SOLTUB.AGRIA.G00000024101

Description : Pre-mRNA-processing-splicing factor

Gene families : OG_02_0006314 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000024101
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_36

Type	GO Term	Name	Evidence	Source
BP	GO:0000244	spliceosomal tri-snRNP complex assembly	IEA	AHRD
BP	GO:0000350	generation of catalytic spliceosome for second transesterification step	IEA	AHRD
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000380	alternative mRNA splicing, via spliceosome	IEA	AHRD
BP	GO:0000387	spliceosomal snRNP assembly	None	Extended
BP	GO:0000389	mRNA 3'-splice site recognition	IEA	AHRD
BP	GO:0000395	mRNA 5'-splice site recognition	IEA	AHRD
BP	GO:0000398	mRNA splicing, via spliceosome	None	Extended
CC	GO:0000974	Prp19 complex	IEA	AHRD
BP	GO:0002237	response to molecule of bacterial origin	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004843	cysteine-type deubiquitinase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	None	Extended
CC	GO:0005682	U5 snRNP	IEA	AHRD
CC	GO:0005684	U2-type spliceosomal complex	None	Extended
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006376	mRNA splice site selection	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006508	proteolysis	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	IEA	AHRD
BP	GO:0008380	RNA splicing	None	Extended
CC	GO:0009506	plasmodesma	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0016604	nuclear body	None	Extended
CC	GO:0016607	nuclear speck	IEA	AHRD
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017069	snRNA binding	None	Extended
MF	GO:0017070	U6 snRNA binding	IEA	AHRD
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030532	small nuclear ribonucleoprotein complex	None	Extended
MF	GO:0030619	U1 snRNA binding	IEA	AHRD
MF	GO:0030620	U2 snRNA binding	IEA	AHRD
MF	GO:0030623	U5 snRNA binding	IEA	AHRD
MF	GO:0031593	polyubiquitin modification-dependent protein binding	None	Extended
BP	GO:0032496	response to lipopolysaccharide	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0034097	response to cytokine	None	Extended
BP	GO:0034612	response to tumor necrosis factor	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0036002	pre-mRNA binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
MF	GO:0070122	obsolete isopeptidase activity	IEA	AHRD
CC	GO:0070161	anchoring junction	None	Extended
MF	GO:0070530	K63-linked polyubiquitin modification-dependent protein binding	IEA	AHRD
BP	GO:0070647	protein modification by small protein conjugation or removal	IEA	AHRD
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
CC	GO:0071005	U2-type precatalytic spliceosome	IEA	AHRD
CC	GO:0071006	U2-type catalytic step 1 spliceosome	IEA	AHRD
CC	GO:0071007	U2-type catalytic step 2 spliceosome	IEA	AHRD
CC	GO:0071011	precatalytic spliceosome	None	Extended
CC	GO:0071012	catalytic step 1 spliceosome	None	Extended
CC	GO:0071013	catalytic step 2 spliceosome	None	Extended
CC	GO:0071014	post-mRNA release spliceosomal complex	IEA	AHRD
BP	GO:0071216	cellular response to biotic stimulus	None	Extended
BP	GO:0071219	cellular response to molecule of bacterial origin	None	Extended
BP	GO:0071222	cellular response to lipopolysaccharide	IEA	AHRD
BP	GO:0071310	cellular response to organic substance	None	Extended
BP	GO:0071345	cellular response to cytokine stimulus	None	Extended
BP	GO:0071356	cellular response to tumor necrosis factor	IEA	AHRD
BP	GO:0071396	cellular response to lipid	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097157	pre-mRNA intronic binding	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0097525	spliceosomal snRNP complex	None	Extended
CC	GO:0097526	spliceosomal tri-snRNP complex	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120114	Sm-like protein family complex	None	Extended
MF	GO:0140030	modification-dependent protein binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1901701	cellular response to oxygen-containing compound	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Predict GO terms from Neighborhoods
BP	GO:0000245	spliceosomal complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000349	generation of catalytic spliceosome for first transesterification step	IEP	Predict GO terms from Neighborhoods
BP	GO:0000390	spliceosomal complex disassembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0000785	chromatin	IEP	Predict GO terms from Neighborhoods
CC	GO:0000932	P-body	IEP	Predict GO terms from Neighborhoods
MF	GO:0001055	RNA polymerase II activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0001056	RNA polymerase III activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001667	ameboidal-type cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0001825	blastocyst formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0001882	nucleoside binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0002119	nematode larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002182	cytoplasmic translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0003002	regionalization	IEP	Predict GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003724	RNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003987	acetate-CoA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005049	nuclear export signal receptor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005665	RNA polymerase II, core complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005666	RNA polymerase III complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005686	U2 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005689	U12-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005776	autophagosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005829	cytosol	IEP	Predict GO terms from Neighborhoods
BP	GO:0006067	ethanol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006069	ethanol oxidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006083	acetate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006085	acetyl-CoA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006111	regulation of gluconeogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006277	DNA amplification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0006366	transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0006383	transcription by RNA polymerase III	IEP	Predict GO terms from Neighborhoods
BP	GO:0006405	RNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006415	translational termination	IEP	Predict GO terms from Neighborhoods
BP	GO:0006448	regulation of translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006611	protein export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007281	germ cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007286	spermatid development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007307	eggshell chorion gene amplification	IEP	Predict GO terms from Neighborhoods
BP	GO:0007346	regulation of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0007389	pattern specification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007444	imaginal disc development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007530	sex determination	IEP	Predict GO terms from Neighborhoods
BP	GO:0007605	sensory perception of sound	IEP	Predict GO terms from Neighborhoods
BP	GO:0008078	mesodermal cell migration	IEP	Predict GO terms from Neighborhoods
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0008406	gonad development	IEP	Predict GO terms from Neighborhoods
CC	GO:0008540	proteasome regulatory particle, base subcomplex	IEP	Predict GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009304	tRNA transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0009653	anatomical structure morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009712	catechol-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009733	response to auxin	IEP	Predict GO terms from Neighborhoods
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009894	regulation of catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009896	positive regulation of catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009952	anterior/posterior pattern specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009965	leaf morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010014	meristem initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010071	root meristem specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010072	primary shoot apical meristem specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010171	body morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010172	embryonic body morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010265	SCF complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0010390	histone monoubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010447	response to acidic pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0010468	regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010498	proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010564	regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010628	positive regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010675	regulation of cellular carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010676	positive regulation of cellular carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010907	positive regulation of glucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010981	regulation of cell wall macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0015645	fatty acid ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016055	Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0016208	AMP binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0016239	positive regulation of macroautophagy	IEP	Predict GO terms from Neighborhoods
MF	GO:0016273	arginine N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016274	protein-arginine N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016574	histone ubiquitination	IEP	Predict GO terms from Neighborhoods
CC	GO:0016592	mediator complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
MF	GO:0017025	TBP-class protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0018992	germ-line sex determination	IEP	Predict GO terms from Neighborhoods
BP	GO:0018996	molting cycle, collagen and cuticulin-based cuticle	IEP	Predict GO terms from Neighborhoods
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019222	regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019427	acetyl-CoA biosynthetic process from acetate	IEP	Predict GO terms from Neighborhoods
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022411	cellular component disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	Predict GO terms from Neighborhoods
BP	GO:0030163	protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030534	adult behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0031047	gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0031053	primary miRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0031074	nucleocytoplasmic transport complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031329	regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031331	positive regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031334	positive regulation of protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0031400	negative regulation of protein modification process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031464	Cul4A-RING E3 ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031465	Cul4B-RING E3 ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0031955	short-chain fatty acid-CoA ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032006	regulation of TOR signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0032007	negative regulation of TOR signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0032056	positive regulation of translation in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0032058	positive regulation of translational initiation in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032479	regulation of type I interferon production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032481	positive regulation of type I interferon production	IEP	Predict GO terms from Neighborhoods
MF	GO:0032549	ribonucleoside binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032648	regulation of interferon-beta production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032728	positive regulation of interferon-beta production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032950	regulation of beta-glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032951	regulation of beta-glucan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032984	protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0032988	ribonucleoprotein complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0033044	regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0033522	histone H2A ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0034198	cellular response to amino acid starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0034515	proteasome storage granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0034693	U11/U12 snRNP	IEP	Predict GO terms from Neighborhoods
BP	GO:0035196	miRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0035220	wing disc development	IEP	Predict GO terms from Neighborhoods
BP	GO:0035384	thioester biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035518	histone H2A monoubiquitination	IEP	Predict GO terms from Neighborhoods
CC	GO:0035578	azurophil granule lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0035770	ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0035861	site of double-strand break	IEP	Predict GO terms from Neighborhoods
BP	GO:0036003	positive regulation of transcription from RNA polymerase II promoter in response to stress	IEP	Predict GO terms from Neighborhoods
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0040021	hermaphrodite germ-line sex determination	IEP	Predict GO terms from Neighborhoods
BP	GO:0040022	feminization of hermaphroditic germ-line	IEP	Predict GO terms from Neighborhoods
BP	GO:0042065	glial cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0042176	regulation of protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042303	molting cycle	IEP	Predict GO terms from Neighborhoods
CC	GO:0042565	RNA nuclear export complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0042797	tRNA transcription by RNA polymerase III	IEP	Predict GO terms from Neighborhoods
BP	GO:0042981	regulation of apoptotic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0043008	ATP-dependent protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043023	ribosomal large subunit binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0043248	proteasome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043255	regulation of carbohydrate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043555	regulation of translation in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0043558	regulation of translational initiation in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043633	polyadenylation-dependent RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0045069	regulation of viral genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0045070	positive regulation of viral genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0045722	positive regulation of gluconeogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045840	positive regulation of mitotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0045842	positive regulation of mitotic metaphase/anaphase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0045879	negative regulation of smoothened signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0045898	regulation of RNA polymerase II transcription preinitiation complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0045899	positive regulation of RNA polymerase II transcription preinitiation complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0045913	positive regulation of carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045948	positive regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046719	regulation by virus of viral protein levels in host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0046726	positive regulation by virus of viral protein levels in host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0048149	behavioral response to ethanol	IEP	Predict GO terms from Neighborhoods
BP	GO:0048281	inflorescence morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048468	cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048518	positive regulation of biological process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048522	positive regulation of cellular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048524	positive regulation of viral process	IEP	Predict GO terms from Neighborhoods
MF	GO:0050218	propionate-CoA ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050657	nucleic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050658	RNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050789	regulation of biological process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050794	regulation of cellular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050954	sensory perception of mechanical stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051130	positive regulation of cellular component organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051168	nuclear export	IEP	Predict GO terms from Neighborhoods
BP	GO:0051169	nuclear transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051236	establishment of RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051248	negative regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0060260	regulation of transcription initiation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0060261	positive regulation of transcription initiation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0060429	epithelium development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061716	miRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0065007	biological regulation	IEP	Predict GO terms from Neighborhoods
CC	GO:0070461	SAGA-type complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0070914	UV-damage excision repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0070918	small regulatory ncRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0071004	U2-type prespliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071008	U2-type post-mRNA release spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071010	prespliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071047	polyadenylation-dependent mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071262	regulation of translational initiation in response to starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071264	positive regulation of translational initiation in response to starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071365	cellular response to auxin stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071467	cellular response to pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0071468	cellular response to acidic pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0071495	cellular response to endogenous stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071616	acyl-CoA biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0071987	WD40-repeat domain binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0072344	rescue of stalled ribosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0072755	cellular response to benomyl	IEP	Predict GO terms from Neighborhoods
BP	GO:0080090	regulation of primary metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090421	embryonic meristem initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0097064	ncRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
MF	GO:0097602	cullin family protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0098781	ncRNA transcription	IEP	Predict GO terms from Neighborhoods
CC	GO:0099080	supramolecular complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0110154	RNA decapping	IEP	Predict GO terms from Neighborhoods
BP	GO:0110156	methylguanosine-cap decapping	IEP	Predict GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140467	integrated stress response signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0140469	GCN2-mediated signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Predict GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901561	response to benomyl	IEP	Predict GO terms from Neighborhoods
BP	GO:1901672	positive regulation of systemic acquired resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:1901970	positive regulation of mitotic sister chromatid separation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902101	positive regulation of metaphase/anaphase transition of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1902188	obsolete positive regulation of viral release from host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:1903432	regulation of TORC1 signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:1904262	negative regulation of TORC1 signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:1905114	cell surface receptor signaling pathway involved in cell-cell signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:1905392	plant organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1905499	trichome papilla formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905820	positive regulation of chromosome separation	IEP	Predict GO terms from Neighborhoods
CC	GO:1990112	RQC complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1990116	ribosome-associated ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1990120	messenger ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1990253	cellular response to leucine starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:1990428	miRNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1990451	cellular stress response to acidic pH	IEP	Predict GO terms from Neighborhoods
BP	GO:1990928	response to amino acid starvation	IEP	Predict GO terms from Neighborhoods
MF	GO:1990935	splicing factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000142	regulation of DNA-templated transcription initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000144	positive regulation of DNA-templated transcription initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000434	regulation of protein neddylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000435	negative regulation of protein neddylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2001006	regulation of cellulose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2001008	positive regulation of cellulose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2001009	regulation of plant-type cell wall cellulose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2001011	positive regulation of plant-type cell wall cellulose biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR021983	PRP8_domainIV	1804	2024
IPR012592	PROCN	449	852
IPR012984	PROCT	2247	2367
IPR019582	RRM_spliceosomal_PrP8	1037	1127
IPR012337	RNaseH-like_sf	1807	2050
IPR019580	Prp8_U6-snRNA-bd	1494	1644
IPR012591	PRO8NT	112	263
IPR012337	RNaseH-like_sf	1048	1305
IPR000555	JAMM/MPN+_dom	2136	2234
IPR019581	Prp8_U5-snRNA-bd	1262	1395

External Links

No external refs found!

SOLTUB.AGRIA.G00000024101

Expression Profile

Co-expression Networks

Functional Annotation