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  5. SOLTUB.AGRIA.G00000027012

SOLTUB.AGRIA.G00000027012


Description : 30S ribosomal S1


Gene families : OG_02_0006482 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000027012
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_27


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA AHRD
BP GO:0008610 lipid biosynthetic process IEA AHRD
BP GO:0044249 cellular biosynthetic process IEA AHRD
BP GO:0044255 cellular lipid metabolic process IEA AHRD
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0000086 G2/M transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
MF GO:0000166 nucleotide binding IEP Predict GO terms from Neighborhoods
CC GO:0000177 cytoplasmic exosome (RNase complex) IEP Predict GO terms from Neighborhoods
CC GO:0000178 exosome (RNase complex) IEP Predict GO terms from Neighborhoods
BP GO:0000278 mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0000966 RNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0000967 rRNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0001824 blastocyst development IEP Predict GO terms from Neighborhoods
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predict GO terms from Neighborhoods
BP GO:0003014 renal system process IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0004222 metalloendopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004518 nuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004521 endoribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0004822 isoleucine-tRNA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Predict GO terms from Neighborhoods
MF GO:0005525 GTP binding IEP Predict GO terms from Neighborhoods
MF GO:0005548 phospholipid transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0005971 ribonucleoside-diphosphate reductase complex IEP Predict GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006281 DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006413 translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predict GO terms from Neighborhoods
BP GO:0006428 isoleucyl-tRNA aminoacylation IEP Predict GO terms from Neighborhoods
BP GO:0006450 regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006753 nucleoside phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0007588 excretion IEP Predict GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Predict GO terms from Neighborhoods
MF GO:0008199 ferric iron binding IEP Predict GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008312 7S RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0008320 protein transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0008354 germ cell migration IEP Predict GO terms from Neighborhoods
MF GO:0008525 phosphatidylcholine transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0008559 ABC-type xenobiotic transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0008728 GTP diphosphokinase activity IEP Predict GO terms from Neighborhoods
MF GO:0008893 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0008995 ribonuclease E activity IEP Predict GO terms from Neighborhoods
MF GO:0008996 ribonuclease G activity IEP Predict GO terms from Neighborhoods
BP GO:0009112 nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009117 nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009138 pyrimidine nucleoside diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009259 ribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0009507 chloroplast IEP Predict GO terms from Neighborhoods
CC GO:0009526 plastid envelope IEP Predict GO terms from Neighborhoods
CC GO:0009532 plastid stroma IEP Predict GO terms from Neighborhoods
CC GO:0009536 plastid IEP Predict GO terms from Neighborhoods
CC GO:0009570 chloroplast stroma IEP Predict GO terms from Neighborhoods
BP GO:0009657 plastid organization IEP Predict GO terms from Neighborhoods
BP GO:0009658 chloroplast organization IEP Predict GO terms from Neighborhoods
CC GO:0009941 chloroplast envelope IEP Predict GO terms from Neighborhoods
BP GO:0010239 chloroplast mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0010343 singlet oxygen-mediated programmed cell death IEP Predict GO terms from Neighborhoods
BP GO:0010950 positive regulation of endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0010952 positive regulation of peptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0012501 programmed cell death IEP Predict GO terms from Neighborhoods
MF GO:0015399 primary active transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015440 ABC-type peptide transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015450 protein-transporting ATPase activity IEP Predict GO terms from Neighborhoods
MF GO:0015462 ABC-type protein transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0015914 phospholipid transport IEP Predict GO terms from Neighborhoods
BP GO:0015949 nucleobase-containing small molecule interconversion IEP Predict GO terms from Neighborhoods
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016464 chloroplast protein-transporting ATPase activity IEP Predict GO terms from Neighborhoods
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predict GO terms from Neighborhoods
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016778 diphosphotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016787 hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predict GO terms from Neighborhoods
MF GO:0016794 diphosphoric monoester hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predict GO terms from Neighborhoods
BP GO:0017038 protein import IEP Predict GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0017085 response to insecticide IEP Predict GO terms from Neighborhoods
MF GO:0017151 DEAD/H-box RNA helicase binding IEP Predict GO terms from Neighborhoods
MF GO:0019001 guanyl nucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0019693 ribose phosphate metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0022884 macromolecule transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0030983 mismatched DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0031154 culmination involved in sorocarp development IEP Predict GO terms from Neighborhoods
BP GO:0031288 sorocarp morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0031425 chloroplast RNA processing IEP Predict GO terms from Neighborhoods
CC GO:0031522 cell envelope Sec protein transport complex IEP Predict GO terms from Neighborhoods
CC GO:0031967 organelle envelope IEP Predict GO terms from Neighborhoods
CC GO:0031975 envelope IEP Predict GO terms from Neighborhoods
CC GO:0032300 mismatch repair complex IEP Predict GO terms from Neighborhoods
BP GO:0032368 regulation of lipid transport IEP Predict GO terms from Neighborhoods
BP GO:0032370 positive regulation of lipid transport IEP Predict GO terms from Neighborhoods
BP GO:0032411 positive regulation of transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0032414 positive regulation of ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0032508 DNA duplex unwinding IEP Predict GO terms from Neighborhoods
BP GO:0032543 mitochondrial translation IEP Predict GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0032561 guanyl ribonucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0032782 bile acid secretion IEP Predict GO terms from Neighborhoods
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034204 lipid translocation IEP Predict GO terms from Neighborhoods
CC GO:0034357 photosynthetic membrane IEP Predict GO terms from Neighborhoods
BP GO:0034471 ncRNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0034702 ion channel complex IEP Predict GO terms from Neighborhoods
CC GO:0034703 cation channel complex IEP Predict GO terms from Neighborhoods
CC GO:0034705 potassium channel complex IEP Predict GO terms from Neighborhoods
BP GO:0035627 ceramide transport IEP Predict GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predict GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Predict GO terms from Neighborhoods
BP GO:0036260 RNA capping IEP Predict GO terms from Neighborhoods
BP GO:0036473 cell death in response to oxidative stress IEP Predict GO terms from Neighborhoods
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0042644 chloroplast nucleoid IEP Predict GO terms from Neighborhoods
CC GO:0042646 plastid nucleoid IEP Predict GO terms from Neighborhoods
CC GO:0042651 thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0043038 amino acid activation IEP Predict GO terms from Neighborhoods
BP GO:0043039 tRNA aminoacylation IEP Predict GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Predict GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Predict GO terms from Neighborhoods
MF GO:0043169 cation binding IEP Predict GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043281 regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043462 regulation of ATP-dependent activity IEP Predict GO terms from Neighborhoods
BP GO:0043489 RNA stabilization IEP Predict GO terms from Neighborhoods
BP GO:0043952 protein transport by the Sec complex IEP Predict GO terms from Neighborhoods
BP GO:0044093 positive regulation of molecular function IEP Predict GO terms from Neighborhoods
BP GO:0044839 cell cycle G2/M phase transition IEP Predict GO terms from Neighborhoods
BP GO:0045332 phospholipid translocation IEP Predict GO terms from Neighborhoods
BP GO:0045472 response to ether IEP Predict GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0046581 intercellular canaliculus IEP Predict GO terms from Neighborhoods
BP GO:0046618 xenobiotic export from cell IEP Predict GO terms from Neighborhoods
MF GO:0046623 sphingolipid floppase activity IEP Predict GO terms from Neighborhoods
MF GO:0046624 sphingolipid transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0046717 acid secretion IEP Predict GO terms from Neighborhoods
MF GO:0046872 metal ion binding IEP Predict GO terms from Neighborhoods
BP GO:0048255 mRNA stabilization IEP Predict GO terms from Neighborhoods
BP GO:0051095 regulation of helicase activity IEP Predict GO terms from Neighborhoods
BP GO:0051259 protein complex oligomerization IEP Predict GO terms from Neighborhoods
BP GO:0051262 protein tetramerization IEP Predict GO terms from Neighborhoods
BP GO:0051289 protein homotetramerization IEP Predict GO terms from Neighborhoods
BP GO:0051290 protein heterotetramerization IEP Predict GO terms from Neighborhoods
BP GO:0051291 protein heterooligomerization IEP Predict GO terms from Neighborhoods
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predict GO terms from Neighborhoods
CC GO:0062157 mitochondrial ATP-gated potassium channel complex IEP Predict GO terms from Neighborhoods
BP GO:0070633 transepithelial transport IEP Predict GO terms from Neighborhoods
BP GO:0072089 stem cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0090554 phosphatidylcholine floppase activity IEP Predict GO terms from Neighborhoods
MF GO:0090555 phosphatidylethanolamine flippase activity IEP Predict GO terms from Neighborhoods
BP GO:0090615 mitochondrial mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0097035 regulation of membrane lipid distribution IEP Predict GO terms from Neighborhoods
BP GO:0097254 renal tubular secretion IEP Predict GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Predict GO terms from Neighborhoods
BP GO:0097468 programmed cell death in response to reactive oxygen species IEP Predict GO terms from Neighborhoods
MF GO:0099038 ceramide floppase activity IEP Predict GO terms from Neighborhoods
BP GO:0099039 sphingolipid translocation IEP Predict GO terms from Neighborhoods
BP GO:0099040 ceramide translocation IEP Predict GO terms from Neighborhoods
BP GO:0106074 aminoacyl-tRNA metabolism involved in translational fidelity IEP Predict GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Predict GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Predict GO terms from Neighborhoods
MF GO:0140303 intramembrane lipid transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0140318 protein transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0140326 ATPase-coupled intramembrane lipid transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0140327 flippase activity IEP Predict GO terms from Neighborhoods
MF GO:0140328 floppase activity IEP Predict GO terms from Neighborhoods
MF GO:0140333 glycerophospholipid flippase activity IEP Predict GO terms from Neighborhoods
MF GO:0140359 ABC-type transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Predict GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Predict GO terms from Neighborhoods
BP GO:0150104 transport across blood-brain barrier IEP Predict GO terms from Neighborhoods
BP GO:1901259 chloroplast rRNA processing IEP Predict GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Predict GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901529 positive regulation of anion channel activity IEP Predict GO terms from Neighborhoods
BP GO:1901557 response to fenofibrate IEP Predict GO terms from Neighborhoods
BP GO:1902280 regulation of RNA helicase activity IEP Predict GO terms from Neighborhoods
BP GO:1902369 negative regulation of RNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902373 negative regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
CC GO:1902495 transmembrane transporter complex IEP Predict GO terms from Neighborhoods
BP GO:1903008 organelle disassembly IEP Predict GO terms from Neighborhoods
BP GO:1903312 negative regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903793 positive regulation of anion transport IEP Predict GO terms from Neighborhoods
BP GO:1903961 positive regulation of anion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1904821 chloroplast disassembly IEP Predict GO terms from Neighborhoods
CC GO:1905354 exoribonuclease complex IEP Predict GO terms from Neighborhoods
BP GO:1905952 regulation of lipid localization IEP Predict GO terms from Neighborhoods
BP GO:1905954 positive regulation of lipid localization IEP Predict GO terms from Neighborhoods
CC GO:1990061 bacterial degradosome IEP Predict GO terms from Neighborhoods
BP GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:1990962 xenobiotic transport across blood-brain barrier IEP Predict GO terms from Neighborhoods
BP GO:2000116 regulation of cysteine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:2001056 positive regulation of cysteine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:2001225 regulation of chloride transport IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR012340 NA-bd_OB-fold 680 785
IPR003029 S1_domain 691 763
No external refs found!