SOLTUB.AGRIA.G00000028140


Description : DNA cross-link repair 1A


Gene families : OG_02_0016119 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000028140
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_19


Type GO Term Name Evidence Source
CC GO:0001650 fibrillar center IEA AHRD
BP GO:0002237 response to molecule of bacterial origin IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005856 cytoskeleton IEA AHRD
BP GO:0006289 nucleotide-excision repair IEA AHRD
BP GO:0006303 double-strand break repair via nonhomologous end joining IEA AHRD
BP GO:0006979 response to oxidative stress IEA AHRD
BP GO:0009409 response to cold IEA AHRD
BP GO:0009845 seed germination IEA AHRD
BP GO:0010225 response to UV-C IEA AHRD
BP GO:0015074 DNA integration IEA AHRD
BP GO:0016233 telomere capping IEA AHRD
MF GO:0035312 5'-3' exodeoxyribonuclease activity IEA AHRD
BP GO:0048316 seed development IEA AHRD
MF GO:0097159 organic cyclic compound binding IEA AHRD
MF GO:1901363 heterocyclic compound binding IEA AHRD
BP GO:1904975 response to bleomycin IEA AHRD
BP GO:2000685 positive regulation of cellular response to X-ray IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000429 carbon catabolite regulation of transcription from RNA polymerase II promoter IEP Predict GO terms from Neighborhoods
BP GO:0000436 carbon catabolite activation of transcription from RNA polymerase II promoter IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IEP Predict GO terms from Neighborhoods
MF GO:0000987 cis-regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0001101 response to acid chemical IEP Predict GO terms from Neighborhoods
MF GO:0001216 DNA-binding transcription activator activity IEP Predict GO terms from Neighborhoods
MF GO:0001217 DNA-binding transcription repressor activity IEP Predict GO terms from Neighborhoods
MF GO:0001221 transcription coregulator binding IEP Predict GO terms from Neighborhoods
MF GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific IEP Predict GO terms from Neighborhoods
BP GO:0002238 response to molecule of fungal origin IEP Predict GO terms from Neighborhoods
MF GO:0004506 squalene monooxygenase activity IEP Predict GO terms from Neighborhoods
CC GO:0005667 transcription regulator complex IEP Predict GO terms from Neighborhoods
BP GO:0006066 alcohol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006694 steroid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0007584 response to nutrient IEP Predict GO terms from Neighborhoods
MF GO:0008134 transcription factor binding IEP Predict GO terms from Neighborhoods
BP GO:0008202 steroid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0008203 cholesterol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0008204 ergosterol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009414 response to water deprivation IEP Predict GO terms from Neighborhoods
BP GO:0009415 response to water IEP Predict GO terms from Neighborhoods
BP GO:0009566 fertilization IEP Predict GO terms from Neighborhoods
BP GO:0009567 double fertilization forming a zygote and endosperm IEP Predict GO terms from Neighborhoods
BP GO:0009637 response to blue light IEP Predict GO terms from Neighborhoods
BP GO:0009738 abscisic acid-activated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009785 blue light signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009991 response to extracellular stimulus IEP Predict GO terms from Neighborhoods
BP GO:0010035 response to inorganic substance IEP Predict GO terms from Neighborhoods
BP GO:0010106 cellular response to iron ion starvation IEP Predict GO terms from Neighborhoods
BP GO:0010262 somatic embryogenesis IEP Predict GO terms from Neighborhoods
BP GO:0016125 sterol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016126 sterol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016128 phytosteroid metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0016602 CCAAT-binding factor complex IEP Predict GO terms from Neighborhoods
BP GO:0030447 filamentous growth IEP Predict GO terms from Neighborhoods
BP GO:0030522 intracellular receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0031099 regeneration IEP Predict GO terms from Neighborhoods
BP GO:0031667 response to nutrient levels IEP Predict GO terms from Neighborhoods
BP GO:0031670 cellular response to nutrient IEP Predict GO terms from Neighborhoods
CC GO:0031966 mitochondrial membrane IEP Predict GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Predict GO terms from Neighborhoods
BP GO:0033217 regulation of transcription from RNA polymerase II promoter in response to iron ion starvation IEP Predict GO terms from Neighborhoods
BP GO:0034389 lipid droplet organization IEP Predict GO terms from Neighborhoods
BP GO:0040034 regulation of development, heterochronic IEP Predict GO terms from Neighborhoods
BP GO:0042214 terpene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042542 response to hydrogen peroxide IEP Predict GO terms from Neighborhoods
BP GO:0042594 response to starvation IEP Predict GO terms from Neighborhoods
BP GO:0043457 regulation of cellular respiration IEP Predict GO terms from Neighborhoods
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predict GO terms from Neighborhoods
BP GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0043620 regulation of DNA-templated transcription in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0044107 cellular alcohol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044182 filamentous growth of a population of unicellular organisms IEP Predict GO terms from Neighborhoods
BP GO:0045990 carbon catabolite regulation of transcription IEP Predict GO terms from Neighborhoods
BP GO:0045991 carbon catabolite activation of transcription IEP Predict GO terms from Neighborhoods
BP GO:0046246 terpene biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0048506 regulation of timing of meristematic phase transition IEP Predict GO terms from Neighborhoods
BP GO:0048509 regulation of meristem development IEP Predict GO terms from Neighborhoods
BP GO:0048510 regulation of timing of transition from vegetative to reproductive phase IEP Predict GO terms from Neighborhoods
MF GO:0050660 flavin adenine dinucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0055046 microgametogenesis IEP Predict GO terms from Neighborhoods
MF GO:0060090 molecular adaptor activity IEP Predict GO terms from Neighborhoods
BP GO:0070925 organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:0071478 cellular response to radiation IEP Predict GO terms from Neighborhoods
BP GO:0071482 cellular response to light stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071483 cellular response to blue light IEP Predict GO terms from Neighborhoods
BP GO:0071731 response to nitric oxide IEP Predict GO terms from Neighborhoods
MF GO:0071949 FAD binding IEP Predict GO terms from Neighborhoods
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Predict GO terms from Neighborhoods
MF GO:0106260 DNA-DNA tethering activity IEP Predict GO terms from Neighborhoods
BP GO:0110037 regulation of nematode male tail tip morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0110039 positive regulation of nematode male tail tip morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0140042 lipid droplet formation IEP Predict GO terms from Neighborhoods
MF GO:0140585 promoter-enhancer loop anchoring activity IEP Predict GO terms from Neighborhoods
MF GO:0140587 chromatin loop anchoring activity IEP Predict GO terms from Neighborhoods
BP GO:0140694 non-membrane-bounded organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902438 response to vanadate(3-) IEP Predict GO terms from Neighborhoods
BP GO:1902652 secondary alcohol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903715 regulation of aerobic respiration IEP Predict GO terms from Neighborhoods
BP GO:2000243 positive regulation of reproductive process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001660 SAM 298 358
IPR011084 DRMBL 654 755
IPR036866 RibonucZ/Hydroxyglut_hydro 447 752
IPR013761 SAM/pointed_sf 296 360
No external refs found!