SOLTUB.AGRIA.G00000029266


Description : Lysine-specific demethylase 5A


Gene families : OG_02_0023103 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000029266
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_173


Type GO Term Name Evidence Source
BP GO:0000122 negative regulation of transcription by RNA polymerase II IEA AHRD
MF GO:0000976 transcription cis-regulatory region binding IEA AHRD
CC GO:0001650 fibrillar center IEA AHRD
BP GO:0002457 T cell antigen processing and presentation IEA AHRD
MF GO:0003713 transcription coactivator activity IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0007338 single fertilization IEA AHRD
BP GO:0007526 larval somatic muscle development IEA AHRD
MF GO:0008198 ferrous iron binding IEA AHRD
MF GO:0008270 zinc ion binding IEA AHRD
BP GO:0008340 determination of adult lifespan IEA AHRD
BP GO:0009910 negative regulation of flower development IEA AHRD
BP GO:0010216 maintenance of DNA methylation IEA AHRD
BP GO:0010628 positive regulation of gene expression IEA AHRD
BP GO:0030717 oocyte karyosome formation IEA AHRD
MF GO:0031490 chromatin DNA binding IEA AHRD
BP GO:0032922 circadian regulation of gene expression IEA AHRD
CC GO:0032993 protein-DNA complex IEA AHRD
BP GO:0033601 positive regulation of mammary gland epithelial cell proliferation IEA AHRD
MF GO:0033749 histone H3-methyl-arginine-3 demethylase activity IEA AHRD
MF GO:0034647 histone H3-tri/di/monomethyl-lysine-4 demethylase activity IEA AHRD
MF GO:0034648 obsolete histone demethylase activity (H3-dimethyl-K4 specific) IEA AHRD
BP GO:0034721 histone H3-K4 demethylation, trimethyl-H3-K4-specific IEA AHRD
BP GO:0036098 male germ-line stem cell population maintenance IEA AHRD
BP GO:0040010 positive regulation of growth rate IEA AHRD
BP GO:0040028 regulation of vulval development IEA AHRD
MF GO:0042054 histone methyltransferase activity IEA AHRD
BP GO:0043970 histone H3-K9 acetylation IEA AHRD
BP GO:0045475 locomotor rhythm IEA AHRD
BP GO:0045814 negative regulation of gene expression, epigenetic IEA AHRD
BP GO:0045893 positive regulation of DNA-templated transcription IEA AHRD
BP GO:0048579 negative regulation of long-day photoperiodism, flowering IEA AHRD
MF GO:0050681 nuclear androgen receptor binding IEA AHRD
BP GO:0060444 branching involved in mammary gland duct morphogenesis IEA AHRD
BP GO:0060763 mammary duct terminal end bud growth IEA AHRD
BP GO:0060765 regulation of androgen receptor signaling pathway IEA AHRD
BP GO:0061038 uterus morphogenesis IEA AHRD
BP GO:0070193 synaptonemal complex organization IEA AHRD
CC GO:0070822 Sin3-type complex IEA AHRD
BP GO:1901726 negative regulation of histone deacetylase activity IEA AHRD
BP GO:1990830 cellular response to leukemia inhibitory factor IEA AHRD
BP GO:2000737 negative regulation of stem cell differentiation IEA AHRD
BP GO:2000864 regulation of estradiol secretion IEA AHRD
Type GO Term Name Evidence Source
BP GO:0001525 angiogenesis IEP Predict GO terms from Neighborhoods
MF GO:0004721 phosphoprotein phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0004725 protein tyrosine phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0006470 protein dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0007420 brain development IEP Predict GO terms from Neighborhoods
BP GO:0035335 peptidyl-tyrosine dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0045165 cell fate commitment IEP Predict GO terms from Neighborhoods
BP GO:0048663 neuron fate commitment IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR036431 ARID_dom_sf 81 195
IPR003349 JmjN 32 65
IPR011011 Znf_FYVE_PHD 240 294
IPR003347 JmjC_dom 417 533
IPR013637 Lys_sp_deMease-like_dom 892 1184
IPR013637 Lys_sp_deMease-like_dom 1146 1416
IPR019787 Znf_PHD-finger 246 293
IPR011011 Znf_FYVE_PHD 1697 1745
IPR011011 Znf_FYVE_PHD 1431 1494
IPR004198 Znf_C5HC2 626 678
IPR001606 ARID_dom 107 188
No external refs found!