SOLTUB.AGRIA.G00000029133

Description : Deoxyribodipyrimidine photo-lyase

Gene families : OG_02_0016269 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000029133
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_214

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000719	photoreactive repair	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003904	deoxyribodipyrimidine photo-lyase activity	IEA	AHRD
MF	GO:0003913	DNA photolyase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006290	pyrimidine dimer repair	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009650	UV protection	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0071949	FAD binding	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000329	fungal-type vacuole membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0001653	peptide receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002238	response to molecule of fungal origin	IEP	Predict GO terms from Neighborhoods
BP	GO:0002831	regulation of response to biotic stimulus	IEP	Predict GO terms from Neighborhoods
MF	GO:0003684	damaged DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004222	metalloendopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004672	protein kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004675	transmembrane receptor protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005745	m-AAA complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005757	mitochondrial permeability transition pore complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006816	calcium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006851	mitochondrial calcium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006874	cellular calcium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006884	cell volume homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007005	mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007006	mitochondrial membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007007	inner mitochondrial membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0007272	ensheathment of neurons	IEP	Predict GO terms from Neighborhoods
BP	GO:0007409	axonogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0008053	mitochondrial fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0008088	axo-dendritic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0008089	anterograde axonal transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0008219	cell death	IEP	Predict GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008361	regulation of cell size	IEP	Predict GO terms from Neighborhoods
BP	GO:0008366	axon ensheathment	IEP	Predict GO terms from Neighborhoods
BP	GO:0009311	oligosaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009553	embryo sac development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009653	anatomical structure morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009804	coumarin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009805	coumarin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009838	abscission	IEP	Predict GO terms from Neighborhoods
MF	GO:0009881	photoreceptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009991	response to extracellular stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009992	cellular water homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010039	response to iron ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010078	maintenance of root meristem identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010082	regulation of root meristem growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0010103	stomatal complex morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010224	response to UV-B	IEP	Predict GO terms from Neighborhoods
BP	GO:0010421	hydrogen peroxide-mediated programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0010970	transport along microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0012501	programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0016485	protein processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0016540	protein autoprocessing	IEP	Predict GO terms from Neighborhoods
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0018298	obsolete protein-chromophore linkage	IEP	Predict GO terms from Neighborhoods
BP	GO:0019725	cellular homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030104	water homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030705	cytoskeleton-dependent intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0031667	response to nutrient levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0032989	cellular component morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0032990	cell part morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0033619	membrane protein proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0034982	mitochondrial protein processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0035794	positive regulation of mitochondrial membrane permeability	IEP	Predict GO terms from Neighborhoods
BP	GO:0036444	calcium import into the mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0036473	cell death in response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0036474	cell death in response to hydrogen peroxide	IEP	Predict GO terms from Neighborhoods
MF	GO:0038023	signaling receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042407	cristae formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042552	myelination	IEP	Predict GO terms from Neighborhoods
BP	GO:0042594	response to starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046902	regulation of mitochondrial membrane permeability	IEP	Predict GO terms from Neighborhoods
CC	GO:0046930	pore complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0048284	organelle fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0048481	plant ovule development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048812	neuron projection morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048858	cell projection morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050829	defense response to Gram-negative bacterium	IEP	Predict GO terms from Neighborhoods
MF	GO:0051082	unfolded protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051213	dioxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051560	mitochondrial calcium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0051604	protein maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0055074	calcium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055082	cellular chemical homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060004	reflex	IEP	Predict GO terms from Neighborhoods
BP	GO:0060013	righting reflex	IEP	Predict GO terms from Neighborhoods
MF	GO:0060089	molecular transducer activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070588	calcium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072503	cellular divalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0072507	divalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090559	regulation of membrane permeability	IEP	Predict GO terms from Neighborhoods
BP	GO:0090626	plant epidermis morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090696	post-embryonic plant organ development	IEP	Predict GO terms from Neighborhoods
CC	GO:0097002	mitochondrial inner boundary membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0097468	programmed cell death in response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
CC	GO:0098798	mitochondrial protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098852	lytic vacuole membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098930	axonal transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0099111	microtubule-based transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0106145	scopoletin 8-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0106147	fraxetin biosynthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0110037	regulation of nematode male tail tip morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0110039	positive regulation of nematode male tail tip morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0120039	plasma membrane bounded cell projection morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predict GO terms from Neighborhoods
BP	GO:1901002	positive regulation of response to salt stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1902288	regulation of defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
BP	GO:1902290	positive regulation of defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
BP	GO:1902584	positive regulation of response to water deprivation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902686	mitochondrial outer membrane permeabilization involved in programmed cell death	IEP	Predict GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1905710	positive regulation of membrane permeability	IEP	Predict GO terms from Neighborhoods
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1990641	response to iron ion starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000038	regulation of stomatal complex development	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036134	Crypto/Photolyase_FAD-like_sf	215	478
IPR006050	DNA_photolyase_N	27	189
IPR036155	Crypto/Photolyase_N_sf	26	210
IPR008148	DNA_photolyase_2	8	460

External Links

No external refs found!

SOLTUB.AGRIA.G00000029133

Expression Profile

Co-expression Networks

Functional Annotation