SOLTUB.AGRIA.G00000029036


Description : DNA-directed RNA polymerase III subunit RPC5


Gene families : OG_02_0016236 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000029036
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_269


Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP Predict GO terms from Neighborhoods
BP GO:0000338 protein deneddylation IEP Predict GO terms from Neighborhoods
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0000909 sporocarp development involved in sexual reproduction IEP Predict GO terms from Neighborhoods
BP GO:0001751 compound eye photoreceptor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0001754 eye photoreceptor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0003002 regionalization IEP Predict GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
MF GO:0004175 endopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004222 metalloendopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004298 threonine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004843 cysteine-type deubiquitinase activity IEP Predict GO terms from Neighborhoods
CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005666 RNA polymerase III complex IEP Predict GO terms from Neighborhoods
CC GO:0005689 U12-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005815 microtubule organizing center IEP Predict GO terms from Neighborhoods
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predict GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006261 DNA-templated DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006383 transcription by RNA polymerase III IEP Predict GO terms from Neighborhoods
BP GO:0006810 transport IEP Predict GO terms from Neighborhoods
BP GO:0006887 exocytosis IEP Predict GO terms from Neighborhoods
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Predict GO terms from Neighborhoods
BP GO:0007088 regulation of mitotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0007093 mitotic cell cycle checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0007094 mitotic spindle assembly checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0007282 cystoblast division IEP Predict GO terms from Neighborhoods
BP GO:0007309 oocyte axis specification IEP Predict GO terms from Neighborhoods
BP GO:0007310 oocyte dorsal/ventral axis specification IEP Predict GO terms from Neighborhoods
BP GO:0007314 oocyte anterior/posterior axis specification IEP Predict GO terms from Neighborhoods
BP GO:0007346 regulation of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0007409 axonogenesis IEP Predict GO terms from Neighborhoods
BP GO:0007602 phototransduction IEP Predict GO terms from Neighborhoods
CC GO:0008021 synaptic vesicle IEP Predict GO terms from Neighborhoods
MF GO:0008022 protein C-terminus binding IEP Predict GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Predict GO terms from Neighborhoods
CC GO:0008180 COP9 signalosome IEP Predict GO terms from Neighborhoods
MF GO:0008187 poly-pyrimidine tract binding IEP Predict GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008266 poly(U) RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0008347 glial cell migration IEP Predict GO terms from Neighborhoods
BP GO:0008356 asymmetric cell division IEP Predict GO terms from Neighborhoods
BP GO:0008406 gonad development IEP Predict GO terms from Neighborhoods
BP GO:0009583 detection of light stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009585 red, far-red light phototransduction IEP Predict GO terms from Neighborhoods
BP GO:0009798 axis specification IEP Predict GO terms from Neighborhoods
BP GO:0009948 anterior/posterior axis specification IEP Predict GO terms from Neighborhoods
BP GO:0009950 dorsal/ventral axis specification IEP Predict GO terms from Neighborhoods
BP GO:0009956 radial pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010093 specification of floral organ identity IEP Predict GO terms from Neighborhoods
BP GO:0010099 regulation of photomorphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010100 negative regulation of photomorphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010387 COP9 signalosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0010496 intercellular transport IEP Predict GO terms from Neighborhoods
BP GO:0010564 regulation of cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Predict GO terms from Neighborhoods
BP GO:0010971 positive regulation of G2/M transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016073 snRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016180 snRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0016192 vesicle-mediated transport IEP Predict GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Predict GO terms from Neighborhoods
MF GO:0017151 DEAD/H-box RNA helicase binding IEP Predict GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0019784 deNEDDylase activity IEP Predict GO terms from Neighborhoods
BP GO:0019954 asexual reproduction IEP Predict GO terms from Neighborhoods
MF GO:0019955 cytokine binding IEP Predict GO terms from Neighborhoods
BP GO:0022008 neurogenesis IEP Predict GO terms from Neighborhoods
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Predict GO terms from Neighborhoods
BP GO:0030182 neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0030447 filamentous growth IEP Predict GO terms from Neighborhoods
BP GO:0030448 hyphal growth IEP Predict GO terms from Neighborhoods
BP GO:0030582 reproductive fruiting body development IEP Predict GO terms from Neighborhoods
BP GO:0030584 sporocarp development IEP Predict GO terms from Neighborhoods
BP GO:0030656 regulation of vitamin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0030718 germ-line stem cell population maintenance IEP Predict GO terms from Neighborhoods
CC GO:0030880 RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0031123 RNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031577 spindle checkpoint signaling IEP Predict GO terms from Neighborhoods
CC GO:0031672 A band IEP Predict GO terms from Neighborhoods
BP GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032527 protein exit from endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0032872 regulation of stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0032990 cell part morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0033045 regulation of sister chromatid segregation IEP Predict GO terms from Neighborhoods
BP GO:0033046 negative regulation of sister chromatid segregation IEP Predict GO terms from Neighborhoods
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Predict GO terms from Neighborhoods
BP GO:0033048 negative regulation of mitotic sister chromatid segregation IEP Predict GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
CC GO:0034399 nuclear periphery IEP Predict GO terms from Neighborhoods
BP GO:0034472 snRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035203 regulation of lamellocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0035204 negative regulation of lamellocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0035206 regulation of hemocyte proliferation IEP Predict GO terms from Neighborhoods
BP GO:0035207 negative regulation of hemocyte proliferation IEP Predict GO terms from Neighborhoods
MF GO:0035718 macrophage migration inhibitory factor binding IEP Predict GO terms from Neighborhoods
BP GO:0036099 female germ-line stem cell population maintenance IEP Predict GO terms from Neighborhoods
BP GO:0042023 DNA endoreduplication IEP Predict GO terms from Neighborhoods
BP GO:0042063 gliogenesis IEP Predict GO terms from Neighborhoods
BP GO:0042177 negative regulation of protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043687 post-translational protein modification IEP Predict GO terms from Neighborhoods
BP GO:0044786 cell cycle DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0045116 protein neddylation IEP Predict GO terms from Neighborhoods
CC GO:0045171 intercellular bridge IEP Predict GO terms from Neighborhoods
BP GO:0045610 regulation of hemocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045611 negative regulation of hemocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045613 regulation of plasmatocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045614 negative regulation of plasmatocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045839 negative regulation of mitotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0045841 negative regulation of mitotic metaphase/anaphase transition IEP Predict GO terms from Neighborhoods
BP GO:0046328 regulation of JNK cascade IEP Predict GO terms from Neighborhoods
BP GO:0046530 photoreceptor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0048138 germ-line cyst encapsulation IEP Predict GO terms from Neighborhoods
BP GO:0048140 male germ-line cyst encapsulation IEP Predict GO terms from Neighborhoods
BP GO:0048142 germarium-derived cystoblast division IEP Predict GO terms from Neighborhoods
BP GO:0048666 neuron development IEP Predict GO terms from Neighborhoods
BP GO:0048766 root hair initiation IEP Predict GO terms from Neighborhoods
BP GO:0048812 neuron projection morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048858 cell projection morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0051028 mRNA transport IEP Predict GO terms from Neighborhoods
BP GO:0051091 positive regulation of DNA-binding transcription factor activity IEP Predict GO terms from Neighborhoods
BP GO:0051234 establishment of localization IEP Predict GO terms from Neighborhoods
BP GO:0051648 vesicle localization IEP Predict GO terms from Neighborhoods
BP GO:0051650 establishment of vesicle localization IEP Predict GO terms from Neighborhoods
BP GO:0051726 regulation of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051784 negative regulation of nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0051983 regulation of chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0051985 negative regulation of chromosome segregation IEP Predict GO terms from Neighborhoods
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0060118 vestibular receptor cell development IEP Predict GO terms from Neighborhoods
BP GO:0060119 inner ear receptor cell development IEP Predict GO terms from Neighborhoods
MF GO:0070003 threonine-type peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0070122 obsolete isopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0070302 regulation of stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
CC GO:0070382 exocytic vesicle IEP Predict GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Predict GO terms from Neighborhoods
BP GO:0070791 cleistothecium development IEP Predict GO terms from Neighborhoods
BP GO:0071173 spindle assembly checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0071174 mitotic spindle checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0075259 spore-bearing structure development IEP Predict GO terms from Neighborhoods
BP GO:0090057 root radial pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090701 specification of plant organ identity IEP Predict GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Predict GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Predict GO terms from Neighborhoods
BP GO:0120039 plasma membrane bounded cell projection morphogenesis IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:1900101 regulation of endoplasmic reticulum unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:1901799 negative regulation of proteasomal protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901987 regulation of cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1901992 positive regulation of mitotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902751 positive regulation of cell cycle G2/M phase transition IEP Predict GO terms from Neighborhoods
BP GO:1903051 negative regulation of proteolysis involved in protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903706 regulation of hemopoiesis IEP Predict GO terms from Neighborhoods
BP GO:1903894 regulation of IRE1-mediated unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:1905818 regulation of chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1905819 negative regulation of chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1905897 regulation of response to endoplasmic reticulum stress IEP Predict GO terms from Neighborhoods
BP GO:1990182 exosomal secretion IEP Predict GO terms from Neighborhoods
CC GO:1990423 RZZ complex IEP Predict GO terms from Neighborhoods
BP GO:1990641 response to iron ion starvation IEP Predict GO terms from Neighborhoods
BP GO:2000059 negative regulation of ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000082 regulation of L-ascorbic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000816 negative regulation of mitotic sister chromatid separation IEP Predict GO terms from Neighborhoods
BP GO:2001251 negative regulation of chromosome organization IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR006886 RNA_pol_III_Rpc5 90 471
No external refs found!