SOLTUB.AGRIA.G00000021273

Description : Poly(A)-binding protein C-terminal interacting protein 6

Gene families : OG_02_0009383 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000021273
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_22

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009414	response to water deprivation	IEA	AHRD
BP	GO:0009415	response to water	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009644	response to high light intensity	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010196	nonphotochemical quenching	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042651	thylakoid membrane	IEA	AHRD
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1990066	energy quenching	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001666	response to hypoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:0001894	tissue homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0001959	regulation of cytokine-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0001961	positive regulation of cytokine-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0003712	transcription coregulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003713	transcription coactivator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004021	L-alanine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004737	pyruvate decarboxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005154	epidermal growth factor receptor binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005759	mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
CC	GO:0005788	endoplasmic reticulum lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0005863	striated muscle myosin thick filament	IEP	Predict GO terms from Neighborhoods
BP	GO:0006103	2-oxoglutarate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006111	regulation of gluconeogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006522	alanine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006523	alanine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006524	alanine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006528	asparagine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006529	asparagine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006536	glutamate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006537	glutamate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006541	glutamine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007006	mitochondrial membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007007	inner mitochondrial membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007014	actin ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0007548	sex differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008453	alanine-glyoxylate transaminase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008483	transaminase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009078	pyruvate family amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009079	pyruvate family amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009080	pyruvate family amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009523	photosystem II	IEP	Predict GO terms from Neighborhoods
BP	GO:0009767	photosynthetic electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	Predict GO terms from Neighborhoods
BP	GO:0009853	photorespiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0009968	negative regulation of signal transduction	IEP	Predict GO terms from Neighborhoods
MF	GO:0010242	oxygen evolving activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010648	negative regulation of cell communication	IEP	Predict GO terms from Neighborhoods
BP	GO:0010676	positive regulation of cellular carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010803	regulation of tumor necrosis factor-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010906	regulation of glucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010907	positive regulation of glucose metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016168	chlorophyll binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Predict GO terms from Neighborhoods
BP	GO:0018298	obsolete protein-chromophore linkage	IEP	Predict GO terms from Neighborhoods
BP	GO:0019221	cytokine-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0023057	negative regulation of signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0030007	cellular potassium ion homeostasis	IEP	Predict GO terms from Neighborhoods
CC	GO:0030015	CCR4-NOT core complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0030047	actin modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0030374	nuclear receptor coactivator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0030957	Tat protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0031369	translation initiation factor binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031974	membrane-enclosed lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032642	regulation of chemokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032722	positive regulation of chemokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032869	cellular response to insulin stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0032897	negative regulation of viral transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
CC	GO:0032982	myosin filament	IEP	Predict GO terms from Neighborhoods
BP	GO:0033135	regulation of peptidyl-serine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033138	positive regulation of peptidyl-serine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033143	regulation of intracellular steroid hormone receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0033144	negative regulation of intracellular steroid hormone receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0033146	regulation of intracellular estrogen receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0033147	negative regulation of intracellular estrogen receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0033620	Mei2 nuclear dot complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034059	response to anoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0034612	response to tumor necrosis factor	IEP	Predict GO terms from Neighborhoods
BP	GO:0034975	protein folding in endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0036293	response to decreased oxygen levels	IEP	Predict GO terms from Neighborhoods
CC	GO:0036379	myofilament	IEP	Predict GO terms from Neighborhoods
BP	GO:0042058	regulation of epidermal growth factor receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0042407	cristae formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042851	L-alanine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042853	L-alanine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043122	regulation of I-kappaB kinase/NF-kappaB signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0043233	organelle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044248	cellular catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045444	fat cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045666	positive regulation of neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045722	positive regulation of gluconeogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045742	positive regulation of epidermal growth factor receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0045913	positive regulation of carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046716	muscle cell cellular homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0046782	regulation of viral transcription	IEP	Predict GO terms from Neighborhoods
MF	GO:0047635	alanine-oxo-acid transaminase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047958	glycine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048145	regulation of fibroblast proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048147	negative regulation of fibroblast proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048525	negative regulation of viral process	IEP	Predict GO terms from Neighborhoods
MF	GO:0050997	quaternary ammonium group binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051092	positive regulation of NF-kappaB transcription factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051147	regulation of muscle cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051149	positive regulation of muscle cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051153	regulation of striated muscle cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051155	positive regulation of striated muscle cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060759	regulation of response to cytokine stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0060760	positive regulation of response to cytokine stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0061564	axon development	IEP	Predict GO terms from Neighborhoods
CC	GO:0070013	intracellular organelle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0070482	response to oxygen levels	IEP	Predict GO terms from Neighborhoods
MF	GO:0070851	growth factor receptor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070981	L-asparagine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070982	L-asparagine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071375	cellular response to peptide hormone stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0097054	L-glutamate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0098659	inorganic cation import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1901184	regulation of ERBB signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1901186	positive regulation of ERBB signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902172	regulation of keratinocyte apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902173	negative regulation of keratinocyte apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902229	regulation of intrinsic apoptotic signaling pathway in response to DNA damage	IEP	Predict GO terms from Neighborhoods
BP	GO:1902230	negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage	IEP	Predict GO terms from Neighborhoods
BP	GO:1903265	positive regulation of tumor necrosis factor-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1903881	regulation of interleukin-17-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1903883	positive regulation of interleukin-17-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1903884	regulation of chemokine (C-C motif) ligand 20 production	IEP	Predict GO terms from Neighborhoods
BP	GO:1903886	positive regulation of chemokine (C-C motif) ligand 20 production	IEP	Predict GO terms from Neighborhoods
BP	GO:1904035	regulation of epithelial cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904036	negative regulation of epithelial cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1990573	potassium ion import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:2001021	negative regulation of response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:2001243	negative regulation of intrinsic apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR009818	Ataxin-2_C	43	56

External Links

No external refs found!

SOLTUB.AGRIA.G00000021273

Expression Profile

Co-expression Networks

Functional Annotation