SOLTUB.AGRIA.G00000024816


Description : RNA polymerase-associated protein CTR9-like protein


Gene families : OG_02_0009808 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000024816
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_269


Type GO Term Name Evidence Source
MF GO:0000993 RNA polymerase II complex binding IEA AHRD
BP GO:0001825 blastocyst formation IEA AHRD
BP GO:0006354 DNA-templated transcription elongation IEA AHRD
BP GO:0006357 regulation of transcription by RNA polymerase II IEA AHRD
BP GO:0007166 cell surface receptor signaling pathway IEA AHRD
BP GO:0009910 negative regulation of flower development IEA AHRD
CC GO:0016593 Cdc73/Paf1 complex IEA AHRD
MF GO:0016740 transferase activity IEA AHRD
BP GO:0030154 cell differentiation IEA AHRD
BP GO:0031062 positive regulation of histone methylation IEA AHRD
BP GO:0045893 positive regulation of DNA-templated transcription IEA AHRD
BP GO:0051253 negative regulation of RNA metabolic process IEA AHRD
BP GO:0051569 regulation of histone H3-K4 methylation IEA AHRD
BP GO:0071310 cellular response to organic substance IEA AHRD
BP GO:2001166 regulation of histone H2B ubiquitination IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000022 mitotic spindle elongation IEP Predict GO terms from Neighborhoods
CC GO:0000243 commitment complex IEP Predict GO terms from Neighborhoods
BP GO:0000349 generation of catalytic spliceosome for first transesterification step IEP Predict GO terms from Neighborhoods
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Predict GO terms from Neighborhoods
MF GO:0000386 second spliceosomal transesterification activity IEP Predict GO terms from Neighborhoods
BP GO:0000389 mRNA 3'-splice site recognition IEP Predict GO terms from Neighborhoods
BP GO:0000390 spliceosomal complex disassembly IEP Predict GO terms from Neighborhoods
CC GO:0000775 chromosome, centromeric region IEP Predict GO terms from Neighborhoods
CC GO:0000922 spindle pole IEP Predict GO terms from Neighborhoods
CC GO:0000930 gamma-tubulin complex IEP Predict GO terms from Neighborhoods
CC GO:0001650 fibrillar center IEP Predict GO terms from Neighborhoods
BP GO:0001952 regulation of cell-matrix adhesion IEP Predict GO terms from Neighborhoods
BP GO:0002119 nematode larval development IEP Predict GO terms from Neighborhoods
BP GO:0002164 larval development IEP Predict GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003823 antigen binding IEP Predict GO terms from Neighborhoods
MF GO:0005200 structural constituent of cytoskeleton IEP Predict GO terms from Neighborhoods
CC GO:0005634 nucleus IEP Predict GO terms from Neighborhoods
CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005684 U2-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Predict GO terms from Neighborhoods
CC GO:0005814 centriole IEP Predict GO terms from Neighborhoods
CC GO:0005815 microtubule organizing center IEP Predict GO terms from Neighborhoods
CC GO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEP Predict GO terms from Neighborhoods
CC GO:0005849 mRNA cleavage factor complex IEP Predict GO terms from Neighborhoods
CC GO:0005856 cytoskeleton IEP Predict GO terms from Neighborhoods
BP GO:0006376 mRNA splice site selection IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006446 regulation of translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0007026 negative regulation of microtubule depolymerization IEP Predict GO terms from Neighborhoods
BP GO:0007249 I-kappaB kinase/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:0007276 gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0007281 germ cell development IEP Predict GO terms from Neighborhoods
BP GO:0007292 female gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0007530 sex determination IEP Predict GO terms from Neighborhoods
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Predict GO terms from Neighborhoods
BP GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:0010171 body morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010172 embryonic body morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010810 regulation of cell-substrate adhesion IEP Predict GO terms from Neighborhoods
BP GO:0010842 retina layer formation IEP Predict GO terms from Neighborhoods
BP GO:0016073 snRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016180 snRNA processing IEP Predict GO terms from Neighborhoods
CC GO:0016604 nuclear body IEP Predict GO terms from Neighborhoods
CC GO:0016605 PML body IEP Predict GO terms from Neighborhoods
CC GO:0016607 nuclear speck IEP Predict GO terms from Neighborhoods
BP GO:0016925 protein sumoylation IEP Predict GO terms from Neighborhoods
BP GO:0018193 peptidyl-amino acid modification IEP Predict GO terms from Neighborhoods
BP GO:0018205 peptidyl-lysine modification IEP Predict GO terms from Neighborhoods
BP GO:0018992 germ-line sex determination IEP Predict GO terms from Neighborhoods
BP GO:0019048 modulation by virus of host process IEP Predict GO terms from Neighborhoods
BP GO:0019054 modulation by virus of host cellular process IEP Predict GO terms from Neighborhoods
MF GO:0019208 phosphatase regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0019789 SUMO transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0019888 protein phosphatase regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0022402 cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0030098 lymphocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0030163 protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0030183 B cell differentiation IEP Predict GO terms from Neighborhoods
CC GO:0030426 growth cone IEP Predict GO terms from Neighborhoods
MF GO:0030628 pre-mRNA 3'-splice site binding IEP Predict GO terms from Neighborhoods
CC GO:0030863 cortical cytoskeleton IEP Predict GO terms from Neighborhoods
CC GO:0030864 cortical actin cytoskeleton IEP Predict GO terms from Neighborhoods
CC GO:0030875 rDNA protrusion IEP Predict GO terms from Neighborhoods
BP GO:0030953 astral microtubule organization IEP Predict GO terms from Neighborhoods
CC GO:0030981 cortical microtubule cytoskeleton IEP Predict GO terms from Neighborhoods
CC GO:0031011 Ino80 complex IEP Predict GO terms from Neighborhoods
BP GO:0031053 primary miRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0031109 microtubule polymerization or depolymerization IEP Predict GO terms from Neighborhoods
BP GO:0031110 regulation of microtubule polymerization or depolymerization IEP Predict GO terms from Neighborhoods
BP GO:0031111 negative regulation of microtubule polymerization or depolymerization IEP Predict GO terms from Neighborhoods
BP GO:0031112 positive regulation of microtubule polymerization or depolymerization IEP Predict GO terms from Neighborhoods
BP GO:0031114 regulation of microtubule depolymerization IEP Predict GO terms from Neighborhoods
CC GO:0031252 cell leading edge IEP Predict GO terms from Neighborhoods
BP GO:0031440 regulation of mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031937 obsolete positive regulation of chromatin silencing IEP Predict GO terms from Neighborhoods
BP GO:0032239 regulation of nucleobase-containing compound transport IEP Predict GO terms from Neighborhoods
BP GO:0032241 positive regulation of nucleobase-containing compound transport IEP Predict GO terms from Neighborhoods
CC GO:0032391 photoreceptor connecting cilium IEP Predict GO terms from Neighborhoods
BP GO:0032507 maintenance of protein location in cell IEP Predict GO terms from Neighborhoods
CC GO:0032838 plasma membrane bounded cell projection cytoplasm IEP Predict GO terms from Neighborhoods
CC GO:0032839 dendrite cytoplasm IEP Predict GO terms from Neighborhoods
BP GO:0032988 ribonucleoprotein complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0033120 positive regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034472 snRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035065 regulation of histone acetylation IEP Predict GO terms from Neighborhoods
BP GO:0035196 miRNA processing IEP Predict GO terms from Neighborhoods
CC GO:0035371 microtubule plus-end IEP Predict GO terms from Neighborhoods
BP GO:0035821 modulation of process of another organism IEP Predict GO terms from Neighborhoods
BP GO:0035845 photoreceptor cell outer segment organization IEP Predict GO terms from Neighborhoods
CC GO:0035869 ciliary transition zone IEP Predict GO terms from Neighborhoods
MF GO:0036002 pre-mRNA binding IEP Predict GO terms from Neighborhoods
CC GO:0036064 ciliary basal body IEP Predict GO terms from Neighborhoods
BP GO:0039648 modulation by virus of host protein ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0040021 hermaphrodite germ-line sex determination IEP Predict GO terms from Neighborhoods
BP GO:0040022 feminization of hermaphroditic germ-line IEP Predict GO terms from Neighborhoods
BP GO:0042023 DNA endoreduplication IEP Predict GO terms from Neighborhoods
BP GO:0042113 B cell activation IEP Predict GO terms from Neighborhoods
BP GO:0042461 photoreceptor cell development IEP Predict GO terms from Neighborhoods
BP GO:0042462 eye photoreceptor cell development IEP Predict GO terms from Neighborhoods
BP GO:0042771 intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator IEP Predict GO terms from Neighborhoods
CC GO:0043226 organelle IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043229 intracellular organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043242 negative regulation of protein-containing complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0043484 regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
BP GO:0044003 modulation by symbiont of host process IEP Predict GO terms from Neighborhoods
BP GO:0044030 regulation of DNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0044068 modulation by symbiont of host cellular process IEP Predict GO terms from Neighborhoods
BP GO:0044089 positive regulation of cellular component biogenesis IEP Predict GO terms from Neighborhoods
MF GO:0044547 DNA topoisomerase binding IEP Predict GO terms from Neighborhoods
BP GO:0044786 cell cycle DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0045132 meiotic chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0045185 maintenance of protein location IEP Predict GO terms from Neighborhoods
BP GO:0045948 positive regulation of translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0046548 retinal rod cell development IEP Predict GO terms from Neighborhoods
BP GO:0046549 retinal cone cell development IEP Predict GO terms from Neighborhoods
BP GO:0046785 microtubule polymerization IEP Predict GO terms from Neighborhoods
BP GO:0046824 positive regulation of nucleocytoplasmic transport IEP Predict GO terms from Neighborhoods
BP GO:0046831 regulation of RNA export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0046833 positive regulation of RNA export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0048468 cell development IEP Predict GO terms from Neighborhoods
BP GO:0048477 oogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048598 embryonic morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048766 root hair initiation IEP Predict GO terms from Neighborhoods
BP GO:0050684 regulation of mRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0051010 microtubule plus-end binding IEP Predict GO terms from Neighborhoods
BP GO:0051231 spindle elongation IEP Predict GO terms from Neighborhoods
CC GO:0051233 spindle midzone IEP Predict GO terms from Neighborhoods
BP GO:0051255 spindle midzone assembly IEP Predict GO terms from Neighborhoods
BP GO:0051258 protein polymerization IEP Predict GO terms from Neighborhoods
BP GO:0051293 establishment of spindle localization IEP Predict GO terms from Neighborhoods
BP GO:0051301 cell division IEP Predict GO terms from Neighborhoods
BP GO:0051304 chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:0051438 regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051443 positive regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051457 maintenance of protein location in nucleus IEP Predict GO terms from Neighborhoods
BP GO:0051494 negative regulation of cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0051495 positive regulation of cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0051568 histone H3-K4 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051570 regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051653 spindle localization IEP Predict GO terms from Neighborhoods
BP GO:0051781 positive regulation of cell division IEP Predict GO terms from Neighborhoods
BP GO:0051893 regulation of focal adhesion assembly IEP Predict GO terms from Neighborhoods
BP GO:0060194 regulation of antisense RNA transcription IEP Predict GO terms from Neighborhoods
BP GO:0060195 negative regulation of antisense RNA transcription IEP Predict GO terms from Neighborhoods
BP GO:0060968 obsolete regulation of gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0061085 regulation of histone H3-K27 methylation IEP Predict GO terms from Neighborhoods
BP GO:0061087 positive regulation of histone H3-K27 methylation IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predict GO terms from Neighborhoods
MF GO:0070742 C2H2 zinc finger domain binding IEP Predict GO terms from Neighborhoods
BP GO:0070829 obsolete heterochromatin maintenance IEP Predict GO terms from Neighborhoods
BP GO:0070914 UV-damage excision repair IEP Predict GO terms from Neighborhoods
BP GO:0070918 small regulatory ncRNA processing IEP Predict GO terms from Neighborhoods
CC GO:0071004 U2-type prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071005 U2-type precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071007 U2-type catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071010 prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071011 precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071014 post-mRNA release spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0071020 post-spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0071021 U2-type post-spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0071598 neuronal ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
CC GO:0071920 cleavage body IEP Predict GO terms from Neighborhoods
BP GO:0072331 signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:0072595 maintenance of protein localization in organelle IEP Predict GO terms from Neighborhoods
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0089701 U2AF complex IEP Predict GO terms from Neighborhoods
BP GO:0090057 root radial pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0090109 regulation of cell-substrate junction assembly IEP Predict GO terms from Neighborhoods
BP GO:0090307 mitotic spindle assembly IEP Predict GO terms from Neighborhoods
BP GO:0090436 leaf pavement cell development IEP Predict GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:0097193 intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0097346 INO80-type complex IEP Predict GO terms from Neighborhoods
BP GO:0098813 nuclear chromosome segregation IEP Predict GO terms from Neighborhoods
CC GO:0099568 cytoplasmic region IEP Predict GO terms from Neighborhoods
CC GO:0110165 cellular anatomical entity IEP Predict GO terms from Neighborhoods
CC GO:0120111 neuron projection cytoplasm IEP Predict GO terms from Neighborhoods
MF GO:0140096 catalytic activity, acting on a protein IEP Predict GO terms from Neighborhoods
BP GO:0140747 regulation of ncRNA transcription IEP Predict GO terms from Neighborhoods
BP GO:0150116 regulation of cell-substrate junction organization IEP Predict GO terms from Neighborhoods
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP Predict GO terms from Neighborhoods
BP GO:1900111 positive regulation of histone H3-K9 dimethylation IEP Predict GO terms from Neighborhoods
BP GO:1900363 regulation of mRNA polyadenylation IEP Predict GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:1901879 regulation of protein depolymerization IEP Predict GO terms from Neighborhoods
BP GO:1901880 negative regulation of protein depolymerization IEP Predict GO terms from Neighborhoods
BP GO:1901888 regulation of cell junction assembly IEP Predict GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Predict GO terms from Neighborhoods
BP GO:1902904 negative regulation of supramolecular fiber organization IEP Predict GO terms from Neighborhoods
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Predict GO terms from Neighborhoods
BP GO:1903053 regulation of extracellular matrix organization IEP Predict GO terms from Neighborhoods
BP GO:1903055 positive regulation of extracellular matrix organization IEP Predict GO terms from Neighborhoods
BP GO:1903131 mononuclear cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1903311 regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
CC GO:1904949 ATPase complex IEP Predict GO terms from Neighborhoods
CC GO:1990752 microtubule end IEP Predict GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
MF GO:1990935 splicing factor binding IEP Predict GO terms from Neighborhoods
BP GO:2000024 regulation of leaf development IEP Predict GO terms from Neighborhoods
BP GO:2000756 regulation of peptidyl-lysine acetylation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011990 TPR-like_helical_dom_sf 107 295
IPR011990 TPR-like_helical_dom_sf 540 819
IPR019734 TPR_repeat 201 230
IPR019734 TPR_repeat 306 334
No external refs found!