SOLTUB.AGRIA.G00000021714

Description : 60S ribosomal export protein NMD3

Gene families : OG_02_0020006 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000021714
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_226

Type	GO Term	Name	Evidence	Source
BP	GO:0000054	ribosomal subunit export from nucleus	None	Extended
BP	GO:0000055	ribosomal large subunit export from nucleus	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006810	transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019843	rRNA binding	None	Extended
MF	GO:0030674	protein-macromolecule adaptor activity	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031503	protein-containing complex localization	None	Extended
BP	GO:0032092	positive regulation of protein binding	IEA	AHRD
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	None	Extended
BP	GO:0033750	ribosome localization	None	Extended
MF	GO:0043021	ribonucleoprotein complex binding	None	Extended
MF	GO:0043023	ribosomal large subunit binding	IEA	AHRD
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043393	regulation of protein binding	None	Extended
BP	GO:0044093	positive regulation of molecular function	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051098	regulation of binding	None	Extended
BP	GO:0051099	positive regulation of binding	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051656	establishment of organelle localization	None	Extended
MF	GO:0060090	molecular adaptor activity	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
MF	GO:0070180	large ribosomal subunit rRNA binding	IEA	AHRD
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1900180	regulation of protein localization to nucleus	None	Extended
BP	GO:1900182	positive regulation of protein localization to nucleus	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEA	AHRD
BP	GO:1903829	positive regulation of protein localization	None	Extended
BP	GO:1904749	regulation of protein localization to nucleolus	None	Extended
BP	GO:1904751	positive regulation of protein localization to nucleolus	IEA	AHRD
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000176	nuclear exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
CC	GO:0000178	exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000460	maturation of 5.8S rRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000469	cleavage involved in rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000470	maturation of LSU-rRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000480	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0001570	vasculogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0001676	long-chain fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0001825	blastocyst formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001836	release of cytochrome c from mitochondria	IEP	Predict GO terms from Neighborhoods
BP	GO:0002183	cytoplasmic translational initiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003725	double-stranded RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003727	single-stranded RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004521	endoribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004540	ribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004725	protein tyrosine phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005047	signal recognition particle binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005048	signal sequence binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005126	cytokine receptor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005134	interleukin-2 receptor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005656	nuclear pre-replicative complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005682	U5 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	Predict GO terms from Neighborhoods
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006334	nucleosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007000	nucleolus organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007006	mitochondrial membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007029	endoplasmic reticulum organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007272	ensheathment of neurons	IEP	Predict GO terms from Neighborhoods
BP	GO:0007286	spermatid development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007519	skeletal muscle tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007601	visual perception	IEP	Predict GO terms from Neighborhoods
MF	GO:0008312	7S RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008320	protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008366	axon ensheathment	IEP	Predict GO terms from Neighborhoods
BP	GO:0008589	regulation of smoothened signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0008637	apoptotic mitochondrial changes	IEP	Predict GO terms from Neighborhoods
CC	GO:0009510	plasmodesmatal desmotubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0009954	proximal/distal pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010001	glial cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010267	ta-siRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0010445	nuclear dicing body	IEP	Predict GO terms from Neighborhoods
BP	GO:0010589	leaf proximal/distal pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010656	negative regulation of muscle cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010660	regulation of muscle cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010662	regulation of striated muscle cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010664	negative regulation of striated muscle cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010665	regulation of cardiac muscle cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010667	negative regulation of cardiac muscle cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010950	positive regulation of endopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010952	positive regulation of peptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010976	positive regulation of neuron projection development	IEP	Predict GO terms from Neighborhoods
BP	GO:0014013	regulation of gliogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0014015	positive regulation of gliogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0014028	notochord formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0014866	skeletal myofibril assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016444	somatic cell DNA recombination	IEP	Predict GO terms from Neighborhoods
CC	GO:0016604	nuclear body	IEP	Predict GO terms from Neighborhoods
CC	GO:0016607	nuclear speck	IEP	Predict GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
BP	GO:0030154	cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030174	regulation of DNA-templated DNA replication initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030239	myofibril assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0030687	preribosome, large subunit precursor	IEP	Predict GO terms from Neighborhoods
CC	GO:0030688	preribosome, small subunit precursor	IEP	Predict GO terms from Neighborhoods
MF	GO:0030911	TPR domain binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030943	mitochondrion targeting sequence binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031017	exocrine pancreas development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031032	actomyosin structure organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031054	pre-miRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035195	miRNA-mediated gene silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0035196	miRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0035198	miRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0035279	miRNA-mediated gene silencing by mRNA destabilization	IEP	Predict GO terms from Neighborhoods
CC	GO:0036387	pre-replicative complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0042273	ribosomal large subunit biogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042552	myelination	IEP	Predict GO terms from Neighborhoods
BP	GO:0042759	long-chain fatty acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043487	regulation of RNA stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0043488	regulation of mRNA stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0044665	MLL1/2 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045292	mRNA cis splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0045685	regulation of glial cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045687	positive regulation of glial cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046902	regulation of mitochondrial membrane permeability	IEP	Predict GO terms from Neighborhoods
BP	GO:0048255	mRNA stabilization	IEP	Predict GO terms from Neighborhoods
CC	GO:0048500	signal recognition particle	IEP	Predict GO terms from Neighborhoods
BP	GO:0048513	animal organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048577	negative regulation of short-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0048709	oligodendrocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048713	regulation of oligodendrocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048714	positive regulation of oligodendrocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050779	RNA destabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0050790	regulation of catalytic activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050953	sensory perception of light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051569	regulation of histone H3-K4 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060034	notochord cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060537	muscle tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060966	regulation of gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0061013	regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061157	mRNA destabilization	IEP	Predict GO terms from Neighborhoods
MF	GO:0061980	regulatory RNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0070545	PeBoW complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0070851	growth factor receptor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070935	3'-UTR-mediated mRNA stabilization	IEP	Predict GO terms from Neighborhoods
CC	GO:0071007	U2-type catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071013	catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071014	post-mRNA release spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071458	integral component of cytoplasmic side of endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0071786	endoplasmic reticulum tubular network organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090069	regulation of ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	Predict GO terms from Neighborhoods
BP	GO:0090559	regulation of membrane permeability	IEP	Predict GO terms from Neighborhoods
CC	GO:0097344	Rix1 complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0140318	protein transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:1900259	regulation of RNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900260	negative regulation of RNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901535	regulation of DNA demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902183	regulation of shoot apical meristem development	IEP	Predict GO terms from Neighborhoods
BP	GO:1902184	negative regulation of shoot apical meristem development	IEP	Predict GO terms from Neighborhoods
BP	GO:1902373	negative regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1902562	H4 histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1903311	regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1905354	exoribonuclease complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000232	regulation of rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:2001056	positive regulation of cysteine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007064	Nmd3_N	19	248

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SOLTUB.AGRIA.G00000021714

Expression Profile

Co-expression Networks

Functional Annotation