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  5. SOLTUB.AGRIA.G00000025093

SOLTUB.AGRIA.G00000025093


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_02_0015759 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000025093
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_229


Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA AHRD
BP GO:0006396 RNA processing IEA AHRD
CC GO:0009536 plastid IEA AHRD
BP GO:0016556 mRNA modification IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
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Type GO Term Name Evidence Source
CC GO:0000118 histone deacetylase complex IEP Predict GO terms from Neighborhoods
CC GO:0000123 histone acetyltransferase complex IEP Predict GO terms from Neighborhoods
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
BP GO:0000373 Group II intron splicing IEP Predict GO terms from Neighborhoods
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
CC GO:0000792 heterochromatin IEP Predict GO terms from Neighborhoods
BP GO:0000966 RNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0001701 in utero embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0001967 suckling behavior IEP Predict GO terms from Neighborhoods
BP GO:0002230 positive regulation of defense response to virus by host IEP Predict GO terms from Neighborhoods
BP GO:0002685 regulation of leukocyte migration IEP Predict GO terms from Neighborhoods
BP GO:0002686 negative regulation of leukocyte migration IEP Predict GO terms from Neighborhoods
BP GO:0002688 regulation of leukocyte chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0002689 negative regulation of leukocyte chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0002831 regulation of response to biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0003008 system process IEP Predict GO terms from Neighborhoods
BP GO:0003012 muscle system process IEP Predict GO terms from Neighborhoods
BP GO:0003299 muscle hypertrophy in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0003300 cardiac muscle hypertrophy IEP Predict GO terms from Neighborhoods
MF GO:0003682 chromatin binding IEP Predict GO terms from Neighborhoods
MF GO:0004016 adenylate cyclase activity IEP Predict GO terms from Neighborhoods
MF GO:0004725 protein tyrosine phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0004842 ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006469 negative regulation of protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0006473 protein acetylation IEP Predict GO terms from Neighborhoods
BP GO:0006475 internal protein amino acid acetylation IEP Predict GO terms from Neighborhoods
BP GO:0006482 protein demethylation IEP Predict GO terms from Neighborhoods
BP GO:0007162 negative regulation of cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0007525 somatic muscle development IEP Predict GO terms from Neighborhoods
BP GO:0007526 larval somatic muscle development IEP Predict GO terms from Neighborhoods
BP GO:0007606 sensory perception of chemical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0007608 sensory perception of smell IEP Predict GO terms from Neighborhoods
BP GO:0007610 behavior IEP Predict GO terms from Neighborhoods
BP GO:0007622 rhythmic behavior IEP Predict GO terms from Neighborhoods
BP GO:0007626 locomotory behavior IEP Predict GO terms from Neighborhoods
BP GO:0007631 feeding behavior IEP Predict GO terms from Neighborhoods
BP GO:0007635 chemosensory behavior IEP Predict GO terms from Neighborhoods
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0008214 protein dealkylation IEP Predict GO terms from Neighborhoods
MF GO:0008330 protein tyrosine/threonine phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0009637 response to blue light IEP Predict GO terms from Neighborhoods
BP GO:0009642 response to light intensity IEP Predict GO terms from Neighborhoods
BP GO:0009646 response to absence of light IEP Predict GO terms from Neighborhoods
BP GO:0009647 skotomorphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009649 entrainment of circadian clock IEP Predict GO terms from Neighborhoods
BP GO:0009893 positive regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010044 response to aluminum ion IEP Predict GO terms from Neighborhoods
BP GO:0010099 regulation of photomorphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010100 negative regulation of photomorphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010225 response to UV-C IEP Predict GO terms from Neighborhoods
BP GO:0010239 chloroplast mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Predict GO terms from Neighborhoods
BP GO:0014070 response to organic cyclic compound IEP Predict GO terms from Neighborhoods
BP GO:0014074 response to purine-containing compound IEP Predict GO terms from Neighborhoods
BP GO:0014887 cardiac muscle adaptation IEP Predict GO terms from Neighborhoods
BP GO:0014888 striated muscle adaptation IEP Predict GO terms from Neighborhoods
BP GO:0014896 muscle hypertrophy IEP Predict GO terms from Neighborhoods
BP GO:0014897 striated muscle hypertrophy IEP Predict GO terms from Neighborhoods
BP GO:0014898 cardiac muscle hypertrophy in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0016570 histone modification IEP Predict GO terms from Neighborhoods
BP GO:0016573 histone acetylation IEP Predict GO terms from Neighborhoods
BP GO:0016577 histone demethylation IEP Predict GO terms from Neighborhoods
MF GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0018205 peptidyl-lysine modification IEP Predict GO terms from Neighborhoods
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predict GO terms from Neighborhoods
BP GO:0018394 peptidyl-lysine acetylation IEP Predict GO terms from Neighborhoods
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0019838 growth factor binding IEP Predict GO terms from Neighborhoods
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Predict GO terms from Neighborhoods
BP GO:0030336 negative regulation of cell migration IEP Predict GO terms from Neighborhoods
BP GO:0030717 oocyte karyosome formation IEP Predict GO terms from Neighborhoods
BP GO:0030718 germ-line stem cell population maintenance IEP Predict GO terms from Neighborhoods
BP GO:0031057 negative regulation of histone modification IEP Predict GO terms from Neighborhoods
CC GO:0031248 protein acetyltransferase complex IEP Predict GO terms from Neighborhoods
BP GO:0031325 positive regulation of cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031347 regulation of defense response IEP Predict GO terms from Neighborhoods
BP GO:0031400 negative regulation of protein modification process IEP Predict GO terms from Neighborhoods
CC GO:0031464 Cul4A-RING E3 ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
BP GO:0031960 response to corticosteroid IEP Predict GO terms from Neighborhoods
BP GO:0032101 regulation of response to external stimulus IEP Predict GO terms from Neighborhoods
BP GO:0032355 response to estradiol IEP Predict GO terms from Neighborhoods
MF GO:0032451 demethylase activity IEP Predict GO terms from Neighborhoods
MF GO:0032452 histone demethylase activity IEP Predict GO terms from Neighborhoods
MF GO:0032453 histone H3-methyl-lysine-4 demethylase activity IEP Predict GO terms from Neighborhoods
BP GO:0032526 response to retinoic acid IEP Predict GO terms from Neighborhoods
BP GO:0032872 regulation of stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0032873 negative regulation of stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0032922 circadian regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0033045 regulation of sister chromatid segregation IEP Predict GO terms from Neighborhoods
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Predict GO terms from Neighborhoods
BP GO:0033169 histone H3-K9 demethylation IEP Predict GO terms from Neighborhoods
BP GO:0033198 response to ATP IEP Predict GO terms from Neighborhoods
MF GO:0033549 MAP kinase phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0033574 response to testosterone IEP Predict GO terms from Neighborhoods
BP GO:0033673 negative regulation of kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0033749 histone H3-methyl-arginine-3 demethylase activity IEP Predict GO terms from Neighborhoods
MF GO:0034647 histone H3-tri/di/monomethyl-lysine-4 demethylase activity IEP Predict GO terms from Neighborhoods
BP GO:0034720 histone H3-K4 demethylation IEP Predict GO terms from Neighborhoods
BP GO:0034721 histone H3-K4 demethylation, trimethyl-H3-K4-specific IEP Predict GO terms from Neighborhoods
BP GO:0035065 regulation of histone acetylation IEP Predict GO terms from Neighborhoods
BP GO:0035067 negative regulation of histone acetylation IEP Predict GO terms from Neighborhoods
CC GO:0035097 histone methyltransferase complex IEP Predict GO terms from Neighborhoods
BP GO:0035335 peptidyl-tyrosine dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0035970 peptidyl-threonine dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0036098 male germ-line stem cell population maintenance IEP Predict GO terms from Neighborhoods
BP GO:0040009 regulation of growth rate IEP Predict GO terms from Neighborhoods
BP GO:0040010 positive regulation of growth rate IEP Predict GO terms from Neighborhoods
BP GO:0040013 negative regulation of locomotion IEP Predict GO terms from Neighborhoods
BP GO:0042048 olfactory behavior IEP Predict GO terms from Neighborhoods
BP GO:0042742 defense response to bacterium IEP Predict GO terms from Neighborhoods
MF GO:0042826 histone deacetylase binding IEP Predict GO terms from Neighborhoods
BP GO:0043405 regulation of MAP kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0043407 negative regulation of MAP kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0043409 negative regulation of MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0043500 muscle adaptation IEP Predict GO terms from Neighborhoods
BP GO:0043506 regulation of JUN kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0043543 protein acylation IEP Predict GO terms from Neighborhoods
BP GO:0043966 histone H3 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0043970 histone H3-K9 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0045292 mRNA cis splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0045475 locomotor rhythm IEP Predict GO terms from Neighborhoods
BP GO:0045815 epigenetic maintenance of chromatin in transcription-competent conformation IEP Predict GO terms from Neighborhoods
BP GO:0045860 positive regulation of protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0046328 regulation of JNK cascade IEP Predict GO terms from Neighborhoods
BP GO:0046329 negative regulation of JNK cascade IEP Predict GO terms from Neighborhoods
BP GO:0046683 response to organophosphorus IEP Predict GO terms from Neighborhoods
BP GO:0048512 circadian behavior IEP Predict GO terms from Neighborhoods
BP GO:0048564 photosystem I assembly IEP Predict GO terms from Neighborhoods
BP GO:0048569 post-embryonic animal organ development IEP Predict GO terms from Neighborhoods
BP GO:0048572 short-day photoperiodism IEP Predict GO terms from Neighborhoods
BP GO:0048575 short-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048577 negative regulation of short-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048579 negative regulation of long-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048580 regulation of post-embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0048581 negative regulation of post-embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0048583 regulation of response to stimulus IEP Predict GO terms from Neighborhoods
BP GO:0048585 negative regulation of response to stimulus IEP Predict GO terms from Neighborhoods
BP GO:0048587 regulation of short-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048592 eye morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050688 regulation of defense response to virus IEP Predict GO terms from Neighborhoods
BP GO:0050691 regulation of defense response to virus by host IEP Predict GO terms from Neighborhoods
BP GO:0050920 regulation of chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0050922 negative regulation of chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0050994 regulation of lipid catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0051019 mitogen-activated protein kinase binding IEP Predict GO terms from Neighborhoods
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051246 regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051248 negative regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051384 response to glucocorticoid IEP Predict GO terms from Neighborhoods
BP GO:0051445 regulation of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051447 negative regulation of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051591 response to cAMP IEP Predict GO terms from Neighborhoods
BP GO:0051592 response to calcium ion IEP Predict GO terms from Neighborhoods
BP GO:0061061 muscle structure development IEP Predict GO terms from Neighborhoods
MF GO:0061630 ubiquitin protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0061647 histone H3-K9 modification IEP Predict GO terms from Neighborhoods
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0061982 meiosis I cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0061988 karyosome formation IEP Predict GO terms from Neighborhoods
BP GO:0070076 histone lysine demethylation IEP Predict GO terms from Neighborhoods
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0070193 synaptonemal complex organization IEP Predict GO terms from Neighborhoods
BP GO:0070262 peptidyl-serine dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0070302 regulation of stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0070303 negative regulation of stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0070372 regulation of ERK1 and ERK2 cascade IEP Predict GO terms from Neighborhoods
BP GO:0070373 negative regulation of ERK1 and ERK2 cascade IEP Predict GO terms from Neighborhoods
CC GO:0070822 Sin3-type complex IEP Predict GO terms from Neighborhoods
BP GO:0070988 demethylation IEP Predict GO terms from Neighborhoods
BP GO:0071275 cellular response to aluminum ion IEP Predict GO terms from Neighborhoods
BP GO:0071310 cellular response to organic substance IEP Predict GO terms from Neighborhoods
BP GO:0071318 cellular response to ATP IEP Predict GO terms from Neighborhoods
BP GO:0071407 cellular response to organic cyclic compound IEP Predict GO terms from Neighborhoods
BP GO:0071446 cellular response to salicylic acid stimulus IEP Predict GO terms from Neighborhoods
MF GO:0071558 histone H3-tri/di-methyl-lysine-27 demethylase activity IEP Predict GO terms from Neighborhoods
BP GO:0071675 regulation of mononuclear cell migration IEP Predict GO terms from Neighborhoods
BP GO:0071676 negative regulation of mononuclear cell migration IEP Predict GO terms from Neighborhoods
BP GO:0071901 negative regulation of protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0090025 regulation of monocyte chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0090027 negative regulation of monocyte chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0090231 regulation of spindle checkpoint IEP Predict GO terms from Neighborhoods
BP GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint IEP Predict GO terms from Neighborhoods
BP GO:0090596 sensory organ morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0090615 mitochondrial mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0090617 mitochondrial mRNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0106167 extracellular ATP signaling IEP Predict GO terms from Neighborhoods
MF GO:0140457 protein demethylase activity IEP Predict GO terms from Neighborhoods
BP GO:1900367 positive regulation of defense response to insect IEP Predict GO terms from Neighborhoods
BP GO:1900744 regulation of p38MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:1901976 regulation of cell cycle checkpoint IEP Predict GO terms from Neighborhoods
BP GO:1901983 regulation of protein acetylation IEP Predict GO terms from Neighborhoods
BP GO:1901984 negative regulation of protein acetylation IEP Predict GO terms from Neighborhoods
BP GO:1902065 response to L-glutamate IEP Predict GO terms from Neighborhoods
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Predict GO terms from Neighborhoods
CC GO:1902493 acetyltransferase complex IEP Predict GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Predict GO terms from Neighborhoods
BP GO:1903046 meiotic cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:1903504 regulation of mitotic spindle checkpoint IEP Predict GO terms from Neighborhoods
BP GO:1903753 negative regulation of p38MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:1905818 regulation of chromosome separation IEP Predict GO terms from Neighborhoods
MF GO:1990439 MAP kinase serine/threonine phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:1990868 response to chemokine IEP Predict GO terms from Neighborhoods
BP GO:1990869 cellular response to chemokine IEP Predict GO terms from Neighborhoods
BP GO:2000026 regulation of multicellular organismal development IEP Predict GO terms from Neighborhoods
BP GO:2000028 regulation of photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:2000146 negative regulation of cell motility IEP Predict GO terms from Neighborhoods
BP GO:2000241 regulation of reproductive process IEP Predict GO terms from Neighborhoods
BP GO:2000242 negative regulation of reproductive process IEP Predict GO terms from Neighborhoods
BP GO:2000278 regulation of DNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000279 negative regulation of DNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000736 regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:2000737 negative regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:2000756 regulation of peptidyl-lysine acetylation IEP Predict GO terms from Neighborhoods
BP GO:2000757 negative regulation of peptidyl-lysine acetylation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 252 286
IPR002885 Pentatricopeptide_repeat 182 215
IPR002885 Pentatricopeptide_repeat 217 250
IPR002885 Pentatricopeptide_repeat 354 387
IPR002885 Pentatricopeptide_repeat 154 182
IPR002885 Pentatricopeptide_repeat 426 449
IPR002885 Pentatricopeptide_repeat 325 345
IPR002885 Pentatricopeptide_repeat 154 181
IPR002885 Pentatricopeptide_repeat 83 108
IPR033443 PPR_long 195 296
IPR002885 Pentatricopeptide_repeat 350 398
No external refs found!