SOLTUB.AGRIA.G00000019604

Description : Dna-directed rna polymerases i, ii, and iii subunit rpabc1

Gene families : OG_02_0027303 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000019604
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_54

Type	GO Term	Name	Evidence	Source
CC	GO:0000418	RNA polymerase IV complex	IEA	AHRD
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
MF	GO:0001054	RNA polymerase I activity	IEA	AHRD
MF	GO:0001055	RNA polymerase II activity	IEA	AHRD
MF	GO:0001056	RNA polymerase III activity	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	None	Extended
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005665	RNA polymerase II, core complex	IEA	AHRD
CC	GO:0005666	RNA polymerase III complex	IEA	AHRD
CC	GO:0005736	RNA polymerase I complex	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	None	Extended
BP	GO:0006360	transcription by RNA polymerase I	IEA	AHRD
BP	GO:0006366	transcription by RNA polymerase II	IEA	AHRD
BP	GO:0006383	transcription by RNA polymerase III	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009304	tRNA transcription	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0042797	tRNA transcription by RNA polymerase III	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
BP	GO:0098781	ncRNA transcription	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0001221	transcription coregulator binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001223	transcription coactivator binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001745	compound eye morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0001932	regulation of protein phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0004022	alcohol dehydrogenase (NAD+) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004708	MAP kinase kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005742	mitochondrial outer membrane translocase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006626	protein targeting to mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0006839	mitochondrial transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008320	protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010026	trichome differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010052	guard cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010375	stomatal complex patterning	IEP	Predict GO terms from Neighborhoods
BP	GO:0010440	stomatal lineage progression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010448	vegetative meristem growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0010449	root meristem growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0010622	specification of ovule identity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015450	protein-transporting ATPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0018455	alcohol dehydrogenase [NAD(P)+] activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0018674	(S)-limonene 3-monooxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0018675	(S)-limonene 6-monooxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019113	limonene monooxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019207	kinase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019887	protein kinase regulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
MF	GO:0030234	enzyme regulator activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0031304	intrinsic component of mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031305	integral component of mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031399	regulation of protein modification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032206	positive regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032986	protein-DNA complex disassembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0033186	CAF-1 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034264	isopentenyl adenine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034265	isopentenyl adenine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035195	miRNA-mediated gene silencing	IEP	Predict GO terms from Neighborhoods
CC	GO:0036477	somatodendritic compartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0042325	regulation of phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043549	regulation of kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0044770	cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0044772	mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0044819	mitotic G1/S transition checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0045859	regulation of protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048281	inflorescence morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048283	indeterminate inflorescence morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048578	positive regulation of long-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0048580	regulation of post-embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048592	eye morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050768	negative regulation of neurogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050790	regulation of catalytic activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051301	cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0051338	regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051438	regulation of ubiquitin-protein transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051444	negative regulation of ubiquitin-protein transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051961	negative regulation of nervous system development	IEP	Predict GO terms from Neighborhoods
MF	GO:0055105	ubiquitin-protein transferase inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0055106	ubiquitin-protein transferase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0062150	amorpha-4,11-diene 12-monooxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070180	large ribosomal subunit rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070585	protein localization to mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0071236	cellular response to antibiotic	IEP	Predict GO terms from Neighborhoods
BP	GO:0071249	cellular response to nitrate	IEP	Predict GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0072331	signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:0072594	establishment of protein localization to organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0072716	response to actinomycin D	IEP	Predict GO terms from Neighborhoods
BP	GO:0072717	cellular response to actinomycin D	IEP	Predict GO terms from Neighborhoods
BP	GO:0080186	developmental vegetative growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0090596	sensory organ morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0098772	molecular function regulator activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0098798	mitochondrial protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098799	outer mitochondrial membrane protein complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0140318	protein transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901699	cellular response to nitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:1901798	positive regulation of signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:1902170	cellular response to reactive nitrogen species	IEP	Predict GO terms from Neighborhoods
BP	GO:1902457	negative regulation of stomatal opening	IEP	Predict GO terms from Neighborhoods
BP	GO:1902533	positive regulation of intracellular signal transduction	IEP	Predict GO terms from Neighborhoods
CC	GO:1902554	serine/threonine protein kinase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1902807	negative regulation of cell cycle G1/S phase transition	IEP	Predict GO terms from Neighborhoods
CC	GO:1902911	protein kinase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1903047	mitotic cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903050	regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904666	regulation of ubiquitin protein ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904667	negative regulation of ubiquitin protein ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:1990948	ubiquitin ligase inhibitor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2000038	regulation of stomatal complex development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000058	regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000122	negative regulation of stomatal complex development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000134	negative regulation of G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000783	RNA_pol_subH/Rpb5_C	38	87
IPR035913	RPB5-like_sf	36	88
IPR005571	RNA_pol_Rpb5_N	6	48
IPR036710	RNA_pol_Rpb5_N_sf	6	47

External Links

No external refs found!

SOLTUB.AGRIA.G00000019604

Expression Profile

Co-expression Networks

Functional Annotation