SOLTUB.AGRIA.G00000019085

Description : Zinc finger CCCH domain protein

Gene families : OG_02_0006063 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000019085
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_75

Type	GO Term	Name	Evidence	Source
CC	GO:0000932	P-body	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003700	DNA-binding transcription factor activity	IEA	AHRD
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003727	single-stranded RNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006979	response to oxidative stress	IEA	AHRD
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	AHRD
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IEA	AHRD
BP	GO:0009867	jasmonic acid mediated signaling pathway	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009896	positive regulation of catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010029	regulation of seed germination	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010150	leaf senescence	IEA	AHRD
BP	GO:0010187	negative regulation of seed germination	IEA	AHRD
BP	GO:0010200	response to chitin	IEA	AHRD
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
CC	GO:0010494	cytoplasmic stress granule	IEA	AHRD
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0017148	negative regulation of translation	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0031331	positive regulation of cellular catabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034249	negative regulation of cellular amide metabolic process	None	Extended
CC	GO:0035770	ribonucleoprotein granule	None	Extended
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043487	regulation of RNA stability	None	Extended
BP	GO:0043488	regulation of mRNA stability	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048513	animal organ development	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048581	negative regulation of post-embryonic development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050779	RNA destabilization	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050832	defense response to fungus	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051607	defense response to virus	IEA	AHRD
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061013	regulation of mRNA catabolic process	None	Extended
BP	GO:0061014	positive regulation of mRNA catabolic process	None	Extended
BP	GO:0061157	mRNA destabilization	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090693	plant organ senescence	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:0140546	defense response to symbiont	None	Extended
BP	GO:1900140	regulation of seedling development	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902074	response to salt	IEA	AHRD
BP	GO:1903311	regulation of mRNA metabolic process	None	Extended
BP	GO:1903313	positive regulation of mRNA metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000117	regulation of transcription involved in G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
MF	GO:0004568	chitinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004602	glutathione peroxidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004623	phospholipase A2 activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Predict GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Predict GO terms from Neighborhoods
BP	GO:0006030	chitin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006032	chitin catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006277	DNA amplification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006569	tryptophan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006949	syncytium formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007099	centriole replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0007141	male meiosis I	IEP	Predict GO terms from Neighborhoods
BP	GO:0007263	nitric oxide mediated signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0007307	eggshell chorion gene amplification	IEP	Predict GO terms from Neighborhoods
BP	GO:0008037	cell recognition	IEP	Predict GO terms from Neighborhoods
MF	GO:0008379	thioredoxin peroxidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008843	endochitinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009505	plant-type cell wall	IEP	Predict GO terms from Neighborhoods
BP	GO:0009639	response to red or far red light	IEP	Predict GO terms from Neighborhoods
BP	GO:0009664	plant-type cell wall organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009739	response to gibberellin	IEP	Predict GO terms from Neighborhoods
BP	GO:0009827	plant-type cell wall modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009828	plant-type cell wall loosening	IEP	Predict GO terms from Neighborhoods
BP	GO:0009875	pollen-pistil interaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0010114	response to red light	IEP	Predict GO terms from Neighborhoods
BP	GO:0010311	lateral root formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010712	regulation of collagen metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010714	positive regulation of collagen metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010929	positive regulation of auxin mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0014015	positive regulation of gliogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0016102	diterpenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0018675	(S)-limonene 6-monooxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019756	cyanogenic glycoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Predict GO terms from Neighborhoods
CC	GO:0031523	Myb complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0032526	response to retinoic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0032965	regulation of collagen biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032967	positive regulation of collagen biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0033646	host intracellular part	IEP	Predict GO terms from Neighborhoods
CC	GO:0033647	host intracellular organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0034587	piRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035834	indole alkaloid metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042025	host cell nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0042341	cyanogenic glycoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042545	cell wall modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0043370	regulation of CD4-positive, alpha-beta T cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043372	positive regulation of CD4-positive, alpha-beta T cell differentiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0043667	pollen wall	IEP	Predict GO terms from Neighborhoods
BP	GO:0045229	external encapsulating structure organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045487	gibberellin catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0045543	gibberellin 2-beta-dioxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045580	regulation of T cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045582	positive regulation of T cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045621	positive regulation of lymphocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045622	regulation of T-helper cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045624	positive regulation of T-helper cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045792	negative regulation of cell size	IEP	Predict GO terms from Neighborhoods
BP	GO:0046634	regulation of alpha-beta T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046635	positive regulation of alpha-beta T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046637	regulation of alpha-beta T cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046638	positive regulation of alpha-beta T cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0047184	1-acylglycerophosphocholine O-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047499	calcium-independent phospholipase A2 activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048145	regulation of fibroblast proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048146	positive regulation of fibroblast proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048536	spleen development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048538	thymus development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048544	recognition of pollen	IEP	Predict GO terms from Neighborhoods
BP	GO:0048566	embryonic digestive tract development	IEP	Predict GO terms from Neighborhoods
MF	GO:0050525	cutinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050529	polyneuridine-aldehyde esterase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050898	nitrile metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051791	medium-chain fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0051920	peroxiredoxin activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052634	C-19 gibberellin 2-beta-dioxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0055089	fatty acid homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060251	regulation of glial cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060252	positive regulation of glial cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060320	rejection of self pollen	IEP	Predict GO terms from Neighborhoods
BP	GO:0070741	response to interleukin-6	IEP	Predict GO terms from Neighborhoods
BP	GO:0071300	cellular response to retinoic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0071354	cellular response to interleukin-6	IEP	Predict GO terms from Neighborhoods
BP	GO:0071555	cell wall organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071634	regulation of transforming growth factor beta production	IEP	Predict GO terms from Neighborhoods
BP	GO:0071636	positive regulation of transforming growth factor beta production	IEP	Predict GO terms from Neighborhoods
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0080028	nitrile biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090282	positive regulation of transcription involved in G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0098534	centriole assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0140824	thioredoxin-dependent peroxiredoxin activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901533	negative regulation of hematopoietic progenitor cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904095	negative regulation of endosperm development	IEP	Predict GO terms from Neighborhoods
BP	GO:1904897	regulation of hepatic stellate cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904899	positive regulation of hepatic stellate cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905393	plant organ formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1990511	piRNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000489	regulation of hepatic stellate cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000491	positive regulation of hepatic stellate cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000514	regulation of CD4-positive, alpha-beta T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000516	positive regulation of CD4-positive, alpha-beta T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000692	negative regulation of seed maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000843	regulation of testosterone secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:2000845	positive regulation of testosterone secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:2001279	regulation of unsaturated fatty acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2001280	positive regulation of unsaturated fatty acid biosynthetic process	IEP	Predict GO terms from Neighborhoods

No InterPro domains available for this sequence

External Links

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SOLTUB.AGRIA.G00000019085

Expression Profile

Co-expression Networks

Functional Annotation