SOLTUB.AGRIA.G00000020489


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG_02_0000025 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000020489
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_118


Type GO Term Name Evidence Source
BP GO:0000966 RNA 5'-end processing IEA AHRD
MF GO:0003723 RNA binding IEA AHRD
MF GO:0004016 adenylate cyclase activity IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
BP GO:0009845 seed germination IEA AHRD
BP GO:0080156 mitochondrial mRNA modification IEA AHRD
BP GO:0090617 mitochondrial mRNA 5'-end processing IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000019 regulation of mitotic recombination IEP Predict GO terms from Neighborhoods
MF GO:0000166 nucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0000217 DNA secondary structure binding IEP Predict GO terms from Neighborhoods
BP GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEP Predict GO terms from Neighborhoods
MF GO:0000404 heteroduplex DNA loop binding IEP Predict GO terms from Neighborhoods
MF GO:0000405 bubble DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0000712 resolution of meiotic recombination intermediates IEP Predict GO terms from Neighborhoods
BP GO:0000713 meiotic heteroduplex formation IEP Predict GO terms from Neighborhoods
CC GO:0000795 synaptonemal complex IEP Predict GO terms from Neighborhoods
BP GO:0001666 response to hypoxia IEP Predict GO terms from Neighborhoods
CC GO:0001673 male germ cell nucleus IEP Predict GO terms from Neighborhoods
BP GO:0001845 phagolysosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0002200 somatic diversification of immune receptors IEP Predict GO terms from Neighborhoods
BP GO:0002230 positive regulation of defense response to virus by host IEP Predict GO terms from Neighborhoods
BP GO:0002239 response to oomycetes IEP Predict GO terms from Neighborhoods
BP GO:0002566 somatic diversification of immune receptors via somatic mutation IEP Predict GO terms from Neighborhoods
BP GO:0002637 regulation of immunoglobulin production IEP Predict GO terms from Neighborhoods
BP GO:0002639 positive regulation of immunoglobulin production IEP Predict GO terms from Neighborhoods
BP GO:0002696 positive regulation of leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0002700 regulation of production of molecular mediator of immune response IEP Predict GO terms from Neighborhoods
BP GO:0002702 positive regulation of production of molecular mediator of immune response IEP Predict GO terms from Neighborhoods
BP GO:0002703 regulation of leukocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002705 positive regulation of leukocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002706 regulation of lymphocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002708 positive regulation of lymphocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002712 regulation of B cell mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002714 positive regulation of B cell mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002819 regulation of adaptive immune response IEP Predict GO terms from Neighborhoods
BP GO:0002821 positive regulation of adaptive immune response IEP Predict GO terms from Neighborhoods
BP GO:0002822 regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains IEP Predict GO terms from Neighborhoods
BP GO:0002824 positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains IEP Predict GO terms from Neighborhoods
BP GO:0002889 regulation of immunoglobulin mediated immune response IEP Predict GO terms from Neighborhoods
BP GO:0002891 positive regulation of immunoglobulin mediated immune response IEP Predict GO terms from Neighborhoods
MF GO:0004015 adenosylmethionine-8-amino-7-oxononanoate transaminase activity IEP Predict GO terms from Neighborhoods
MF GO:0004141 dethiobiotin synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0004709 MAP kinase kinase kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0005200 structural constituent of cytoskeleton IEP Predict GO terms from Neighborhoods
CC GO:0005712 chiasma IEP Predict GO terms from Neighborhoods
CC GO:0005713 recombination nodule IEP Predict GO terms from Neighborhoods
CC GO:0005715 late recombination nodule IEP Predict GO terms from Neighborhoods
CC GO:0005737 cytoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005767 secondary lysosome IEP Predict GO terms from Neighborhoods
BP GO:0006298 mismatch repair IEP Predict GO terms from Neighborhoods
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predict GO terms from Neighborhoods
BP GO:0006768 biotin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0007040 lysosome organization IEP Predict GO terms from Neighborhoods
BP GO:0007060 male meiosis chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0007129 homologous chromosome pairing at meiosis IEP Predict GO terms from Neighborhoods
BP GO:0007260 tyrosine phosphorylation of STAT protein IEP Predict GO terms from Neighborhoods
BP GO:0007292 female gamete generation IEP Predict GO terms from Neighborhoods
MF GO:0008483 transaminase activity IEP Predict GO terms from Neighborhoods
BP GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:0009102 biotin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009743 response to carbohydrate IEP Predict GO terms from Neighborhoods
BP GO:0010344 seed oilbody biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010628 positive regulation of gene expression IEP Predict GO terms from Neighborhoods
CC GO:0012510 trans-Golgi network transport vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0016321 female meiosis chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0016445 somatic diversification of immunoglobulins IEP Predict GO terms from Neighborhoods
BP GO:0016446 somatic hypermutation of immunoglobulin genes IEP Predict GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predict GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predict GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predict GO terms from Neighborhoods
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predict GO terms from Neighborhoods
MF GO:0016882 cyclo-ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0018108 peptidyl-tyrosine phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0018212 peptidyl-tyrosine modification IEP Predict GO terms from Neighborhoods
CC GO:0030658 transport vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030660 Golgi-associated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030662 coated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030665 clathrin-coated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030666 endocytic vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030670 phagocytic vesicle membrane IEP Predict GO terms from Neighborhoods
MF GO:0030983 mismatched DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0031156 regulation of sorocarp development IEP Predict GO terms from Neighborhoods
CC GO:0032010 phagolysosome IEP Predict GO terms from Neighborhoods
MF GO:0032135 DNA insertion or deletion binding IEP Predict GO terms from Neighborhoods
MF GO:0032137 guanine/thymine mispair binding IEP Predict GO terms from Neighborhoods
CC GO:0032300 mismatch repair complex IEP Predict GO terms from Neighborhoods
CC GO:0032389 MutLalpha complex IEP Predict GO terms from Neighborhoods
MF GO:0032404 mismatch repair complex binding IEP Predict GO terms from Neighborhoods
MF GO:0032407 MutSalpha complex binding IEP Predict GO terms from Neighborhoods
BP GO:0034397 telomere localization IEP Predict GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Predict GO terms from Neighborhoods
BP GO:0036289 peptidyl-serine autophosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0036293 response to decreased oxygen levels IEP Predict GO terms from Neighborhoods
BP GO:0042306 regulation of protein import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0042307 positive regulation of protein import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0043060 meiotic metaphase I plate congression IEP Predict GO terms from Neighborhoods
CC GO:0043073 germ cell nucleus IEP Predict GO terms from Neighborhoods
BP GO:0043446 cellular alkane metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043447 alkane biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045132 meiotic chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0045141 meiotic telomere clustering IEP Predict GO terms from Neighborhoods
BP GO:0045191 regulation of isotype switching IEP Predict GO terms from Neighborhoods
CC GO:0045298 tubulin complex IEP Predict GO terms from Neighborhoods
BP GO:0045830 positive regulation of isotype switching IEP Predict GO terms from Neighborhoods
BP GO:0045910 negative regulation of DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0045911 positive regulation of DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0045950 negative regulation of mitotic recombination IEP Predict GO terms from Neighborhoods
BP GO:0046824 positive regulation of nucleocytoplasmic transport IEP Predict GO terms from Neighborhoods
BP GO:0048296 regulation of isotype switching to IgA isotypes IEP Predict GO terms from Neighborhoods
BP GO:0048298 positive regulation of isotype switching to IgA isotypes IEP Predict GO terms from Neighborhoods
BP GO:0048302 regulation of isotype switching to IgG isotypes IEP Predict GO terms from Neighborhoods
BP GO:0048304 positive regulation of isotype switching to IgG isotypes IEP Predict GO terms from Neighborhoods
BP GO:0048477 oogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050000 chromosome localization IEP Predict GO terms from Neighborhoods
BP GO:0050688 regulation of defense response to virus IEP Predict GO terms from Neighborhoods
BP GO:0050691 regulation of defense response to virus by host IEP Predict GO terms from Neighborhoods
BP GO:0050829 defense response to Gram-negative bacterium IEP Predict GO terms from Neighborhoods
BP GO:0050864 regulation of B cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050867 positive regulation of cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050871 positive regulation of B cell activation IEP Predict GO terms from Neighborhoods
BP GO:0051249 regulation of lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0051251 positive regulation of lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0051255 spindle midzone assembly IEP Predict GO terms from Neighborhoods
BP GO:0051257 meiotic spindle midzone assembly IEP Predict GO terms from Neighborhoods
BP GO:0051303 establishment of chromosome localization IEP Predict GO terms from Neighborhoods
BP GO:0051310 metaphase plate congression IEP Predict GO terms from Neighborhoods
BP GO:0051311 meiotic metaphase plate congression IEP Predict GO terms from Neighborhoods
BP GO:0060147 regulation of post-transcriptional gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0060149 negative regulation of post-transcriptional gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0060966 regulation of gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0060967 negative regulation of gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0070482 response to oxygen levels IEP Predict GO terms from Neighborhoods
BP GO:0071244 cellular response to carbon dioxide IEP Predict GO terms from Neighborhoods
BP GO:0071407 cellular response to organic cyclic compound IEP Predict GO terms from Neighborhoods
BP GO:0071446 cellular response to salicylic acid stimulus IEP Predict GO terms from Neighborhoods
BP GO:0080171 lytic vacuole organization IEP Predict GO terms from Neighborhoods
BP GO:0090220 chromosome localization to nuclear envelope involved in homologous chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0090316 positive regulation of intracellular protein transport IEP Predict GO terms from Neighborhoods
BP GO:0090378 seed trichome elongation IEP Predict GO terms from Neighborhoods
BP GO:0097193 intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0098813 nuclear chromosome segregation IEP Predict GO terms from Neighborhoods
CC GO:0099086 synaptonemal structure IEP Predict GO terms from Neighborhoods
BP GO:1900180 regulation of protein localization to nucleus IEP Predict GO terms from Neighborhoods
BP GO:1900182 positive regulation of protein localization to nucleus IEP Predict GO terms from Neighborhoods
BP GO:1900368 regulation of post-transcriptional gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:1900369 negative regulation of post-transcriptional gene silencing by RNA IEP Predict GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Predict GO terms from Neighborhoods
BP GO:1904892 regulation of receptor signaling pathway via STAT IEP Predict GO terms from Neighborhoods
BP GO:1904894 positive regulation of receptor signaling pathway via STAT IEP Predict GO terms from Neighborhoods
BP GO:2000035 regulation of stem cell division IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 426 450
IPR002885 Pentatricopeptide_repeat 108 128
IPR002885 Pentatricopeptide_repeat 459 481
IPR002885 Pentatricopeptide_repeat 349 398
IPR002885 Pentatricopeptide_repeat 139 188
IPR002885 Pentatricopeptide_repeat 279 327
IPR002885 Pentatricopeptide_repeat 209 258
IPR002885 Pentatricopeptide_repeat 489 537
IPR002885 Pentatricopeptide_repeat 317 351
IPR002885 Pentatricopeptide_repeat 493 526
IPR002885 Pentatricopeptide_repeat 212 246
IPR002885 Pentatricopeptide_repeat 141 175
IPR002885 Pentatricopeptide_repeat 458 481
IPR002885 Pentatricopeptide_repeat 387 420
IPR002885 Pentatricopeptide_repeat 422 448
IPR002885 Pentatricopeptide_repeat 282 315
IPR002885 Pentatricopeptide_repeat 527 560
IPR002885 Pentatricopeptide_repeat 248 280
IPR002885 Pentatricopeptide_repeat 352 386
No external refs found!