SOLTUB.AGRIA.G00000023030

Description : Ubiquitin carboxyl-terminal hydrolase, putative

Gene families : OG_02_0015424 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000023030
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_26

Type	GO Term	Name	Evidence	Source
BP	GO:0000244	spliceosomal tri-snRNP complex assembly	IEA	AHRD
CC	GO:0000323	lytic vacuole	None	Extended
BP	GO:0000387	spliceosomal snRNP assembly	None	Extended
MF	GO:0001664	G protein-coupled receptor binding	None	Extended
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002683	negative regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
BP	GO:0002832	negative regulation of response to biotic stimulus	None	Extended
BP	GO:0002833	positive regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004197	cysteine-type endopeptidase activity	IEA	AHRD
MF	GO:0004843	cysteine-type deubiquitinase activity	IEA	AHRD
MF	GO:0005102	signaling receptor binding	None	Extended
MF	GO:0005126	cytokine receptor binding	None	Extended
MF	GO:0005160	transforming growth factor beta receptor binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005764	lysosome	IEA	AHRD
CC	GO:0005773	vacuole	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006468	protein phosphorylation	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	AHRD
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007166	cell surface receptor signaling pathway	None	Extended
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	None	Extended
BP	GO:0007178	transmembrane receptor protein serine/threonine kinase signaling pathway	None	Extended
BP	GO:0007179	transforming growth factor beta receptor signaling pathway	IEA	AHRD
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009967	positive regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010647	positive regulation of cell communication	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016578	histone deubiquitination	None	Extended
BP	GO:0016579	protein deubiquitination	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023056	positive regulation of signaling	None	Extended
BP	GO:0030509	BMP signaling pathway	IEA	AHRD
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	None	Extended
BP	GO:0031396	regulation of protein ubiquitination	None	Extended
BP	GO:0031397	negative regulation of protein ubiquitination	IEA	AHRD
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031400	negative regulation of protein modification process	None	Extended
BP	GO:0031647	regulation of protein stability	IEA	AHRD
MF	GO:0031685	adenosine receptor binding	IEA	AHRD
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032102	negative regulation of response to external stimulus	None	Extended
BP	GO:0032103	positive regulation of response to external stimulus	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0034394	protein localization to cell surface	IEA	AHRD
BP	GO:0035520	monoubiquitinated protein deubiquitination	IEA	AHRD
BP	GO:0035616	histone H2B conserved C-terminal lysine deubiquitination	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0039531	regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway	None	Extended
BP	GO:0039535	regulation of RIG-I signaling pathway	None	Extended
MF	GO:0042393	histone binding	None	Extended
MF	GO:0042802	identical protein binding	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045824	negative regulation of innate immune response	None	Extended
MF	GO:0046332	SMAD binding	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050777	negative regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060389	pathway-restricted SMAD protein phosphorylation	IEA	AHRD
MF	GO:0061649	ubiquitin modification-dependent histone binding	IEA	AHRD
BP	GO:0062207	regulation of pattern recognition receptor signaling pathway	None	Extended
BP	GO:0062208	positive regulation of pattern recognition receptor signaling pathway	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140030	modification-dependent protein binding	None	Extended
MF	GO:0140035	ubiquitination-like modification-dependent protein binding	None	Extended
MF	GO:0140036	ubiquitin-dependent protein binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1900150	regulation of defense response to fungus	None	Extended
BP	GO:1900246	positive regulation of RIG-I signaling pathway	IEA	AHRD
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1902531	regulation of intracellular signal transduction	None	Extended
BP	GO:1902533	positive regulation of intracellular signal transduction	None	Extended
BP	GO:1903320	regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1903321	negative regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1905034	regulation of antifungal innate immune response	None	Extended
BP	GO:1905035	negative regulation of antifungal innate immune response	IEA	AHRD
BP	GO:1990167	protein K27-linked deubiquitination	IEA	AHRD
MF	GO:1990380	Lys48-specific deubiquitinase activity	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
BP	GO:0000209	protein polyubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	IEP	Predict GO terms from Neighborhoods
CC	GO:0000329	fungal-type vacuole membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0001562	response to protozoan	IEP	Predict GO terms from Neighborhoods
BP	GO:0001817	regulation of cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0001819	positive regulation of cytokine production	IEP	Predict GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004222	metalloendopeptidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005745	m-AAA complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005757	mitochondrial permeability transition pore complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006401	RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006402	mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006816	calcium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006851	mitochondrial calcium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006874	cellular calcium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006875	cellular metal ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007005	mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007006	mitochondrial membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007007	inner mitochondrial membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0007272	ensheathment of neurons	IEP	Predict GO terms from Neighborhoods
BP	GO:0007409	axonogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0008053	mitochondrial fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0008088	axo-dendritic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0008089	anterograde axonal transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008366	axon ensheathment	IEP	Predict GO terms from Neighborhoods
BP	GO:0009617	response to bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010468	regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010628	positive regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010970	transport along microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0016485	protein processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0016540	protein autoprocessing	IEP	Predict GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0018995	host cellular component	IEP	Predict GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0019002	GMP binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0020005	symbiont-containing vacuole membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030015	CCR4-NOT core complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0030030	cell projection organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030705	cytoskeleton-dependent intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032784	regulation of DNA-templated transcription elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0032989	cellular component morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0032990	cell part morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0033619	membrane protein proteolysis	IEP	Predict GO terms from Neighborhoods
CC	GO:0033643	host cell part	IEP	Predict GO terms from Neighborhoods
BP	GO:0034097	response to cytokine	IEP	Predict GO terms from Neighborhoods
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0034341	response to interferon-gamma	IEP	Predict GO terms from Neighborhoods
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034982	mitochondrial protein processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0035456	response to interferon-beta	IEP	Predict GO terms from Neighborhoods
BP	GO:0035458	cellular response to interferon-beta	IEP	Predict GO terms from Neighborhoods
BP	GO:0035794	positive regulation of mitochondrial membrane permeability	IEP	Predict GO terms from Neighborhoods
BP	GO:0036444	calcium import into the mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0042407	cristae formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042552	myelination	IEP	Predict GO terms from Neighborhoods
BP	GO:0042742	defense response to bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:0042832	defense response to protozoan	IEP	Predict GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0044406	adhesion of symbiont to host	IEP	Predict GO terms from Neighborhoods
BP	GO:0046902	regulation of mitochondrial membrane permeability	IEP	Predict GO terms from Neighborhoods
CC	GO:0046930	pore complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0048284	organelle fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0048812	neuron projection morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048858	cell projection morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050829	defense response to Gram-negative bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:0050830	defense response to Gram-positive bacterium	IEP	Predict GO terms from Neighborhoods
MF	GO:0051082	unfolded protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051239	regulation of multicellular organismal process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051560	mitochondrial calcium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0051604	protein maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051701	biological process involved in interaction with host	IEP	Predict GO terms from Neighborhoods
BP	GO:0055074	calcium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060004	reflex	IEP	Predict GO terms from Neighborhoods
BP	GO:0060013	righting reflex	IEP	Predict GO terms from Neighborhoods
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070588	calcium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0071345	cellular response to cytokine stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071346	cellular response to interferon-gamma	IEP	Predict GO terms from Neighborhoods
BP	GO:0072503	cellular divalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0072507	divalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090559	regulation of membrane permeability	IEP	Predict GO terms from Neighborhoods
CC	GO:0097002	mitochondrial inner boundary membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0098798	mitochondrial protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098852	lytic vacuole membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098930	axonal transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0099111	microtubule-based transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0110037	regulation of nematode male tail tip morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0110039	positive regulation of nematode male tail tip morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0110154	RNA decapping	IEP	Predict GO terms from Neighborhoods
BP	GO:0110156	methylguanosine-cap decapping	IEP	Predict GO terms from Neighborhoods
BP	GO:0120039	plasma membrane bounded cell projection morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1902686	mitochondrial outer membrane permeabilization involved in programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:1903076	regulation of protein localization to plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1904375	regulation of protein localization to cell periphery	IEP	Predict GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1905475	regulation of protein localization to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1905710	positive regulation of membrane permeability	IEP	Predict GO terms from Neighborhoods
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001394	Peptidase_C19_UCH	278	869
IPR038765	Papain-like_cys_pep_sf	276	872

External Links

No external refs found!

SOLTUB.AGRIA.G00000023030

Expression Profile

Co-expression Networks

Functional Annotation