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  5. SOLTUB.AGRIA.G00000023560

SOLTUB.AGRIA.G00000023560


Description : rRNA-processing protein


Gene families : OG_02_0020242 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000023560
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_256


Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
BP GO:0006364 rRNA processing IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predict GO terms from Neighborhoods
MF GO:0000900 mRNA regulatory element binding translation repressor activity IEP Predict GO terms from Neighborhoods
BP GO:0000967 rRNA 5'-end processing IEP Predict GO terms from Neighborhoods
MF GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IEP Predict GO terms from Neighborhoods
MF GO:0001671 ATPase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0002181 cytoplasmic translation IEP Predict GO terms from Neighborhoods
BP GO:0002227 innate immune response in mucosa IEP Predict GO terms from Neighborhoods
BP GO:0002244 hematopoietic progenitor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0002251 organ or tissue specific immune response IEP Predict GO terms from Neighborhoods
BP GO:0002385 mucosal immune response IEP Predict GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0003690 double-stranded DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003714 transcription corepressor activity IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003735 structural constituent of ribosome IEP Predict GO terms from Neighborhoods
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0005126 cytokine receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0005160 transforming growth factor beta receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0005527 macrolide binding IEP Predict GO terms from Neighborhoods
MF GO:0005528 FK506 binding IEP Predict GO terms from Neighborhoods
CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
BP GO:0006260 DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006261 DNA-templated DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006457 protein folding IEP Predict GO terms from Neighborhoods
BP GO:0006463 steroid hormone receptor complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0006613 cotranslational protein targeting to membrane IEP Predict GO terms from Neighborhoods
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predict GO terms from Neighborhoods
BP GO:0006620 post-translational protein targeting to endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
BP GO:0006825 copper ion transport IEP Predict GO terms from Neighborhoods
BP GO:0006959 humoral immune response IEP Predict GO terms from Neighborhoods
BP GO:0007548 sex differentiation IEP Predict GO terms from Neighborhoods
BP GO:0007566 embryo implantation IEP Predict GO terms from Neighborhoods
CC GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex IEP Predict GO terms from Neighborhoods
BP GO:0009584 detection of visible light IEP Predict GO terms from Neighborhoods
BP GO:0009757 hexose mediated signaling IEP Predict GO terms from Neighborhoods
BP GO:0009910 negative regulation of flower development IEP Predict GO terms from Neighborhoods
BP GO:0009913 epidermal cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0010077 maintenance of inflorescence meristem identity IEP Predict GO terms from Neighborhoods
BP GO:0010090 trichome morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010094 specification of carpel identity IEP Predict GO terms from Neighborhoods
BP GO:0010151 chloroplast elongation IEP Predict GO terms from Neighborhoods
BP GO:0010219 regulation of vernalization response IEP Predict GO terms from Neighborhoods
BP GO:0010220 positive regulation of vernalization response IEP Predict GO terms from Neighborhoods
BP GO:0010255 glucose mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010440 stomatal lineage progression IEP Predict GO terms from Neighborhoods
BP GO:0010975 regulation of neuron projection development IEP Predict GO terms from Neighborhoods
BP GO:0010977 negative regulation of neuron projection development IEP Predict GO terms from Neighborhoods
CC GO:0016027 inaD signaling complex IEP Predict GO terms from Neighborhoods
BP GO:0019730 antimicrobial humoral response IEP Predict GO terms from Neighborhoods
BP GO:0019731 antibacterial humoral response IEP Predict GO terms from Neighborhoods
BP GO:0021510 spinal cord development IEP Predict GO terms from Neighborhoods
BP GO:0021954 central nervous system neuron development IEP Predict GO terms from Neighborhoods
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0030154 cell differentiation IEP Predict GO terms from Neighborhoods
CC GO:0030289 protein phosphatase 4 complex IEP Predict GO terms from Neighborhoods
BP GO:0030307 positive regulation of cell growth IEP Predict GO terms from Neighborhoods
BP GO:0030518 intracellular steroid hormone receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0030521 androgen receptor signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0030544 Hsp70 protein binding IEP Predict GO terms from Neighborhoods
MF GO:0030674 protein-macromolecule adaptor activity IEP Predict GO terms from Neighborhoods
BP GO:0030850 prostate gland development IEP Predict GO terms from Neighborhoods
BP GO:0030855 epithelial cell differentiation IEP Predict GO terms from Neighborhoods
MF GO:0031072 heat shock protein binding IEP Predict GO terms from Neighborhoods
BP GO:0031110 regulation of microtubule polymerization or depolymerization IEP Predict GO terms from Neighborhoods
BP GO:0031111 negative regulation of microtubule polymerization or depolymerization IEP Predict GO terms from Neighborhoods
BP GO:0031113 regulation of microtubule polymerization IEP Predict GO terms from Neighborhoods
BP GO:0031115 negative regulation of microtubule polymerization IEP Predict GO terms from Neighborhoods
CC GO:0031207 Sec62/Sec63 complex IEP Predict GO terms from Neighborhoods
BP GO:0031285 regulation of sorocarp stalk cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0031287 positive regulation of sorocarp stalk cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0031344 regulation of cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0031929 TOR signaling IEP Predict GO terms from Neighborhoods
BP GO:0032106 positive regulation of response to extracellular stimulus IEP Predict GO terms from Neighborhoods
BP GO:0032109 positive regulation of response to nutrient levels IEP Predict GO terms from Neighborhoods
BP GO:0032272 negative regulation of protein polymerization IEP Predict GO terms from Neighborhoods
MF GO:0032767 copper-dependent protein binding IEP Predict GO terms from Neighborhoods
BP GO:0032781 positive regulation of ATP-dependent activity IEP Predict GO terms from Neighborhoods
BP GO:0034471 ncRNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0034605 cellular response to heat IEP Predict GO terms from Neighborhoods
MF GO:0034713 type I transforming growth factor beta receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0035259 nuclear glucocorticoid receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0036260 RNA capping IEP Predict GO terms from Neighborhoods
BP GO:0040034 regulation of development, heterochronic IEP Predict GO terms from Neighborhoods
BP GO:0042023 DNA endoreduplication IEP Predict GO terms from Neighborhoods
BP GO:0042254 ribosome biogenesis IEP Predict GO terms from Neighborhoods
CC GO:0043025 neuronal cell body IEP Predict GO terms from Neighborhoods
CC GO:0043197 dendritic spine IEP Predict GO terms from Neighborhoods
BP GO:0043610 regulation of carbohydrate utilization IEP Predict GO terms from Neighborhoods
CC GO:0044295 axonal growth cone IEP Predict GO terms from Neighborhoods
CC GO:0044297 cell body IEP Predict GO terms from Neighborhoods
CC GO:0044309 neuron spine IEP Predict GO terms from Neighborhoods
CC GO:0044391 ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0044786 cell cycle DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0045047 protein targeting to ER IEP Predict GO terms from Neighborhoods
CC GO:0045171 intercellular bridge IEP Predict GO terms from Neighborhoods
BP GO:0046661 male sex differentiation IEP Predict GO terms from Neighborhoods
BP GO:0046719 regulation by virus of viral protein levels in host cell IEP Predict GO terms from Neighborhoods
MF GO:0048156 tau protein binding IEP Predict GO terms from Neighborhoods
BP GO:0048449 floral organ formation IEP Predict GO terms from Neighborhoods
BP GO:0048455 stamen formation IEP Predict GO terms from Neighborhoods
BP GO:0048459 floral whorl structural organization IEP Predict GO terms from Neighborhoods
BP GO:0048506 regulation of timing of meristematic phase transition IEP Predict GO terms from Neighborhoods
BP GO:0048509 regulation of meristem development IEP Predict GO terms from Neighborhoods
BP GO:0048510 regulation of timing of transition from vegetative to reproductive phase IEP Predict GO terms from Neighborhoods
BP GO:0048577 negative regulation of short-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048832 specification of plant organ number IEP Predict GO terms from Neighborhoods
BP GO:0048833 specification of floral organ number IEP Predict GO terms from Neighborhoods
BP GO:0048869 cellular developmental process IEP Predict GO terms from Neighborhoods
MF GO:0050780 dopamine receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0050830 defense response to Gram-positive bacterium IEP Predict GO terms from Neighborhoods
BP GO:0050906 detection of stimulus involved in sensory perception IEP Predict GO terms from Neighborhoods
BP GO:0050908 detection of light stimulus involved in visual perception IEP Predict GO terms from Neighborhoods
BP GO:0050962 detection of light stimulus involved in sensory perception IEP Predict GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Predict GO terms from Neighborhoods
MF GO:0051219 phosphoprotein binding IEP Predict GO terms from Neighborhoods
MF GO:0060090 molecular adaptor activity IEP Predict GO terms from Neighborhoods
BP GO:0061077 chaperone-mediated protein folding IEP Predict GO terms from Neighborhoods
CC GO:0061827 sperm head IEP Predict GO terms from Neighborhoods
BP GO:0061844 antimicrobial humoral immune response mediated by antimicrobial peptide IEP Predict GO terms from Neighborhoods
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0075260 regulation of spore-bearing organ development IEP Predict GO terms from Neighborhoods
BP GO:0075261 positive regulation of spore-bearing organ development IEP Predict GO terms from Neighborhoods
BP GO:0080112 seed growth IEP Predict GO terms from Neighborhoods
BP GO:0090083 regulation of inclusion body assembly IEP Predict GO terms from Neighborhoods
BP GO:0090084 negative regulation of inclusion body assembly IEP Predict GO terms from Neighborhoods
BP GO:0097201 negative regulation of transcription from RNA polymerase II promoter in response to stress IEP Predict GO terms from Neighborhoods
CC GO:0099522 cytosolic region IEP Predict GO terms from Neighborhoods
CC GO:0099524 postsynaptic cytosol IEP Predict GO terms from Neighborhoods
BP GO:0120035 regulation of plasma membrane bounded cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0120161 regulation of cold-induced thermogenesis IEP Predict GO terms from Neighborhoods
BP GO:0120163 negative regulation of cold-induced thermogenesis IEP Predict GO terms from Neighborhoods
BP GO:1900458 negative regulation of brassinosteroid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1901403 positive regulation of tetrapyrrole metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901465 positive regulation of tetrapyrrole biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902326 positive regulation of chlorophyll biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902667 regulation of axon guidance IEP Predict GO terms from Neighborhoods
MF GO:1990825 sequence-specific mRNA binding IEP Predict GO terms from Neighborhoods
BP GO:2000028 regulation of photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:2000242 negative regulation of reproductive process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR013730 Fyv7/TAP26 57 175
No external refs found!