0042537 benzene-containing compound metabolic process 5.08% (6/118) 2.35 0.001208 0.02177
GO:0043227 membrane-bounded organelle 49.15% (58/118) 0.48 0.001355 0.022679
GO:1901566 organonitrogen compound biosynthetic process 13.56% (16/118) 1.23 0.001273 0.022728
GO:0043603 cellular amide metabolic process 8.47% (10/118) 1.66 0.001348 0.022768
GO:0000271 polysaccharide biosynthetic process 5.08% (6/118) 2.32 0.001375 0.022813
GO:0061578 Lys63-specific deubiquitinase activity 1.69% (2/118) 5.2 0.00134 0.022832
GO:0046278 3,4-dihydroxybenzoate metabolic process 1.69% (2/118) 5.2 0.00134 0.022832
GO:0047891 flavone 7-O-beta-glucosyltransferase activity 1.69% (2/118) 5.2 0.00134 0.022832
GO:0047913 gallate 1-beta-glucosyltransferase activity 1.69% (2/118) 5.2 0.00134 0.022832
GO:0050412 cinnamate beta-D-glucosyltransferase activity 1.69% (2/118) 5.2 0.00134 0.022832
GO:1901617 organic hydroxy compound biosynthetic process 5.93% (7/118) 2.08 0.001417 0.023311
GO:0009809 lignin biosynthetic process 4.24% (5/118) 2.6 0.001475 0.024058
GO:0030707 ovarian follicle cell development 1.69% (2/118) 5.12 0.001494 0.024162
GO:0044419 biological process involved in interspecies interaction between organisms 26.27% (31/118) 0.77 0.001579 0.025322
GO:0009813 flavonoid biosynthetic process 5.08% (6/118) 2.27 0.001636 0.026014
GO:0002009 morphogenesis of an epithelium 3.39% (4/118) 2.97 0.001764 0.02782
GO:0050284 sinapate 1-glucosyltransferase activity 1.69% (2/118) 4.98 0.001828 0.028578
GO:0048646 anatomical structure formation involved in morphogenesis 10.17% (12/118) 1.42 0.001864 0.028903
GO:0065008 regulation of biological quality 21.19% (25/118) 0.88 0.001879 0.028904
GO:0009801 cinnamic acid ester metabolic process 1.69% (2/118) 4.91 0.002006 0.03037
GO:0006950 response to stress 40.68% (48/118) 0.54 0.001999 0.030502
GO:0043934 sporulation 4.24% (5/118) 2.48 0.00213 0.031977
GO:0016491 oxidoreductase activity 14.41% (17/118) 1.11 0.002229 0.032954
GO:0045489 pectin biosynthetic process 3.39% (4/118) 2.88 0.002219 0.033054
GO:0044255 cellular lipid metabolic process 13.56% (16/118) 1.14 0.002395 0.03382
GO:1901618 organic hydroxy compound transmembrane transporter activity 2.54% (3/118) 3.51 0.002363 0.033877
GO:0016740 transferase activity 25.42% (30/118) 0.75 0.002315 0.033951
GO:0016926 protein desumoylation 1.69% (2/118) 4.79 0.002388 0.03397
GO:0098869 cellular oxidant detoxification 3.39% (4/118) 2.86 0.002355 0.034018
GO:0044281 small molecule metabolic process 18.64% (22/118) 0.93 0.002342 0.034079
GO:0009753 response to jasmonic acid 6.78% (8/118) 1.78 0.002472 0.034644
GO:0008238 exopeptidase activity 2.54% (3/118) 3.48 0.002521 0.035075
GO:0032352 positive regulation of hormone metabolic process 2.54% (3/118) 3.46 0.002602 0.035424
GO:0042538 hyperosmotic salinity response 4.24% (5/118) 2.41 0.002597 0.035611
GO:0032501 multicellular organismal process 28.81% (34/118) 0.68 0.002639 0.035667
GO:0032787 monocarboxylic acid metabolic process 10.17% (12/118) 1.36 0.002591 0.035785
GO:0016021 integral component of membrane 16.1% (19/118) 1.01 0.002676 0.035913
GO:0048236 plant-type sporogenesis 3.39% (4/118) 2.8 0.002697 0.035928
GO:2000488 positive regulation of brassinosteroid biosynthetic process 1.69% (2/118) 4.62 0.003019 0.036381
GO:0032973 amino acid export across plasma membrane 1.69% (2/118) 4.62 0.003019 0.036381
GO:0032502 developmental process 38.98% (46/118) 0.53 0.003065 0.0367
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 7.63% (9/118) 1.6 0.003085 0.036714
GO:0009025 tagatose-bisphosphate aldolase activity 0.85% (1/118) 8.37 0.003019 0.036849
GO:0019413 acetate biosynthetic process 0.85% (1/118) 8.37 0.003019 0.036849
GO:0019542 propionate biosynthetic process 0.85% (1/118) 8.37 0.003019 0.036849
GO:0007159 leukocyte cell-cell adhesion 0.85% (1/118) 8.37 0.003019 0.036849
GO:0061756 leukocyte adhesion to vascular endothelial cell 0.85% (1/118) 8.37 0.003019 0.036849
GO:0071772 response to BMP 0.85% (1/118) 8.37 0.003019 0.036849
GO:0071773 cellular response to BMP stimulus 0.85% (1/118) 8.37 0.003019 0.036849
GO:0098868 bone growth 0.85% (1/118) 8.37 0.003019 0.036849
GO:0043916 DNA-7-methylguanine glycosylase activity 0.85% (1/118) 8.37 0.003019 0.036849
GO:0052821 DNA-7-methyladenine glycosylase activity 0.85% (1/118) 8.37 0.003019 0.036849
GO:0052822 DNA-3-methylguanine glycosylase activity 0.85% (1/118) 8.37 0.003019 0.036849
GO:0070301 cellular response to hydrogen peroxide 2.54% (3/118) 3.34 0.003311 0.037067
GO:0009934 regulation of meristem structural organization 2.54% (3/118) 3.34 0.003311 0.037067
GO:0006629 lipid metabolic process 15.25% (18/118) 1.02 0.003145 0.037195
GO:0033692 cellular polysaccharide biosynthetic process 4.24% (5/118) 2.34 0.003177 0.037335
GO:0044038 cell wall macromolecule biosynthetic process 3.39% (4/118) 2.72 0.003299 0.037372
GO:0070589 cellular component macromolecule biosynthetic process 3.39% (4/118) 2.72 0.003299 0.037372
GO:0048729 tissue morphogenesis 3.39% (4/118) 2.72 0.003299 0.037372
GO:0033494 ferulate metabolic process 1.69% (2/118) 4.56 0.003245 0.037434
GO:0034639 L-amino acid efflux transmembrane transporter activity 1.69% (2/118) 4.56 0.003245 0.037434
GO:0090698 post-embryonic plant morphogenesis 5.93% (7/118) 1.9 0.00283 0.037445
GO:0050777 negative regulation of immune response 3.39% (4/118) 2.73 0.003241 0.037846
GO:0006807 nitrogen compound metabolic process 39.83% (47/118) 0.51 0.003469 0.03838
GO:0033993 response to lipid 16.95% (20/118) 0.94 0.003468 0.038601
GO:0120251 hydrocarbon biosynthetic process 5.93% (7/118) 1.85 0.003515 0.038667
GO:0009620 response to fungus 12.71% (15/118) 1.15 0.003016 0.039632
GO:0009808 lignin metabolic process 4.24% (5/118) 2.28 0.003893 0.040915
GO:0098791 Golgi apparatus subcompartment 6.78% (8/118) 1.67 0.003855 0.040972
GO:0050789 regulation of biological process 45.76% (54/118) 0.45 0.003878 0.040988
GO:0070542 response to fatty acid 6.78% (8/118) 1.67 0.0038 0.04108
GO:0003682 chromatin binding 5.93% (7/118) 1.82 0.003822 0.041087
GO:0019216 regulation of lipid metabolic process 5.93% (7/118) 1.82 0.003854 0.041195
GO:0005342 organic acid transmembrane transporter activity 4.24% (5/118) 2.28 0.003797 0.041291
GO:0046943 carboxylic acid transmembrane transporter activity 4.24% (5/118) 2.28 0.003797 0.041291
GO:0009637 response to blue light 4.24% (5/118) 2.26 0.004039 0.042215
GO:1900150 regulation of defense response to fungus 4.24% (5/118) 2.26 0.004088 0.042498
GO:0052638 indole-3-butyrate beta-glucosyltransferase activity 1.69% (2/118) 4.37 0.004224 0.043674
GO:0071475 cellular hyperosmotic salinity response 1.69% (2/118) 4.33 0.004488 0.046148
GO:0016053 organic acid biosynthetic process 8.47% (10/118) 1.41 0.004669 0.047751
GO:0010091 trichome branching 3.39% (4/118) 2.57 0.004766 0.048219
GO:0002831 regulation of response to biotic stimulus 10.17% (12/118) 1.25 0.004765 0.048469
GO:0015711 organic anion transport 5.08% (6/118) 1.95 0.004841 0.048724
GO:0050794 regulation of cellular process 40.68% (48/118) 0.48 0.004929 0.049078
GO:0120252 hydrocarbon metabolic process 5.93% (7/118) 1.76 0.004904 0.049092
GO:0009712 catechol-containing compound metabolic process 1.69% (2/118) 4.24 0.005038 0.049642
GO:1902448 positive regulation of shade avoidance 1.69% (2/118) 4.24 0.005038 0.049642
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_167 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_174 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_182 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_184 0.013 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_191 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_211 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_231 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_265 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_1 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_16 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_71 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_92 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_103 0.022 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_104 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_123 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_143 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (118) (download table)

InterPro Domains

GO Terms

Family Terms