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Description : YTH domain-containing family protein
Gene families : OG_02_0003074 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000026493 | |
Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_244 |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | IEA | AHRD |
BP | GO:0001701 | in utero embryonic development | IEA | AHRD |
BP | GO:0002682 | regulation of immune system process | None | Extended |
BP | GO:0002684 | positive regulation of immune system process | None | Extended |
BP | GO:0002831 | regulation of response to biotic stimulus | None | Extended |
BP | GO:0002833 | positive regulation of response to biotic stimulus | None | Extended |
BP | GO:0003006 | developmental process involved in reproduction | None | Extended |
BP | GO:0003008 | system process | None | Extended |
MF | GO:0003674 | molecular_function | None | Extended |
MF | GO:0003676 | nucleic acid binding | None | Extended |
MF | GO:0003723 | RNA binding | None | Extended |
MF | GO:0003724 | RNA helicase activity | None | Extended |
MF | GO:0003729 | mRNA binding | IEA | AHRD |
MF | GO:0003824 | catalytic activity | None | Extended |
MF | GO:0004386 | helicase activity | None | Extended |
MF | GO:0004518 | nuclease activity | None | Extended |
MF | GO:0004519 | endonuclease activity | None | Extended |
MF | GO:0004521 | endoribonuclease activity | IEA | AHRD |
MF | GO:0004540 | ribonuclease activity | None | Extended |
MF | GO:0005488 | binding | None | Extended |
MF | GO:0005515 | protein binding | None | Extended |
MF | GO:0005516 | calmodulin binding | IEA | AHRD |
CC | GO:0005575 | cellular_component | None | Extended |
CC | GO:0005783 | endoplasmic reticulum | IEA | AHRD |
BP | GO:0006376 | mRNA splice site selection | IEA | AHRD |
BP | GO:0006417 | regulation of translation | None | Extended |
BP | GO:0006950 | response to stress | None | Extended |
BP | GO:0006979 | response to oxidative stress | IEA | AHRD |
BP | GO:0006996 | organelle organization | None | Extended |
BP | GO:0007275 | multicellular organism development | None | Extended |
BP | GO:0007281 | germ cell development | None | Extended |
BP | GO:0007286 | spermatid development | IEA | AHRD |
BP | GO:0007346 | regulation of mitotic cell cycle | None | Extended |
BP | GO:0007530 | sex determination | IEA | AHRD |
BP | GO:0007549 | dosage compensation | None | Extended |
BP | GO:0007610 | behavior | None | Extended |
BP | GO:0007611 | learning or memory | IEA | AHRD |
BP | GO:0008150 | biological_process | None | Extended |
MF | GO:0008186 | ATP-dependent activity, acting on RNA | None | Extended |
BP | GO:0009048 | dosage compensation by inactivation of X chromosome | IEA | AHRD |
BP | GO:0009653 | anatomical structure morphogenesis | IEA | AHRD |
BP | GO:0009790 | embryo development | None | Extended |
BP | GO:0009792 | embryo development ending in birth or egg hatching | None | Extended |
BP | GO:0009889 | regulation of biosynthetic process | None | Extended |
BP | GO:0009891 | positive regulation of biosynthetic process | None | Extended |
BP | GO:0009893 | positive regulation of metabolic process | None | Extended |
BP | GO:0009894 | regulation of catabolic process | None | Extended |
BP | GO:0009966 | regulation of signal transduction | None | Extended |
BP | GO:0009968 | negative regulation of signal transduction | IEA | AHRD |
BP | GO:0009987 | cellular process | None | Extended |
BP | GO:0010033 | response to organic substance | None | Extended |
BP | GO:0010363 | regulation of plant-type hypersensitive response | None | Extended |
BP | GO:0010468 | regulation of gene expression | None | Extended |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | None | Extended |
BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | None | Extended |
BP | GO:0010604 | positive regulation of macromolecule metabolic process | None | Extended |
BP | GO:0010608 | post-transcriptional regulation of gene expression | None | Extended |
BP | GO:0010628 | positive regulation of gene expression | None | Extended |
BP | GO:0010646 | regulation of cell communication | None | Extended |
BP | GO:0010648 | negative regulation of cell communication | None | Extended |
BP | GO:0010941 | regulation of cell death | None | Extended |
BP | GO:0010942 | positive regulation of cell death | None | Extended |
BP | GO:0016043 | cellular component organization | None | Extended |
CC | GO:0016604 | nuclear body | None | Extended |
CC | GO:0016607 | nuclear speck | IEA | AHRD |
MF | GO:0016787 | hydrolase activity | None | Extended |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | None | Extended |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | None | Extended |
BP | GO:0019222 | regulation of metabolic process | None | Extended |
MF | GO:0019899 | enzyme binding | None | Extended |
BP | GO:0022402 | cell cycle process | None | Extended |
BP | GO:0022412 | cellular process involved in reproduction in multicellular organism | None | Extended |
BP | GO:0022414 | reproductive process | None | Extended |
BP | GO:0022605 | mammalian oogenesis stage | None | Extended |
BP | GO:0022607 | cellular component assembly | None | Extended |
BP | GO:0022618 | ribonucleoprotein complex assembly | None | Extended |
BP | GO:0023051 | regulation of signaling | None | Extended |
BP | GO:0023057 | negative regulation of signaling | None | Extended |
BP | GO:0030155 | regulation of cell adhesion | IEA | AHRD |
BP | GO:0031323 | regulation of cellular metabolic process | None | Extended |
BP | GO:0031325 | positive regulation of cellular metabolic process | None | Extended |
BP | GO:0031326 | regulation of cellular biosynthetic process | None | Extended |
BP | GO:0031328 | positive regulation of cellular biosynthetic process | None | Extended |
BP | GO:0031329 | regulation of cellular catabolic process | None | Extended |
BP | GO:0031347 | regulation of defense response | None | Extended |
BP | GO:0031349 | positive regulation of defense response | None | Extended |
BP | GO:0031440 | regulation of mRNA 3'-end processing | None | Extended |
BP | GO:0032101 | regulation of response to external stimulus | None | Extended |
BP | GO:0032103 | positive regulation of response to external stimulus | None | Extended |
BP | GO:0032501 | multicellular organismal process | None | Extended |
BP | GO:0032502 | developmental process | None | Extended |
BP | GO:0034052 | positive regulation of plant-type hypersensitive response | IEA | AHRD |
BP | GO:0034097 | response to cytokine | None | Extended |
BP | GO:0034248 | regulation of cellular amide metabolic process | None | Extended |
BP | GO:0034250 | positive regulation of cellular amide metabolic process | None | Extended |
MF | GO:0034458 | 3'-5' RNA helicase activity | IEA | AHRD |
BP | GO:0034612 | response to tumor necrosis factor | IEA | AHRD |
CC | GO:0035770 | ribonucleoprotein granule | None | Extended |
MF | GO:0036002 | pre-mRNA binding | IEA | AHRD |
CC | GO:0036464 | cytoplasmic ribonucleoprotein granule | IEA | AHRD |
BP | GO:0040012 | regulation of locomotion | IEA | AHRD |
BP | GO:0040029 | epigenetic regulation of gene expression | None | Extended |
BP | GO:0042221 | response to chemical | None | Extended |
BP | GO:0043009 | chordate embryonic development | None | Extended |
BP | GO:0043067 | regulation of programmed cell death | None | Extended |
BP | GO:0043068 | positive regulation of programmed cell death | None | Extended |
CC | GO:0043226 | organelle | None | Extended |
CC | GO:0043227 | membrane-bounded organelle | None | Extended |
CC | GO:0043228 | non-membrane-bounded organelle | None | Extended |
CC | GO:0043229 | intracellular organelle | None | Extended |
CC | GO:0043231 | intracellular membrane-bounded organelle | None | Extended |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | None | Extended |
BP | GO:0043484 | regulation of RNA splicing | None | Extended |
BP | GO:0043487 | regulation of RNA stability | None | Extended |
BP | GO:0043488 | regulation of mRNA stability | IEA | AHRD |
BP | GO:0043903 | regulation of biological process involved in symbiotic interaction | None | Extended |
BP | GO:0043933 | protein-containing complex organization | None | Extended |
BP | GO:0044403 | biological process involved in symbiotic interaction | None | Extended |
BP | GO:0044419 | biological process involved in interspecies interaction between organisms | None | Extended |
BP | GO:0044788 | modulation by host of viral process | None | Extended |
BP | GO:0044794 | positive regulation by host of viral process | None | Extended |
BP | GO:0044827 | modulation by host of viral genome replication | None | Extended |
BP | GO:0044829 | positive regulation by host of viral genome replication | IEA | AHRD |
BP | GO:0045088 | regulation of innate immune response | None | Extended |
BP | GO:0045089 | positive regulation of innate immune response | None | Extended |
BP | GO:0045595 | regulation of cell differentiation | None | Extended |
BP | GO:0045596 | negative regulation of cell differentiation | IEA | AHRD |
BP | GO:0045727 | positive regulation of translation | IEA | AHRD |
BP | GO:0045786 | negative regulation of cell cycle | None | Extended |
BP | GO:0045787 | positive regulation of cell cycle | None | Extended |
BP | GO:0045930 | negative regulation of mitotic cell cycle | None | Extended |
BP | GO:0048024 | regulation of mRNA splicing, via spliceosome | None | Extended |
BP | GO:0048160 | primary follicle stage | IEA | AHRD |
BP | GO:0048468 | cell development | None | Extended |
BP | GO:0048518 | positive regulation of biological process | None | Extended |
BP | GO:0048519 | negative regulation of biological process | None | Extended |
BP | GO:0048522 | positive regulation of cellular process | None | Extended |
BP | GO:0048523 | negative regulation of cellular process | None | Extended |
BP | GO:0048583 | regulation of response to stimulus | None | Extended |
BP | GO:0048584 | positive regulation of response to stimulus | None | Extended |
BP | GO:0048585 | negative regulation of response to stimulus | None | Extended |
BP | GO:0048599 | oocyte development | IEA | AHRD |
BP | GO:0048609 | multicellular organismal reproductive process | None | Extended |
BP | GO:0048856 | anatomical structure development | None | Extended |
BP | GO:0048869 | cellular developmental process | None | Extended |
BP | GO:0050684 | regulation of mRNA processing | None | Extended |
BP | GO:0050767 | regulation of neurogenesis | IEA | AHRD |
BP | GO:0050776 | regulation of immune response | None | Extended |
BP | GO:0050778 | positive regulation of immune response | None | Extended |
BP | GO:0050789 | regulation of biological process | None | Extended |
BP | GO:0050793 | regulation of developmental process | None | Extended |
BP | GO:0050794 | regulation of cellular process | None | Extended |
BP | GO:0050877 | nervous system process | None | Extended |
BP | GO:0050890 | cognition | None | Extended |
BP | GO:0050896 | response to stimulus | None | Extended |
BP | GO:0051093 | negative regulation of developmental process | None | Extended |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | None | Extended |
BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | None | Extended |
BP | GO:0051239 | regulation of multicellular organismal process | None | Extended |
BP | GO:0051246 | regulation of protein metabolic process | None | Extended |
BP | GO:0051247 | positive regulation of protein metabolic process | None | Extended |
BP | GO:0051252 | regulation of RNA metabolic process | None | Extended |
BP | GO:0051270 | obsolete regulation of cellular component movement | IEA | AHRD |
BP | GO:0051301 | cell division | IEA | AHRD |
BP | GO:0051445 | regulation of meiotic cell cycle | None | Extended |
BP | GO:0051446 | positive regulation of meiotic cell cycle | None | Extended |
BP | GO:0051702 | biological process involved in interaction with symbiont | None | Extended |
BP | GO:0051726 | regulation of cell cycle | None | Extended |
BP | GO:0051728 | cell cycle switching, mitotic to meiotic cell cycle | None | Extended |
BP | GO:0051729 | germline cell cycle switching, mitotic to meiotic cell cycle | IEA | AHRD |
BP | GO:0051851 | modulation by host of symbiont process | None | Extended |
BP | GO:0051960 | regulation of nervous system development | None | Extended |
BP | GO:0060184 | cell cycle switching | None | Extended |
BP | GO:0060255 | regulation of macromolecule metabolic process | None | Extended |
BP | GO:0060284 | regulation of cell development | None | Extended |
BP | GO:0061013 | regulation of mRNA catabolic process | None | Extended |
BP | GO:0065003 | protein-containing complex assembly | None | Extended |
BP | GO:0065007 | biological regulation | None | Extended |
BP | GO:0065008 | regulation of biological quality | None | Extended |
MF | GO:0070063 | RNA polymerase binding | IEA | AHRD |
BP | GO:0070555 | response to interleukin-1 | IEA | AHRD |
BP | GO:0070925 | organelle assembly | IEA | AHRD |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | None | Extended |
BP | GO:0071840 | cellular component organization or biogenesis | None | Extended |
BP | GO:0080090 | regulation of primary metabolic process | None | Extended |
BP | GO:0080134 | regulation of response to stress | None | Extended |
BP | GO:0080135 | regulation of cellular response to stress | None | Extended |
MF | GO:0097159 | organic cyclic compound binding | None | Extended |
CC | GO:0099080 | supramolecular complex | None | Extended |
BP | GO:0110104 | mRNA alternative polyadenylation | IEA | AHRD |
CC | GO:0110165 | cellular anatomical entity | None | Extended |
MF | GO:0140098 | catalytic activity, acting on RNA | None | Extended |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | None | Extended |
MF | GO:0140657 | ATP-dependent activity | None | Extended |
BP | GO:1900363 | regulation of mRNA polyadenylation | None | Extended |
MF | GO:1901363 | heterocyclic compound binding | None | Extended |
BP | GO:1903311 | regulation of mRNA metabolic process | None | Extended |
MF | GO:1990247 | N6-methyladenosine-containing RNA binding | IEA | AHRD |
BP | GO:2000026 | regulation of multicellular organismal development | None | Extended |
BP | GO:2000031 | regulation of salicylic acid mediated signaling pathway | IEA | AHRD |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | None | Extended |
BP | GO:2000241 | regulation of reproductive process | None | Extended |
BP | GO:2000243 | positive regulation of reproductive process | None | Extended |
BP | GO:2000736 | regulation of stem cell differentiation | IEA | AHRD |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000124 | SAGA complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000266 | mitochondrial fission | IEP | Predict GO terms from Neighborhoods |
MF | GO:0004045 | aminoacyl-tRNA hydrolase activity | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005669 | transcription factor TFIID complex | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005758 | mitochondrial intermembrane space | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005849 | mRNA cleavage factor complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006107 | oxaloacetate metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006305 | DNA alkylation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006306 | DNA methylation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006528 | asparagine metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006541 | glutamine metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006878 | cellular copper ion homeostasis | IEP | Predict GO terms from Neighborhoods |
MF | GO:0008168 | methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:0008202 | steroid metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0008535 | respiratory chain complex IV assembly | IEP | Predict GO terms from Neighborhoods |
MF | GO:0009007 | site-specific DNA-methyltransferase (adenine-specific) activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0009008 | DNA-methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:0009453 | energy taxis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0010257 | NADH dehydrogenase complex assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0010507 | negative regulation of autophagy | IEP | Predict GO terms from Neighborhoods |
BP | GO:0016073 | snRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
MF | GO:0016251 | RNA polymerase II general transcription initiation factor activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predict GO terms from Neighborhoods |
MF | GO:0016906 | sterol 3-beta-glucosyltransferase activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:0017004 | cytochrome complex assembly | IEP | Predict GO terms from Neighborhoods |
MF | GO:0017025 | TBP-class protein binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0018195 | peptidyl-arginine modification | IEP | Predict GO terms from Neighborhoods |
BP | GO:0019336 | phenol-containing compound catabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0030961 | peptidyl-arginine hydroxylation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0031154 | culmination involved in sorocarp development | IEP | Predict GO terms from Neighborhoods |
CC | GO:0031312 | extrinsic component of organelle membrane | IEP | Predict GO terms from Neighborhoods |
CC | GO:0031314 | extrinsic component of mitochondrial inner membrane | IEP | Predict GO terms from Neighborhoods |
CC | GO:0031970 | organelle envelope lumen | IEP | Predict GO terms from Neighborhoods |
CC | GO:0031974 | membrane-enclosed lumen | IEP | Predict GO terms from Neighborhoods |
CC | GO:0031983 | vesicle lumen | IEP | Predict GO terms from Neighborhoods |
BP | GO:0032259 | methylation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0032775 | DNA methylation on adenine | IEP | Predict GO terms from Neighborhoods |
BP | GO:0032981 | mitochondrial respiratory chain complex I assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0033108 | mitochondrial respiratory chain complex assembly | IEP | Predict GO terms from Neighborhoods |
CC | GO:0033276 | transcription factor TFTC complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0033617 | mitochondrial cytochrome c oxidase assembly | IEP | Predict GO terms from Neighborhoods |
MF | GO:0033759 | flavone synthase activity | IEP | Predict GO terms from Neighborhoods |
CC | GO:0034774 | secretory granule lumen | IEP | Predict GO terms from Neighborhoods |
MF | GO:0034785 | salicylate 5-hydroxylase activity | IEP | Predict GO terms from Neighborhoods |
CC | GO:0035145 | exon-exon junction complex | IEP | Predict GO terms from Neighborhoods |
CC | GO:0035580 | specific granule lumen | IEP | Predict GO terms from Neighborhoods |
BP | GO:0040031 | snRNA modification | IEP | Predict GO terms from Neighborhoods |
BP | GO:0042331 | phototaxis | IEP | Predict GO terms from Neighborhoods |
CC | GO:0043233 | organelle lumen | IEP | Predict GO terms from Neighborhoods |
BP | GO:0043605 | cellular amide catabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0046244 | salicylic acid catabolic process | IEP | Predict GO terms from Neighborhoods |
CC | GO:0046695 | SLIK (SAGA-like) complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0048443 | stamen development | IEP | Predict GO terms from Neighborhoods |
MF | GO:0050152 | omega-amidase activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:0051123 | RNA polymerase II preinitiation complex assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0051552 | flavone metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0051553 | flavone biosynthetic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0055070 | copper ion homeostasis | IEP | Predict GO terms from Neighborhoods |
CC | GO:0060205 | cytoplasmic vesicle lumen | IEP | Predict GO terms from Neighborhoods |
BP | GO:0062125 | regulation of mitochondrial gene expression | IEP | Predict GO terms from Neighborhoods |
CC | GO:0070013 | intracellular organelle lumen | IEP | Predict GO terms from Neighborhoods |
CC | GO:0070461 | SAGA-type complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0070897 | transcription preinitiation complex assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0090296 | regulation of mitochondrial DNA replication | IEP | Predict GO terms from Neighborhoods |
BP | GO:0120049 | snRNA (adenine-N6)-methylation | IEP | Predict GO terms from Neighborhoods |
MF | GO:0140223 | general transcription initiation factor activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0140296 | general transcription initiation factor binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:1901858 | regulation of mitochondrial DNA metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:1903108 | regulation of mitochondrial transcription | IEP | Predict GO terms from Neighborhoods |
BP | GO:1903259 | exon-exon junction complex disassembly | IEP | Predict GO terms from Neighborhoods |
CC | GO:1904724 | tertiary granule lumen | IEP | Predict GO terms from Neighborhoods |
CC | GO:1905368 | peptidase complex | IEP | Predict GO terms from Neighborhoods |
MF | GO:1990448 | exon-exon junction complex binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:2000209 | regulation of anoikis | IEP | Predict GO terms from Neighborhoods |
BP | GO:2000210 | positive regulation of anoikis | IEP | Predict GO terms from Neighborhoods |
BP | GO:2000811 | negative regulation of anoikis | IEP | Predict GO terms from Neighborhoods |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007275 | YTH_domain | 71 | 207 |
No external refs found! |
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