SOLTUB.AGRIA.G00000020429


Description : 60S ribosomal protein L10-like protein


Gene families : OG_02_0000819 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000020429
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_16


Type GO Term Name Evidence Source
BP GO:0000027 ribosomal large subunit assembly IEA AHRD
BP GO:0002181 cytoplasmic translation IEA AHRD
MF GO:0003729 mRNA binding IEA AHRD
MF GO:0003735 structural constituent of ribosome IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005774 vacuolar membrane IEA AHRD
BP GO:0006417 regulation of translation IEA AHRD
BP GO:0007420 brain development IEA AHRD
CC GO:0009941 chloroplast envelope IEA AHRD
CC GO:0022625 cytosolic large ribosomal subunit IEA AHRD
CC GO:0042788 polysomal ribosome IEA AHRD
MF GO:0045182 translation regulator activity IEA AHRD
BP GO:0051607 defense response to virus IEA AHRD
BP GO:0071493 cellular response to UV-B IEA AHRD
CC GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane IEA AHRD
BP GO:1990403 embryonic brain development IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000054 ribosomal subunit export from nucleus IEP Predict GO terms from Neighborhoods
CC GO:0000138 Golgi trans cisterna IEP Predict GO terms from Neighborhoods
CC GO:0000228 nuclear chromosome IEP Predict GO terms from Neighborhoods
BP GO:0000266 mitochondrial fission IEP Predict GO terms from Neighborhoods
BP GO:0000338 protein deneddylation IEP Predict GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predict GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predict GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000429 carbon catabolite regulation of transcription from RNA polymerase II promoter IEP Predict GO terms from Neighborhoods
BP GO:0000430 regulation of transcription from RNA polymerase II promoter by glucose IEP Predict GO terms from Neighborhoods
BP GO:0000433 carbon catabolite repression of transcription from RNA polymerase II promoter by glucose IEP Predict GO terms from Neighborhoods
BP GO:0000460 maturation of 5.8S rRNA IEP Predict GO terms from Neighborhoods
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000470 maturation of LSU-rRNA IEP Predict GO terms from Neighborhoods
BP GO:0000491 small nucleolar ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0000492 box C/D snoRNP assembly IEP Predict GO terms from Neighborhoods
BP GO:0001501 skeletal system development IEP Predict GO terms from Neighborhoods
BP GO:0001503 ossification IEP Predict GO terms from Neighborhoods
BP GO:0001522 pseudouridine synthesis IEP Predict GO terms from Neighborhoods
CC GO:0001651 dense fibrillar component IEP Predict GO terms from Neighborhoods
BP GO:0001732 formation of cytoplasmic translation initiation complex IEP Predict GO terms from Neighborhoods
BP GO:0002943 tRNA dihydrouridine synthesis IEP Predict GO terms from Neighborhoods
BP GO:0003008 system process IEP Predict GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0003916 DNA topoisomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Predict GO terms from Neighborhoods
MF GO:0005178 integrin binding IEP Predict GO terms from Neighborhoods
MF GO:0005539 glycosaminoglycan binding IEP Predict GO terms from Neighborhoods
CC GO:0005638 lamin filament IEP Predict GO terms from Neighborhoods
CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005690 U4atac snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005797 Golgi medial cisterna IEP Predict GO terms from Neighborhoods
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predict GO terms from Neighborhoods
CC GO:0005882 intermediate filament IEP Predict GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006265 DNA topological change IEP Predict GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006415 translational termination IEP Predict GO terms from Neighborhoods
BP GO:0006450 regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0006821 chloride transport IEP Predict GO terms from Neighborhoods
BP GO:0006913 nucleocytoplasmic transport IEP Predict GO terms from Neighborhoods
BP GO:0006914 autophagy IEP Predict GO terms from Neighborhoods
BP GO:0007338 single fertilization IEP Predict GO terms from Neighborhoods
BP GO:0007498 mesoderm development IEP Predict GO terms from Neighborhoods
BP GO:0007600 sensory perception IEP Predict GO terms from Neighborhoods
BP GO:0007605 sensory perception of sound IEP Predict GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Predict GO terms from Neighborhoods
CC GO:0008180 COP9 signalosome IEP Predict GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Predict GO terms from Neighborhoods
MF GO:0008428 ribonuclease inhibitor activity IEP Predict GO terms from Neighborhoods
BP GO:0009663 plasmodesma organization IEP Predict GO terms from Neighborhoods
BP GO:0009920 cell plate formation involved in plant-type cell wall biogenesis IEP Predict GO terms from Neighborhoods
MF GO:0009982 pseudouridine synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0010215 cellulose microfibril organization IEP Predict GO terms from Neighborhoods
BP GO:0010387 COP9 signalosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0010628 positive regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010923 negative regulation of phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0010981 regulation of cell wall macromolecule metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0014069 postsynaptic density IEP Predict GO terms from Neighborhoods
CC GO:0015935 small ribosomal subunit IEP Predict GO terms from Neighborhoods
MF GO:0016018 cyclosporin A binding IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016236 macroautophagy IEP Predict GO terms from Neighborhoods
MF GO:0016853 isomerase activity IEP Predict GO terms from Neighborhoods
BP GO:0017148 negative regulation of translation IEP Predict GO terms from Neighborhoods
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0019217 regulation of fatty acid metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predict GO terms from Neighborhoods
CC GO:0022627 cytosolic small ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0030490 maturation of SSU-rRNA IEP Predict GO terms from Neighborhoods
BP GO:0030593 neutrophil chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0030595 leukocyte chemotaxis IEP Predict GO terms from Neighborhoods
MF GO:0030621 U4 snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0030622 U4atac snRNA binding IEP Predict GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Predict GO terms from Neighborhoods
CC GO:0031428 box C/D RNP complex IEP Predict GO terms from Neighborhoods
BP GO:0031503 protein-containing complex localization IEP Predict GO terms from Neighborhoods
CC GO:0031672 A band IEP Predict GO terms from Neighborhoods
CC GO:0031985 Golgi cisterna IEP Predict GO terms from Neighborhoods
CC GO:0032040 small-subunit processome IEP Predict GO terms from Neighborhoods
BP GO:0032069 regulation of nuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0032074 negative regulation of nuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0032148 activation of protein kinase B activity IEP Predict GO terms from Neighborhoods
BP GO:0032515 negative regulation of phosphoprotein phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0032790 ribosome disassembly IEP Predict GO terms from Neighborhoods
CC GO:0032838 plasma membrane bounded cell projection cytoplasm IEP Predict GO terms from Neighborhoods
CC GO:0033290 eukaryotic 48S preinitiation complex IEP Predict GO terms from Neighborhoods
CC GO:0033291 eukaryotic 80S initiation complex IEP Predict GO terms from Neighborhoods
BP GO:0033750 ribosome localization IEP Predict GO terms from Neighborhoods
BP GO:0034109 homotypic cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034395 regulation of transcription from RNA polymerase II promoter in response to iron IEP Predict GO terms from Neighborhoods
BP GO:0034396 negative regulation of transcription from RNA polymerase II promoter in response to iron IEP Predict GO terms from Neighborhoods
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0034463 90S preribosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0034511 U3 snoRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0034512 box C/D RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035278 miRNA-mediated gene silencing by inhibition of translation IEP Predict GO terms from Neighborhoods
BP GO:0035305 negative regulation of dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0035307 positive regulation of protein dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0035308 negative regulation of protein dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0035640 exploration behavior IEP Predict GO terms from Neighborhoods
BP GO:0035641 locomotory exploration behavior IEP Predict GO terms from Neighborhoods
BP GO:0042118 endothelial cell activation IEP Predict GO terms from Neighborhoods
BP GO:0042255 ribosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0042256 mature ribosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0042273 ribosomal large subunit biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0042474 middle ear morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:0043021 ribonucleoprotein complex binding IEP Predict GO terms from Neighborhoods
MF GO:0043022 ribosome binding IEP Predict GO terms from Neighborhoods
MF GO:0043024 ribosomal small subunit binding IEP Predict GO terms from Neighborhoods
BP GO:0045013 carbon catabolite repression of transcription IEP Predict GO terms from Neighborhoods
BP GO:0045014 carbon catabolite repression of transcription by glucose IEP Predict GO terms from Neighborhoods
CC GO:0045202 synapse IEP Predict GO terms from Neighborhoods
BP GO:0045292 mRNA cis splicing, via spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0045334 clathrin-coated endocytic vesicle IEP Predict GO terms from Neighborhoods
BP GO:0045652 regulation of megakaryocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0045794 negative regulation of cell volume IEP Predict GO terms from Neighborhoods
BP GO:0045903 positive regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0046015 regulation of transcription by glucose IEP Predict GO terms from Neighborhoods
BP GO:0046785 microtubule polymerization IEP Predict GO terms from Neighborhoods
BP GO:0048318 axial mesoderm development IEP Predict GO terms from Neighborhoods
BP GO:0048525 negative regulation of viral process IEP Predict GO terms from Neighborhoods
BP GO:0048598 embryonic morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048731 system development IEP Predict GO terms from Neighborhoods
BP GO:0050877 nervous system process IEP Predict GO terms from Neighborhoods
BP GO:0050954 sensory perception of mechanical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0051092 positive regulation of NF-kappaB transcription factor activity IEP Predict GO terms from Neighborhoods
BP GO:0051168 nuclear export IEP Predict GO terms from Neighborhoods
BP GO:0051169 nuclear transport IEP Predict GO terms from Neighborhoods
BP GO:0051247 positive regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051346 negative regulation of hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0060352 cell adhesion molecule production IEP Predict GO terms from Neighborhoods
MF GO:0060698 endoribonuclease inhibitor activity IEP Predict GO terms from Neighborhoods
BP GO:0060699 regulation of endoribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0060700 regulation of ribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0060701 negative regulation of ribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0060702 negative regulation of endoribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0061083 regulation of protein refolding IEP Predict GO terms from Neighborhoods
BP GO:0061919 process utilizing autophagic mechanism IEP Predict GO terms from Neighborhoods
BP GO:0061944 negative regulation of protein K48-linked ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0061945 regulation of protein K48-linked ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0061984 catabolite repression IEP Predict GO terms from Neighborhoods
BP GO:0061985 carbon catabolite repression IEP Predict GO terms from Neighborhoods
BP GO:0061986 negative regulation of transcription by glucose IEP Predict GO terms from Neighborhoods
BP GO:0061987 negative regulation of transcription from RNA polymerase II promoter by glucose IEP Predict GO terms from Neighborhoods
MF GO:0070122 obsolete isopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay IEP Predict GO terms from Neighborhoods
BP GO:0070527 platelet aggregation IEP Predict GO terms from Neighborhoods
CC GO:0070992 translation initiation complex IEP Predict GO terms from Neighborhoods
CC GO:0071011 precatalytic spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071621 granulocyte chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0080157 regulation of plant-type cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0097014 ciliary plasm IEP Predict GO terms from Neighborhoods
BP GO:0097529 myeloid leukocyte migration IEP Predict GO terms from Neighborhoods
BP GO:0097530 granulocyte migration IEP Predict GO terms from Neighborhoods
CC GO:0099081 supramolecular polymer IEP Predict GO terms from Neighborhoods
CC GO:0099512 supramolecular fiber IEP Predict GO terms from Neighborhoods
CC GO:0099513 polymeric cytoskeletal fiber IEP Predict GO terms from Neighborhoods
CC GO:0099568 cytoplasmic region IEP Predict GO terms from Neighborhoods
CC GO:0099572 postsynaptic specialization IEP Predict GO terms from Neighborhoods
MF GO:0106413 dihydrouridine synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0140721 nuclease inhibitor activity IEP Predict GO terms from Neighborhoods
BP GO:1901506 regulation of acylglycerol transport IEP Predict GO terms from Neighborhoods
BP GO:1901508 positive regulation of acylglycerol transport IEP Predict GO terms from Neighborhoods
BP GO:1902175 regulation of oxidative stress-induced intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1902176 negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1902914 regulation of protein polyubiquitination IEP Predict GO terms from Neighborhoods
BP GO:1902915 negative regulation of protein polyubiquitination IEP Predict GO terms from Neighborhoods
BP GO:1903201 regulation of oxidative stress-induced cell death IEP Predict GO terms from Neighborhoods
BP GO:1903202 negative regulation of oxidative stress-induced cell death IEP Predict GO terms from Neighborhoods
BP GO:1903332 regulation of protein folding IEP Predict GO terms from Neighborhoods
BP GO:1903901 negative regulation of viral life cycle IEP Predict GO terms from Neighborhoods
MF GO:1904399 heparan sulfate binding IEP Predict GO terms from Neighborhoods
BP GO:1904400 response to Thyroid stimulating hormone IEP Predict GO terms from Neighborhoods
BP GO:1904401 cellular response to Thyroid stimulating hormone IEP Predict GO terms from Neighborhoods
BP GO:1904587 response to glycoprotein IEP Predict GO terms from Neighborhoods
BP GO:1904588 cellular response to glycoprotein IEP Predict GO terms from Neighborhoods
BP GO:1905214 regulation of RNA binding IEP Predict GO terms from Neighborhoods
BP GO:1905216 positive regulation of RNA binding IEP Predict GO terms from Neighborhoods
BP GO:1905883 regulation of triglyceride transport IEP Predict GO terms from Neighborhoods
BP GO:1905885 positive regulation of triglyceride transport IEP Predict GO terms from Neighborhoods
BP GO:1905952 regulation of lipid localization IEP Predict GO terms from Neighborhoods
BP GO:1990266 neutrophil migration IEP Predict GO terms from Neighborhoods
MF GO:1990932 5.8S rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:2000694 regulation of phragmoplast microtubule organization IEP Predict GO terms from Neighborhoods
BP GO:2001009 regulation of plant-type cell wall cellulose biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 18 148
IPR036920 Ribosomal_L10e/L16_sf 11 152
No external refs found!