SOLTUB.AGRIA.G00000025687


Description : RAB GTPase A1F


Gene families : OG_02_0006392 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000025687
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_169


Type GO Term Name Evidence Source
BP GO:0000911 cytokinesis by cell plate formation IEA AHRD
BP GO:0001881 receptor recycling IEA AHRD
MF GO:0003925 G protein activity IEA AHRD
MF GO:0005525 GTP binding IEA AHRD
CC GO:0005634 nucleus IEA AHRD
CC GO:0005773 vacuole IEA AHRD
CC GO:0005829 cytosol IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
BP GO:0006886 intracellular protein transport IEA AHRD
CC GO:0009504 cell plate IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
BP GO:0009733 response to auxin IEA AHRD
MF GO:0019003 GDP binding IEA AHRD
CC GO:0030670 phagocytic vesicle membrane IEA AHRD
MF GO:0031489 myosin V binding IEA AHRD
CC GO:0031901 early endosome membrane IEA AHRD
BP GO:0032402 melanosome transport IEA AHRD
CC GO:0032588 trans-Golgi network membrane IEA AHRD
BP GO:0033572 transferrin transport IEA AHRD
BP GO:0035773 insulin secretion involved in cellular response to glucose stimulus IEA AHRD
BP GO:0042546 cell wall biogenesis IEA AHRD
BP GO:0044070 regulation of anion transport IEA AHRD
BP GO:0045054 constitutive secretory pathway IEA AHRD
BP GO:0045055 regulated exocytosis IEA AHRD
BP GO:0046686 response to cadmium ion IEA AHRD
CC GO:0055038 recycling endosome membrane IEA AHRD
BP GO:0071468 cellular response to acidic pH IEA AHRD
BP GO:0090150 establishment of protein localization to membrane IEA AHRD
CC GO:0098993 anchored component of synaptic vesicle membrane IEA AHRD
BP GO:0150093 amyloid-beta clearance by transcytosis IEA AHRD
BP GO:2000008 regulation of protein localization to cell surface IEA AHRD
BP GO:2001135 regulation of endocytic recycling IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predict GO terms from Neighborhoods
BP GO:0000226 microtubule cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0000266 mitochondrial fission IEP Predict GO terms from Neighborhoods
BP GO:0001578 microtubule bundle formation IEP Predict GO terms from Neighborhoods
BP GO:0002028 regulation of sodium ion transport IEP Predict GO terms from Neighborhoods
BP GO:0002090 regulation of receptor internalization IEP Predict GO terms from Neighborhoods
BP GO:0003400 regulation of COPII vesicle coating IEP Predict GO terms from Neighborhoods
MF GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity IEP Predict GO terms from Neighborhoods
MF GO:0004664 prephenate dehydratase activity IEP Predict GO terms from Neighborhoods
MF GO:0004674 protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0005507 copper ion binding IEP Predict GO terms from Neighborhoods
CC GO:0005618 cell wall IEP Predict GO terms from Neighborhoods
CC GO:0005740 mitochondrial envelope IEP Predict GO terms from Neighborhoods
CC GO:0005768 endosome IEP Predict GO terms from Neighborhoods
CC GO:0005798 Golgi-associated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0005840 ribosome IEP Predict GO terms from Neighborhoods
BP GO:0005996 monosaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006006 glucose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006094 gluconeogenesis IEP Predict GO terms from Neighborhoods
BP GO:0006471 protein ADP-ribosylation IEP Predict GO terms from Neighborhoods
BP GO:0006558 L-phenylalanine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006570 tyrosine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006571 tyrosine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006696 ergosterol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006878 cellular copper ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0006900 vesicle budding from membrane IEP Predict GO terms from Neighborhoods
BP GO:0006959 humoral immune response IEP Predict GO terms from Neighborhoods
BP GO:0006998 nuclear envelope organization IEP Predict GO terms from Neighborhoods
BP GO:0007006 mitochondrial membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0007010 cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0007623 circadian rhythm IEP Predict GO terms from Neighborhoods
MF GO:0008017 microtubule binding IEP Predict GO terms from Neighborhoods
BP GO:0008204 ergosterol metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008479 queuine tRNA-ribosyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predict GO terms from Neighborhoods
BP GO:0009225 nucleotide-sugar metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009555 pollen development IEP Predict GO terms from Neighborhoods
BP GO:0009832 plant-type cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010031 circumnutation IEP Predict GO terms from Neighborhoods
BP GO:0010058 regulation of atrichoblast fate specification IEP Predict GO terms from Neighborhoods
BP GO:0010059 positive regulation of atrichoblast fate specification IEP Predict GO terms from Neighborhoods
BP GO:0010061 regulation of trichoblast fate specification IEP Predict GO terms from Neighborhoods
BP GO:0010063 positive regulation of trichoblast fate specification IEP Predict GO terms from Neighborhoods
BP GO:0010071 root meristem specification IEP Predict GO terms from Neighborhoods
BP GO:0010244 response to low fluence blue light stimulus by blue low-fluence system IEP Predict GO terms from Neighborhoods
BP GO:0010310 regulation of hydrogen peroxide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010324 membrane invagination IEP Predict GO terms from Neighborhoods
BP GO:0010455 positive regulation of cell fate commitment IEP Predict GO terms from Neighborhoods
BP GO:0010726 positive regulation of hydrogen peroxide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010765 positive regulation of sodium ion transport IEP Predict GO terms from Neighborhoods
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015631 tubulin binding IEP Predict GO terms from Neighborhoods
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predict GO terms from Neighborhoods
MF GO:0016004 phospholipase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0016051 carbohydrate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016126 sterol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016129 phytosteroid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0016759 cellulose synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predict GO terms from Neighborhoods
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predict GO terms from Neighborhoods
MF GO:0016853 isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0016866 intramolecular transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0017014 protein nitrosylation IEP Predict GO terms from Neighborhoods
BP GO:0017158 regulation of calcium ion-dependent exocytosis IEP Predict GO terms from Neighborhoods
BP GO:0018119 peptidyl-cysteine S-nitrosylation IEP Predict GO terms from Neighborhoods
BP GO:0018198 peptidyl-cysteine modification IEP Predict GO terms from Neighborhoods
BP GO:0019319 hexose biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019321 pentose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019322 pentose biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019566 arabinose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019567 arabinose biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019730 antimicrobial humoral response IEP Predict GO terms from Neighborhoods
MF GO:0019828 aspartic-type endopeptidase inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0019904 protein domain specific binding IEP Predict GO terms from Neighborhoods
CC GO:0022626 cytosolic ribosome IEP Predict GO terms from Neighborhoods
CC GO:0030017 sarcomere IEP Predict GO terms from Neighborhoods
CC GO:0030117 membrane coat IEP Predict GO terms from Neighborhoods
CC GO:0030120 vesicle coat IEP Predict GO terms from Neighborhoods
CC GO:0030127 COPII vesicle coat IEP Predict GO terms from Neighborhoods
CC GO:0030137 COPI-coated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0030312 external encapsulating structure IEP Predict GO terms from Neighborhoods
BP GO:0031001 response to brefeldin A IEP Predict GO terms from Neighborhoods
CC GO:0031226 intrinsic component of plasma membrane IEP Predict GO terms from Neighborhoods
CC GO:0031252 cell leading edge IEP Predict GO terms from Neighborhoods
BP GO:0032388 positive regulation of intracellular transport IEP Predict GO terms from Neighborhoods
BP GO:0032479 regulation of type I interferon production IEP Predict GO terms from Neighborhoods
BP GO:0032481 positive regulation of type I interferon production IEP Predict GO terms from Neighborhoods
BP GO:0032506 cytokinetic process IEP Predict GO terms from Neighborhoods
BP GO:0033356 UDP-L-arabinose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034315 regulation of Arp2/3 complex-mediated actin nucleation IEP Predict GO terms from Neighborhoods
BP GO:0034341 response to interferon-gamma IEP Predict GO terms from Neighborhoods
BP GO:0034377 plasma lipoprotein particle assembly IEP Predict GO terms from Neighborhoods
BP GO:0034379 very-low-density lipoprotein particle assembly IEP Predict GO terms from Neighborhoods
MF GO:0035605 peptidyl-cysteine S-nitrosylase activity IEP Predict GO terms from Neighborhoods
BP GO:0035606 peptidyl-cysteine S-trans-nitrosylation IEP Predict GO terms from Neighborhoods
BP GO:0036090 cleavage furrow ingression IEP Predict GO terms from Neighborhoods
BP GO:0042660 positive regulation of cell fate specification IEP Predict GO terms from Neighborhoods
MF GO:0042802 identical protein binding IEP Predict GO terms from Neighborhoods
BP GO:0043122 regulation of I-kappaB kinase/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:0043412 macromolecule modification IEP Predict GO terms from Neighborhoods
MF GO:0043891 glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity IEP Predict GO terms from Neighborhoods
BP GO:0044107 cellular alcohol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044108 cellular alcohol biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0044232 organelle membrane contact site IEP Predict GO terms from Neighborhoods
CC GO:0044233 mitochondria-associated endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
BP GO:0044283 small molecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045921 positive regulation of exocytosis IEP Predict GO terms from Neighborhoods
BP GO:0045956 positive regulation of calcium ion-dependent exocytosis IEP Predict GO terms from Neighborhoods
BP GO:0046364 monosaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0046658 anchored component of plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0046677 response to antibiotic IEP Predict GO terms from Neighborhoods
MF GO:0047769 arogenate dehydratase activity IEP Predict GO terms from Neighborhoods
BP GO:0048229 gametophyte development IEP Predict GO terms from Neighborhoods
BP GO:0050714 positive regulation of protein secretion IEP Predict GO terms from Neighborhoods
BP GO:0050805 negative regulation of synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0050879 multicellular organismal movement IEP Predict GO terms from Neighborhoods
BP GO:0051050 positive regulation of transport IEP Predict GO terms from Neighborhoods
BP GO:0051125 regulation of actin nucleation IEP Predict GO terms from Neighborhoods
BP GO:0051222 positive regulation of protein transport IEP Predict GO terms from Neighborhoods
BP GO:0051223 regulation of protein transport IEP Predict GO terms from Neighborhoods
BP GO:0051402 neuron apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0051511 negative regulation of unidimensional cell growth IEP Predict GO terms from Neighborhoods
BP GO:0051873 killing by host of symbiont cells IEP Predict GO terms from Neighborhoods
MF GO:0052691 UDP-arabinopyranose mutase activity IEP Predict GO terms from Neighborhoods
BP GO:0055070 copper ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055108 Golgi to transport vesicle transport IEP Predict GO terms from Neighborhoods
MF GO:0060229 lipase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0060292 long-term synaptic depression IEP Predict GO terms from Neighborhoods
BP GO:0060628 regulation of ER to Golgi vesicle-mediated transport IEP Predict GO terms from Neighborhoods
BP GO:0060998 regulation of dendritic spine development IEP Predict GO terms from Neighborhoods
BP GO:0060999 positive regulation of dendritic spine development IEP Predict GO terms from Neighborhoods
BP GO:0061024 membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0061844 antimicrobial humoral immune response mediated by antimicrobial peptide IEP Predict GO terms from Neighborhoods
BP GO:0065005 protein-lipid complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0070142 synaptic vesicle budding IEP Predict GO terms from Neighborhoods
BP GO:0070201 regulation of establishment of protein localization IEP Predict GO terms from Neighborhoods
BP GO:0070861 regulation of protein exit from endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0070863 positive regulation of protein exit from endoplasmic reticulum IEP Predict GO terms from Neighborhoods
CC GO:0070971 endoplasmic reticulum exit site IEP Predict GO terms from Neighborhoods
BP GO:0070997 neuron death IEP Predict GO terms from Neighborhoods
BP GO:0071323 cellular response to chitin IEP Predict GO terms from Neighborhoods
BP GO:0071346 cellular response to interferon-gamma IEP Predict GO terms from Neighborhoods
BP GO:0071369 cellular response to ethylene stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071825 protein-lipid complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0071827 plasma lipoprotein particle organization IEP Predict GO terms from Neighborhoods
BP GO:0080144 amino acid homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0090113 regulation of ER to Golgi vesicle-mediated transport by GTP hydrolysis IEP Predict GO terms from Neighborhoods
BP GO:0090421 embryonic meristem initiation IEP Predict GO terms from Neighborhoods
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0097061 dendritic spine organization IEP Predict GO terms from Neighborhoods
BP GO:0097212 lysosomal membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0097384 cellular lipid biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0097452 GAIT complex IEP Predict GO terms from Neighborhoods
MF GO:0097718 disordered domain specific binding IEP Predict GO terms from Neighborhoods
BP GO:0098586 cellular response to virus IEP Predict GO terms from Neighborhoods
BP GO:0098974 postsynaptic actin cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0099024 plasma membrane invagination IEP Predict GO terms from Neighborhoods
BP GO:0099173 postsynapse organization IEP Predict GO terms from Neighborhoods
BP GO:0099188 postsynaptic cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0101030 tRNA-guanine transglycosylation IEP Predict GO terms from Neighborhoods
BP GO:0106027 neuron projection organization IEP Predict GO terms from Neighborhoods
BP GO:1900424 regulation of defense response to bacterium IEP Predict GO terms from Neighborhoods
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902305 regulation of sodium ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1902307 positive regulation of sodium ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1902410 mitotic cytokinetic process IEP Predict GO terms from Neighborhoods
BP GO:1902533 positive regulation of intracellular signal transduction IEP Predict GO terms from Neighborhoods
BP GO:1902653 secondary alcohol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902822 regulation of late endosome to lysosome transport IEP Predict GO terms from Neighborhoods
BP GO:1902824 positive regulation of late endosome to lysosome transport IEP Predict GO terms from Neighborhoods
BP GO:1902953 positive regulation of ER to Golgi vesicle-mediated transport IEP Predict GO terms from Neighborhoods
BP GO:1903305 regulation of regulated secretory pathway IEP Predict GO terms from Neighborhoods
BP GO:1903307 positive regulation of regulated secretory pathway IEP Predict GO terms from Neighborhoods
BP GO:1903335 regulation of vacuolar transport IEP Predict GO terms from Neighborhoods
BP GO:1903337 positive regulation of vacuolar transport IEP Predict GO terms from Neighborhoods
BP GO:1903725 regulation of phospholipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903829 positive regulation of protein localization IEP Predict GO terms from Neighborhoods
BP GO:1903888 regulation of plant epidermal cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1903890 positive regulation of plant epidermal cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1904951 positive regulation of establishment of protein localization IEP Predict GO terms from Neighborhoods
BP GO:1990386 mitotic cleavage furrow ingression IEP Predict GO terms from Neighborhoods
MF GO:1990583 phospholipase D activator activity IEP Predict GO terms from Neighborhoods
BP GO:2000067 regulation of root morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:2000379 positive regulation of reactive oxygen species metabolic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001806 Small_GTPase 15 175
IPR005225 Small_GTP-bd_dom 12 170
IPR027417 P-loop_NTPase 9 179
No external refs found!