SOLTUB.AGRIA.G00000022647


Description : PHD and RING finger domain-containing protein 1


Gene families : OG_02_0015349 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000022647
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_245


Type GO Term Name Evidence Source
BP GO:0000209 protein polyubiquitination IEA AHRD
MF GO:0005515 protein binding IEA AHRD
MF GO:0005521 lamin binding IEA AHRD
CC GO:0005634 nucleus IEA AHRD
CC GO:0005652 nuclear lamina IEA AHRD
CC GO:0005694 chromosome IEA AHRD
CC GO:0005700 polytene chromosome IEA AHRD
CC GO:0005778 peroxisomal membrane IEA AHRD
BP GO:0006325 chromatin organization IEA AHRD
BP GO:0006355 regulation of DNA-templated transcription IEA AHRD
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA AHRD
BP GO:0006997 nucleus organization IEA AHRD
BP GO:0007060 male meiosis chromosome segregation IEA AHRD
MF GO:0008270 zinc ion binding IEA AHRD
BP GO:0010032 meiotic chromosome condensation IEA AHRD
BP GO:0016558 protein import into peroxisome matrix IEA AHRD
MF GO:0016740 transferase activity IEA AHRD
BP GO:0016925 protein sumoylation IEA AHRD
MF GO:0019789 SUMO transferase activity IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
BP GO:0051299 centrosome separation IEA AHRD
MF GO:0061630 ubiquitin protein ligase activity IEA AHRD
BP GO:0071763 nuclear membrane organization IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000018 regulation of DNA recombination IEP Predict GO terms from Neighborhoods
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
BP GO:0001558 regulation of cell growth IEP Predict GO terms from Neighborhoods
BP GO:0001819 positive regulation of cytokine production IEP Predict GO terms from Neighborhoods
BP GO:0001894 tissue homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0001959 regulation of cytokine-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0001961 positive regulation of cytokine-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0002637 regulation of immunoglobulin production IEP Predict GO terms from Neighborhoods
BP GO:0002639 positive regulation of immunoglobulin production IEP Predict GO terms from Neighborhoods
BP GO:0002694 regulation of leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0002696 positive regulation of leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0002697 regulation of immune effector process IEP Predict GO terms from Neighborhoods
BP GO:0002699 positive regulation of immune effector process IEP Predict GO terms from Neighborhoods
BP GO:0002700 regulation of production of molecular mediator of immune response IEP Predict GO terms from Neighborhoods
BP GO:0002702 positive regulation of production of molecular mediator of immune response IEP Predict GO terms from Neighborhoods
BP GO:0002703 regulation of leukocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002705 positive regulation of leukocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002706 regulation of lymphocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002708 positive regulation of lymphocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002712 regulation of B cell mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002714 positive regulation of B cell mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002819 regulation of adaptive immune response IEP Predict GO terms from Neighborhoods
BP GO:0002821 positive regulation of adaptive immune response IEP Predict GO terms from Neighborhoods
BP GO:0002822 regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains IEP Predict GO terms from Neighborhoods
BP GO:0002824 positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains IEP Predict GO terms from Neighborhoods
BP GO:0002889 regulation of immunoglobulin mediated immune response IEP Predict GO terms from Neighborhoods
BP GO:0002891 positive regulation of immunoglobulin mediated immune response IEP Predict GO terms from Neighborhoods
MF GO:0003712 transcription coregulator activity IEP Predict GO terms from Neighborhoods
CC GO:0005680 anaphase-promoting complex IEP Predict GO terms from Neighborhoods
CC GO:0005863 striated muscle myosin thick filament IEP Predict GO terms from Neighborhoods
BP GO:0006282 regulation of DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0007014 actin ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0007015 actin filament organization IEP Predict GO terms from Neighborhoods
BP GO:0007162 negative regulation of cell adhesion IEP Predict GO terms from Neighborhoods
MF GO:0008134 transcription factor binding IEP Predict GO terms from Neighborhoods
MF GO:0008432 JUN kinase binding IEP Predict GO terms from Neighborhoods
BP GO:0009411 response to UV IEP Predict GO terms from Neighborhoods
BP GO:0009794 regulation of mitotic cell cycle, embryonic IEP Predict GO terms from Neighborhoods
BP GO:0009891 positive regulation of biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009893 positive regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009894 regulation of catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009896 positive regulation of catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010192 mucilage biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010569 regulation of double-strand break repair via homologous recombination IEP Predict GO terms from Neighborhoods
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010628 positive regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010717 regulation of epithelial to mesenchymal transition IEP Predict GO terms from Neighborhoods
BP GO:0010719 negative regulation of epithelial to mesenchymal transition IEP Predict GO terms from Neighborhoods
BP GO:0010803 regulation of tumor necrosis factor-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010944 negative regulation of transcription by competitive promoter binding IEP Predict GO terms from Neighborhoods
CC GO:0016035 zeta DNA polymerase complex IEP Predict GO terms from Neighborhoods
CC GO:0016592 mediator complex IEP Predict GO terms from Neighborhoods
MF GO:0017022 myosin binding IEP Predict GO terms from Neighborhoods
BP GO:0022407 regulation of cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0022408 negative regulation of cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0030036 actin cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0030047 actin modification IEP Predict GO terms from Neighborhoods
BP GO:0030162 regulation of proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0030178 negative regulation of Wnt signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0030957 Tat protein binding IEP Predict GO terms from Neighborhoods
BP GO:0031175 neuron projection development IEP Predict GO terms from Neighborhoods
BP GO:0031325 positive regulation of cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0031369 translation initiation factor binding IEP Predict GO terms from Neighborhoods
BP GO:0031397 negative regulation of protein ubiquitination IEP Predict GO terms from Neighborhoods
MF GO:0032182 ubiquitin-like protein binding IEP Predict GO terms from Neighborhoods
BP GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032642 regulation of chemokine production IEP Predict GO terms from Neighborhoods
BP GO:0032722 positive regulation of chemokine production IEP Predict GO terms from Neighborhoods
BP GO:0032897 negative regulation of viral transcription IEP Predict GO terms from Neighborhoods
CC GO:0032982 myosin filament IEP Predict GO terms from Neighborhoods
BP GO:0033135 regulation of peptidyl-serine phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0033138 positive regulation of peptidyl-serine phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0034612 response to tumor necrosis factor IEP Predict GO terms from Neighborhoods
BP GO:0036302 atrioventricular canal development IEP Predict GO terms from Neighborhoods
CC GO:0036379 myofilament IEP Predict GO terms from Neighborhoods
BP GO:0042176 regulation of protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042177 negative regulation of protein catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0042575 DNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0042770 signal transduction in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:0042772 DNA damage response, signal transduction resulting in transcription IEP Predict GO terms from Neighborhoods
BP GO:0043122 regulation of I-kappaB kinase/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
MF GO:0043130 ubiquitin binding IEP Predict GO terms from Neighborhoods
BP GO:0043392 negative regulation of DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0043393 regulation of protein binding IEP Predict GO terms from Neighborhoods
BP GO:0043433 negative regulation of DNA-binding transcription factor activity IEP Predict GO terms from Neighborhoods
BP GO:0045191 regulation of isotype switching IEP Predict GO terms from Neighborhoods
BP GO:0045444 fat cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045595 regulation of cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045664 regulation of neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045666 positive regulation of neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045732 positive regulation of protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045738 negative regulation of DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0045739 positive regulation of DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0045830 positive regulation of isotype switching IEP Predict GO terms from Neighborhoods
BP GO:0045862 positive regulation of proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0045893 positive regulation of DNA-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:0045910 negative regulation of DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0045911 positive regulation of DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046716 muscle cell cellular homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0046782 regulation of viral transcription IEP Predict GO terms from Neighborhoods
BP GO:0048145 regulation of fibroblast proliferation IEP Predict GO terms from Neighborhoods
BP GO:0048147 negative regulation of fibroblast proliferation IEP Predict GO terms from Neighborhoods
BP GO:0048354 mucilage biosynthetic process involved in seed coat development IEP Predict GO terms from Neighborhoods
BP GO:0048525 negative regulation of viral process IEP Predict GO terms from Neighborhoods
BP GO:0050769 positive regulation of neurogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050792 regulation of viral process IEP Predict GO terms from Neighborhoods
BP GO:0050864 regulation of B cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050865 regulation of cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050867 positive regulation of cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050871 positive regulation of B cell activation IEP Predict GO terms from Neighborhoods
BP GO:0051053 negative regulation of DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051090 regulation of DNA-binding transcription factor activity IEP Predict GO terms from Neighborhoods
BP GO:0051091 positive regulation of DNA-binding transcription factor activity IEP Predict GO terms from Neighborhoods
BP GO:0051092 positive regulation of NF-kappaB transcription factor activity IEP Predict GO terms from Neighborhoods
BP GO:0051100 negative regulation of binding IEP Predict GO terms from Neighborhoods
BP GO:0051101 regulation of DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0051147 regulation of muscle cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0051149 positive regulation of muscle cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0051153 regulation of striated muscle cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0051155 positive regulation of striated muscle cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051240 positive regulation of multicellular organismal process IEP Predict GO terms from Neighborhoods
BP GO:0051246 regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051247 positive regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051249 regulation of lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0051251 positive regulation of lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0051254 positive regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051348 negative regulation of transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051438 regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051444 negative regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051726 regulation of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051962 positive regulation of nervous system development IEP Predict GO terms from Neighborhoods
BP GO:0060249 anatomical structure homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0060759 regulation of response to cytokine stimulus IEP Predict GO terms from Neighborhoods
BP GO:0060760 positive regulation of response to cytokine stimulus IEP Predict GO terms from Neighborhoods
BP GO:0060828 regulation of canonical Wnt signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0061564 axon development IEP Predict GO terms from Neighborhoods
MF GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding IEP Predict GO terms from Neighborhoods
BP GO:0070936 protein K48-linked ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0080135 regulation of cellular response to stress IEP Predict GO terms from Neighborhoods
BP GO:0090090 negative regulation of canonical Wnt signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0140297 DNA-binding transcription factor binding IEP Predict GO terms from Neighborhoods
BP GO:1902172 regulation of keratinocyte apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:1902173 negative regulation of keratinocyte apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:1902229 regulation of intrinsic apoptotic signaling pathway in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:1902230 negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903265 positive regulation of tumor necrosis factor-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1903321 negative regulation of protein modification by small protein conjugation or removal IEP Predict GO terms from Neighborhoods
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:1903881 regulation of interleukin-17-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1903883 positive regulation of interleukin-17-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1903884 regulation of chemokine (C-C motif) ligand 20 production IEP Predict GO terms from Neighborhoods
BP GO:1903886 positive regulation of chemokine (C-C motif) ligand 20 production IEP Predict GO terms from Neighborhoods
BP GO:1904035 regulation of epithelial cell apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:1904036 negative regulation of epithelial cell apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:1904666 regulation of ubiquitin protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:1904667 negative regulation of ubiquitin protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:1905072 cardiac jelly development IEP Predict GO terms from Neighborhoods
BP GO:2000042 negative regulation of double-strand break repair via homologous recombination IEP Predict GO terms from Neighborhoods
BP GO:2000047 regulation of cell-cell adhesion mediated by cadherin IEP Predict GO terms from Neighborhoods
BP GO:2000048 negative regulation of cell-cell adhesion mediated by cadherin IEP Predict GO terms from Neighborhoods
BP GO:2000060 positive regulation of ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000677 regulation of transcription regulatory region DNA binding IEP Predict GO terms from Neighborhoods
BP GO:2000678 negative regulation of transcription regulatory region DNA binding IEP Predict GO terms from Neighborhoods
BP GO:2000779 regulation of double-strand break repair IEP Predict GO terms from Neighborhoods
BP GO:2000780 negative regulation of double-strand break repair IEP Predict GO terms from Neighborhoods
BP GO:2000781 positive regulation of double-strand break repair IEP Predict GO terms from Neighborhoods
BP GO:2001020 regulation of response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:2001021 negative regulation of response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:2001022 positive regulation of response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:2001032 regulation of double-strand break repair via nonhomologous end joining IEP Predict GO terms from Neighborhoods
BP GO:2001034 positive regulation of double-strand break repair via nonhomologous end joining IEP Predict GO terms from Neighborhoods
BP GO:2001234 negative regulation of apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001242 regulation of intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001243 negative regulation of intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 146 190
IPR011011 Znf_FYVE_PHD 137 191
No external refs found!