SOLTUB.AGRIA.G00000020969


Description : Pentatricopeptide repeat-containing protein family


Gene families : OG_02_0001966 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000020969
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_176


Type GO Term Name Evidence Source
BP GO:0000963 mitochondrial RNA processing IEA AHRD
MF GO:0003723 RNA binding IEA AHRD
BP GO:0006397 mRNA processing IEA AHRD
BP GO:0009451 RNA modification IEA AHRD
CC GO:0009536 plastid IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predict GO terms from Neighborhoods
CC GO:0000445 THO complex part of transcription export complex IEP Predict GO terms from Neighborhoods
BP GO:0000740 nuclear membrane fusion IEP Predict GO terms from Neighborhoods
BP GO:0000768 syncytium formation by plasma membrane fusion IEP Predict GO terms from Neighborhoods
CC GO:0000792 heterochromatin IEP Predict GO terms from Neighborhoods
BP GO:0000966 RNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0002230 positive regulation of defense response to virus by host IEP Predict GO terms from Neighborhoods
BP GO:0002263 cell activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002274 myeloid leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0002275 myeloid cell activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002281 macrophage activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002366 leukocyte activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002940 tRNA N2-guanine methylation IEP Predict GO terms from Neighborhoods
MF GO:0003756 protein disulfide isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0005635 nuclear envelope IEP Predict GO terms from Neighborhoods
CC GO:0005637 nuclear inner membrane IEP Predict GO terms from Neighborhoods
CC GO:0005737 cytoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005739 mitochondrion IEP Predict GO terms from Neighborhoods
CC GO:0005759 mitochondrial matrix IEP Predict GO terms from Neighborhoods
BP GO:0005991 trehalose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Predict GO terms from Neighborhoods
BP GO:0006403 RNA localization IEP Predict GO terms from Neighborhoods
BP GO:0006607 NLS-bearing protein import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006626 protein targeting to mitochondrion IEP Predict GO terms from Neighborhoods
BP GO:0006760 folic acid-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006913 nucleocytoplasmic transport IEP Predict GO terms from Neighborhoods
BP GO:0006949 syncytium formation IEP Predict GO terms from Neighborhoods
BP GO:0007349 cellularization IEP Predict GO terms from Neighborhoods
BP GO:0007447 imaginal disc pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0007450 dorsal/ventral pattern formation, imaginal disc IEP Predict GO terms from Neighborhoods
BP GO:0007525 somatic muscle development IEP Predict GO terms from Neighborhoods
BP GO:0007526 larval somatic muscle development IEP Predict GO terms from Neighborhoods
BP GO:0007566 embryo implantation IEP Predict GO terms from Neighborhoods
BP GO:0007622 rhythmic behavior IEP Predict GO terms from Neighborhoods
MF GO:0008061 chitin binding IEP Predict GO terms from Neighborhoods
MF GO:0008139 nuclear localization sequence binding IEP Predict GO terms from Neighborhoods
MF GO:0008175 tRNA methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0008298 intracellular mRNA localization IEP Predict GO terms from Neighborhoods
BP GO:0008587 imaginal disc-derived wing margin morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0008593 regulation of Notch signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0008841 dihydrofolate synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009558 embryo sac cellularization IEP Predict GO terms from Neighborhoods
BP GO:0009891 positive regulation of biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009893 positive regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009953 dorsal/ventral pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010017 red or far-red light signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010018 far-red light signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010019 chloroplast-nucleus signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010198 synergid death IEP Predict GO terms from Neighborhoods
BP GO:0010364 regulation of ethylene biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010455 positive regulation of cell fate commitment IEP Predict GO terms from Neighborhoods
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010609 mRNA localization resulting in post-transcriptional regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010628 positive regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0016073 snRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016180 snRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0016556 mRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0016584 obsolete nucleosome positioning IEP Predict GO terms from Neighborhoods
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Predict GO terms from Neighborhoods
MF GO:0016881 acid-amino acid ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0016989 sigma factor antagonist activity IEP Predict GO terms from Neighborhoods
CC GO:0019866 organelle inner membrane IEP Predict GO terms from Neighborhoods
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
BP GO:0030282 bone mineralization IEP Predict GO terms from Neighborhoods
BP GO:0030488 tRNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0030717 oocyte karyosome formation IEP Predict GO terms from Neighborhoods
BP GO:0030718 germ-line stem cell population maintenance IEP Predict GO terms from Neighborhoods
CC GO:0030895 apolipoprotein B mRNA editing enzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0031214 biomineral tissue development IEP Predict GO terms from Neighborhoods
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
CC GO:0031300 intrinsic component of organelle membrane IEP Predict GO terms from Neighborhoods
CC GO:0031301 integral component of organelle membrane IEP Predict GO terms from Neighborhoods
BP GO:0031323 regulation of cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031326 regulation of cellular biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0031335 regulation of sulfur amino acid metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0031965 nuclear membrane IEP Predict GO terms from Neighborhoods
CC GO:0031966 mitochondrial membrane IEP Predict GO terms from Neighborhoods
CC GO:0031974 membrane-enclosed lumen IEP Predict GO terms from Neighborhoods
CC GO:0032039 integrator complex IEP Predict GO terms from Neighborhoods
MF GO:0032452 histone demethylase activity IEP Predict GO terms from Neighborhoods
MF GO:0032453 histone H3-methyl-lysine-4 demethylase activity IEP Predict GO terms from Neighborhoods
BP GO:0032479 regulation of type I interferon production IEP Predict GO terms from Neighborhoods
BP GO:0032481 positive regulation of type I interferon production IEP Predict GO terms from Neighborhoods
BP GO:0032648 regulation of interferon-beta production IEP Predict GO terms from Neighborhoods
BP GO:0032728 positive regulation of interferon-beta production IEP Predict GO terms from Neighborhoods
BP GO:0033169 histone H3-K9 demethylation IEP Predict GO terms from Neighborhoods
MF GO:0033749 histone H3-methyl-arginine-3 demethylase activity IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034472 snRNA 3'-end processing IEP Predict GO terms from Neighborhoods
MF GO:0034647 histone H3-tri/di/monomethyl-lysine-4 demethylase activity IEP Predict GO terms from Neighborhoods
BP GO:0034720 histone H3-K4 demethylation IEP Predict GO terms from Neighborhoods
BP GO:0034721 histone H3-K4 demethylation, trimethyl-H3-K4-specific IEP Predict GO terms from Neighborhoods
BP GO:0035067 negative regulation of histone acetylation IEP Predict GO terms from Neighborhoods
BP GO:0035222 wing disc pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0036098 male germ-line stem cell population maintenance IEP Predict GO terms from Neighborhoods
CC GO:0036477 somatodendritic compartment IEP Predict GO terms from Neighborhoods
BP GO:0040009 regulation of growth rate IEP Predict GO terms from Neighborhoods
BP GO:0040010 positive regulation of growth rate IEP Predict GO terms from Neighborhoods
BP GO:0040029 epigenetic regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0042116 macrophage activation IEP Predict GO terms from Neighborhoods
MF GO:0042393 histone binding IEP Predict GO terms from Neighborhoods
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042461 photoreceptor cell development IEP Predict GO terms from Neighborhoods
BP GO:0042558 pteridine-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042660 positive regulation of cell fate specification IEP Predict GO terms from Neighborhoods
BP GO:0042753 positive regulation of circadian rhythm IEP Predict GO terms from Neighborhoods
CC GO:0043233 organelle lumen IEP Predict GO terms from Neighborhoods
BP GO:0043970 histone H3-K9 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0045138 nematode male tail tip morphogenesis IEP Predict GO terms from Neighborhoods
CC GO:0045293 mRNA editing complex IEP Predict GO terms from Neighborhoods
BP GO:0045475 locomotor rhythm IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0045747 positive regulation of Notch signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0045815 epigenetic maintenance of chromatin in transcription-competent conformation IEP Predict GO terms from Neighborhoods
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046579 positive regulation of Ras protein signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0048190 wing disc dorsal/ventral pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0048512 circadian behavior IEP Predict GO terms from Neighborhoods
BP GO:0048569 post-embryonic animal organ development IEP Predict GO terms from Neighborhoods
BP GO:0048577 negative regulation of short-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0050691 regulation of defense response to virus by host IEP Predict GO terms from Neighborhoods
BP GO:0050714 positive regulation of protein secretion IEP Predict GO terms from Neighborhoods
BP GO:0051057 positive regulation of small GTPase mediated signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0051169 nuclear transport IEP Predict GO terms from Neighborhoods
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051788 response to misfolded protein IEP Predict GO terms from Neighborhoods
BP GO:0061061 muscle structure development IEP Predict GO terms from Neighborhoods
BP GO:0061383 trabecula morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0061430 bone trabecula morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:0061608 nuclear import signal receptor activity IEP Predict GO terms from Neighborhoods
BP GO:0061647 histone H3-K9 modification IEP Predict GO terms from Neighborhoods
BP GO:0061988 karyosome formation IEP Predict GO terms from Neighborhoods
CC GO:0070013 intracellular organelle lumen IEP Predict GO terms from Neighborhoods
BP GO:0070193 synaptonemal complex organization IEP Predict GO terms from Neighborhoods
BP GO:0070741 response to interleukin-6 IEP Predict GO terms from Neighborhoods
CC GO:0070822 Sin3-type complex IEP Predict GO terms from Neighborhoods
BP GO:0071105 response to interleukin-11 IEP Predict GO terms from Neighborhoods
BP GO:0071216 cellular response to biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071218 cellular response to misfolded protein IEP Predict GO terms from Neighborhoods
BP GO:0071219 cellular response to molecule of bacterial origin IEP Predict GO terms from Neighborhoods
BP GO:0071222 cellular response to lipopolysaccharide IEP Predict GO terms from Neighborhoods
BP GO:0071310 cellular response to organic substance IEP Predict GO terms from Neighborhoods
BP GO:0071348 cellular response to interleukin-11 IEP Predict GO terms from Neighborhoods
BP GO:0071354 cellular response to interleukin-6 IEP Predict GO terms from Neighborhoods
BP GO:0071478 cellular response to radiation IEP Predict GO terms from Neighborhoods
BP GO:0071489 cellular response to red or far red light IEP Predict GO terms from Neighborhoods
BP GO:0071490 cellular response to far red light IEP Predict GO terms from Neighborhoods
MF GO:0071558 histone H3-tri/di-methyl-lysine-27 demethylase activity IEP Predict GO terms from Neighborhoods
BP GO:0071763 nuclear membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0072327 vulval cell fate specification IEP Predict GO terms from Neighborhoods
BP GO:0072675 osteoclast fusion IEP Predict GO terms from Neighborhoods
BP GO:0090598 male anatomical structure morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0090617 mitochondrial mRNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0098586 cellular response to virus IEP Predict GO terms from Neighborhoods
BP GO:0110148 biomineralization IEP Predict GO terms from Neighborhoods
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predict GO terms from Neighborhoods
BP GO:0140253 cell-cell fusion IEP Predict GO terms from Neighborhoods
MF GO:0140457 protein demethylase activity IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:1900036 positive regulation of cellular response to heat IEP Predict GO terms from Neighborhoods
BP GO:1900055 regulation of leaf senescence IEP Predict GO terms from Neighborhoods
BP GO:1900908 regulation of olefin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1900911 regulation of olefin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901402 negative regulation of tetrapyrrole metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901464 negative regulation of tetrapyrrole biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902325 negative regulation of chlorophyll biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000737 negative regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 357 390
IPR002885 Pentatricopeptide_repeat 428 460
IPR002885 Pentatricopeptide_repeat 322 356
IPR002885 Pentatricopeptide_repeat 218 250
IPR002885 Pentatricopeptide_repeat 497 531
IPR002885 Pentatricopeptide_repeat 678 707
IPR002885 Pentatricopeptide_repeat 991 1025
IPR002885 Pentatricopeptide_repeat 287 321
IPR002885 Pentatricopeptide_repeat 532 566
IPR002885 Pentatricopeptide_repeat 113 146
IPR002885 Pentatricopeptide_repeat 393 426
IPR002885 Pentatricopeptide_repeat 252 285
IPR002885 Pentatricopeptide_repeat 462 496
IPR002885 Pentatricopeptide_repeat 182 216
IPR002885 Pentatricopeptide_repeat 147 180
IPR002885 Pentatricopeptide_repeat 604 636
IPR002885 Pentatricopeptide_repeat 567 595
IPR002885 Pentatricopeptide_repeat 79 110
IPR002885 Pentatricopeptide_repeat 678 703
IPR002885 Pentatricopeptide_repeat 79 103
IPR002885 Pentatricopeptide_repeat 893 911
IPR002885 Pentatricopeptide_repeat 962 987
IPR002885 Pentatricopeptide_repeat 991 1017
IPR002885 Pentatricopeptide_repeat 285 333
IPR002885 Pentatricopeptide_repeat 494 543
IPR002885 Pentatricopeptide_repeat 109 158
IPR002885 Pentatricopeptide_repeat 602 649
IPR002885 Pentatricopeptide_repeat 390 438
IPR002885 Pentatricopeptide_repeat 214 261
IPR002885 Pentatricopeptide_repeat 455 487
IPR002885 Pentatricopeptide_repeat 350 381
IPR002885 Pentatricopeptide_repeat 560 593
IPR032867 DYW_dom 1127 1241
No external refs found!