SOLTUB.AGRIA.G00000002562

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_02_0012061 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000002562
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_237

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	IEA	AHRD
BP	GO:0016070	RNA metabolic process	IEA	AHRD
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000027	ribosomal large subunit assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000082	G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0001018	mitochondrial promoter sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	IEP	Predict GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001701	in utero embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0001756	somitogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0001822	kidney development	IEP	Predict GO terms from Neighborhoods
BP	GO:0001826	inner cell mass cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002128	tRNA nucleoside ribose methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002521	leukocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0003002	regionalization	IEP	Predict GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005739	mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0006390	mitochondrial transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0007219	Notch signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007276	gamete generation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007292	female gamete generation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008171	O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009295	nucleoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009301	snRNA transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0009668	plastid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009952	anterior/posterior pattern specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009954	proximal/distal pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010027	thylakoid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010093	specification of floral organ identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010109	regulation of photosynthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010205	photoinhibition	IEP	Predict GO terms from Neighborhoods
BP	GO:0010206	photosystem II repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0010589	leaf proximal/distal pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010951	negative regulation of endopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016073	snRNA metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predict GO terms from Neighborhoods
BP	GO:0017145	stem cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0022904	respiratory electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0030091	protein repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0030098	lymphocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030099	myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030177	positive regulation of Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0030183	B cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030488	tRNA methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031590	wybutosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031591	wybutosine biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031977	thylakoid lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0034245	mitochondrial DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0035097	histone methyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0035194	post-transcriptional gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0035195	miRNA-mediated gene silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0035196	miRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0035279	miRNA-mediated gene silencing by mRNA destabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0035282	segmentation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042113	B cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042273	ribosomal large subunit biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
CC	GO:0042645	mitochondrial nucleoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0042773	ATP synthesis coupled electron transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0042775	mitochondrial ATP synthesis coupled electron transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043154	negative regulation of cysteine-type endopeptidase activity involved in apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043155	negative regulation of photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0043281	regulation of cysteine-type endopeptidase activity involved in apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043414	macromolecule methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0044665	MLL1/2 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0044843	cell cycle G1/S phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0046649	lymphocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048477	oogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048536	spleen development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048538	thymus development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048564	photosystem I assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0048565	digestive tract development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048566	embryonic digestive tract development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048568	embryonic organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048705	skeletal system morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048872	homeostasis of number of cells	IEP	Predict GO terms from Neighborhoods
BP	GO:0050779	RNA destabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0050865	regulation of cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050867	positive regulation of cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051248	negative regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061157	mRNA destabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0061484	hematopoietic stem cell homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0061715	obsolete miRNA 2'-O-methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0062105	RNA 2'-O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070741	response to interleukin-6	IEP	Predict GO terms from Neighborhoods
CC	GO:0071339	MLL1 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071354	cellular response to interleukin-6	IEP	Predict GO terms from Neighborhoods
MF	GO:0071987	WD40-repeat domain binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0090263	positive regulation of canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090701	specification of plant organ identity	IEP	Predict GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0098781	ncRNA transcription	IEP	Predict GO terms from Neighborhoods
MF	GO:0106050	tRNA 2'-O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0140223	general transcription initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Predict GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1903131	mononuclear cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905156	negative regulation of photosynthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1990823	response to leukemia inhibitory factor	IEP	Predict GO terms from Neighborhoods
BP	GO:1990830	cellular response to leukemia inhibitory factor	IEP	Predict GO terms from Neighborhoods
BP	GO:2000116	regulation of cysteine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2000117	negative regulation of cysteine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2001234	negative regulation of apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2001267	regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2001268	negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	268	301
IPR002885	Pentatricopeptide_repeat	439	472
IPR002885	Pentatricopeptide_repeat	302	335
IPR002885	Pentatricopeptide_repeat	509	542
IPR002885	Pentatricopeptide_repeat	404	437
IPR002885	Pentatricopeptide_repeat	545	577
IPR002885	Pentatricopeptide_repeat	337	371
IPR002885	Pentatricopeptide_repeat	477	498
IPR002885	Pentatricopeptide_repeat	237	262
IPR002885	Pentatricopeptide_repeat	401	450
IPR002885	Pentatricopeptide_repeat	334	382
IPR002885	Pentatricopeptide_repeat	507	555
IPR002885	Pentatricopeptide_repeat	268	311

External Links

No external refs found!

SOLTUB.AGRIA.G00000002562

Expression Profile

Co-expression Networks

Functional Annotation