SOLTUB.AGRIA.G00000029266

Description : Lysine-specific demethylase 5A

Gene families : OG_02_0023103 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000029266
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_173

Type	GO Term	Name	Evidence	Source
CC	GO:0000118	histone deacetylase complex	None	Extended
BP	GO:0000122	negative regulation of transcription by RNA polymerase II	IEA	AHRD
MF	GO:0000976	transcription cis-regulatory region binding	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
CC	GO:0001650	fibrillar center	IEA	AHRD
BP	GO:0001763	morphogenesis of a branching structure	None	Extended
BP	GO:0002009	morphogenesis of an epithelium	None	Extended
BP	GO:0002376	immune system process	None	Extended
BP	GO:0002457	T cell antigen processing and presentation	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003712	transcription coregulator activity	None	Extended
MF	GO:0003713	transcription coactivator activity	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005506	iron ion binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006473	protein acetylation	None	Extended
BP	GO:0006475	internal protein amino acid acetylation	None	Extended
BP	GO:0006482	protein demethylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007338	single fertilization	IEA	AHRD
BP	GO:0007525	somatic muscle development	None	Extended
BP	GO:0007526	larval somatic muscle development	IEA	AHRD
BP	GO:0007610	behavior	None	Extended
BP	GO:0007622	rhythmic behavior	None	Extended
BP	GO:0007623	circadian rhythm	None	Extended
BP	GO:0007626	locomotory behavior	None	Extended
MF	GO:0008134	transcription factor binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008198	ferrous iron binding	IEA	AHRD
BP	GO:0008214	protein dealkylation	None	Extended
MF	GO:0008270	zinc ion binding	IEA	AHRD
MF	GO:0008276	protein methyltransferase activity	None	Extended
BP	GO:0008284	positive regulation of cell population proliferation	None	Extended
BP	GO:0008340	determination of adult lifespan	IEA	AHRD
BP	GO:0009566	fertilization	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009887	animal organ morphogenesis	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009909	regulation of flower development	None	Extended
BP	GO:0009910	negative regulation of flower development	IEA	AHRD
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010216	maintenance of DNA methylation	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	IEA	AHRD
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016573	histone acetylation	None	Extended
BP	GO:0016577	histone demethylation	None	Extended
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	None	Extended
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
MF	GO:0016922	nuclear receptor binding	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0018393	internal peptidyl-lysine acetylation	None	Extended
BP	GO:0018394	peptidyl-lysine acetylation	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019827	stem cell population maintenance	None	Extended
BP	GO:0019882	antigen processing and presentation	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0030717	oocyte karyosome formation	IEA	AHRD
BP	GO:0030718	germ-line stem cell population maintenance	None	Extended
BP	GO:0031056	regulation of histone modification	None	Extended
BP	GO:0031057	negative regulation of histone modification	None	Extended
BP	GO:0031063	regulation of histone deacetylation	None	Extended
BP	GO:0031064	negative regulation of histone deacetylation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031400	negative regulation of protein modification process	None	Extended
MF	GO:0031490	chromatin DNA binding	IEA	AHRD
BP	GO:0032368	regulation of lipid transport	None	Extended
MF	GO:0032451	demethylase activity	None	Extended
MF	GO:0032452	histone demethylase activity	None	Extended
MF	GO:0032453	histone H3-methyl-lysine-4 demethylase activity	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032922	circadian regulation of gene expression	IEA	AHRD
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	IEA	AHRD
BP	GO:0033143	regulation of intracellular steroid hormone receptor signaling pathway	None	Extended
BP	GO:0033599	regulation of mammary gland epithelial cell proliferation	None	Extended
BP	GO:0033601	positive regulation of mammary gland epithelial cell proliferation	IEA	AHRD
MF	GO:0033749	histone H3-methyl-arginine-3 demethylase activity	IEA	AHRD
BP	GO:0034097	response to cytokine	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0034647	histone H3-tri/di/monomethyl-lysine-4 demethylase activity	IEA	AHRD
MF	GO:0034648	obsolete histone demethylase activity (H3-dimethyl-K4 specific)	IEA	AHRD
BP	GO:0034720	histone H3-K4 demethylation	None	Extended
BP	GO:0034721	histone H3-K4 demethylation, trimethyl-H3-K4-specific	IEA	AHRD
BP	GO:0035239	tube morphogenesis	None	Extended
BP	GO:0036098	male germ-line stem cell population maintenance	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0040009	regulation of growth rate	None	Extended
BP	GO:0040010	positive regulation of growth rate	IEA	AHRD
BP	GO:0040028	regulation of vulval development	IEA	AHRD
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
MF	GO:0042054	histone methyltransferase activity	IEA	AHRD
BP	GO:0042127	regulation of cell population proliferation	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043086	negative regulation of catalytic activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043543	protein acylation	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0043966	histone H3 acetylation	None	Extended
BP	GO:0043970	histone H3-K9 acetylation	IEA	AHRD
BP	GO:0044057	regulation of system process	None	Extended
BP	GO:0044060	regulation of endocrine process	None	Extended
BP	GO:0044092	negative regulation of molecular function	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045475	locomotor rhythm	IEA	AHRD
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0045596	negative regulation of cell differentiation	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEA	AHRD
BP	GO:0045892	negative regulation of DNA-templated transcription	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0045927	positive regulation of growth	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046883	regulation of hormone secretion	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048512	circadian behavior	None	Extended
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048569	post-embryonic animal organ development	None	Extended
BP	GO:0048579	negative regulation of long-day photoperiodism, flowering	IEA	AHRD
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048581	negative regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048586	regulation of long-day photoperiodism, flowering	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048729	tissue morphogenesis	None	Extended
BP	GO:0048754	branching morphogenesis of an epithelial tube	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050678	regulation of epithelial cell proliferation	None	Extended
BP	GO:0050679	positive regulation of epithelial cell proliferation	None	Extended
MF	GO:0050681	nuclear androgen receptor binding	IEA	AHRD
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051046	regulation of secretion	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
MF	GO:0051213	dioxygenase activity	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051336	regulation of hydrolase activity	None	Extended
BP	GO:0051346	negative regulation of hydrolase activity	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060444	branching involved in mammary gland duct morphogenesis	IEA	AHRD
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0060763	mammary duct terminal end bud growth	IEA	AHRD
BP	GO:0060765	regulation of androgen receptor signaling pathway	IEA	AHRD
BP	GO:0061038	uterus morphogenesis	IEA	AHRD
BP	GO:0061061	muscle structure development	None	Extended
BP	GO:0061138	morphogenesis of a branching epithelium	None	Extended
MF	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	None	Extended
BP	GO:0061647	histone H3-K9 modification	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0061988	karyosome formation	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0070076	histone lysine demethylation	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0070193	synaptonemal complex organization	IEA	AHRD
CC	GO:0070822	Sin3-type complex	IEA	AHRD
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0070988	demethylation	None	Extended
BP	GO:0071310	cellular response to organic substance	None	Extended
BP	GO:0071345	cellular response to cytokine stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090311	regulation of protein deacetylation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098727	maintenance of cell number	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:0140297	DNA-binding transcription factor binding	None	Extended
MF	GO:0140457	protein demethylase activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:0150065	regulation of deacetylase activity	None	Extended
BP	GO:0150066	negative regulation of deacetylase activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901725	regulation of histone deacetylase activity	None	Extended
BP	GO:1901726	negative regulation of histone deacetylase activity	IEA	AHRD
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903530	regulation of secretion by cell	None	Extended
BP	GO:1905952	regulation of lipid localization	None	Extended
BP	GO:1990823	response to leukemia inhibitory factor	None	Extended
BP	GO:1990830	cellular response to leukemia inhibitory factor	IEA	AHRD
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000028	regulation of photoperiodism, flowering	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000242	negative regulation of reproductive process	None	Extended
BP	GO:2000736	regulation of stem cell differentiation	None	Extended
BP	GO:2000737	negative regulation of stem cell differentiation	IEA	AHRD
BP	GO:2000831	regulation of steroid hormone secretion	None	Extended
BP	GO:2000864	regulation of estradiol secretion	IEA	AHRD
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001525	angiogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004725	protein tyrosine phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006470	protein dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007420	brain development	IEP	Predict GO terms from Neighborhoods
BP	GO:0035335	peptidyl-tyrosine dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045165	cell fate commitment	IEP	Predict GO terms from Neighborhoods
BP	GO:0048663	neuron fate commitment	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036431	ARID_dom_sf	81	195
IPR003349	JmjN	32	65
IPR011011	Znf_FYVE_PHD	240	294
IPR003347	JmjC_dom	417	533
IPR013637	Lys_sp_deMease-like_dom	892	1184
IPR013637	Lys_sp_deMease-like_dom	1146	1416
IPR019787	Znf_PHD-finger	246	293
IPR011011	Znf_FYVE_PHD	1697	1745
IPR011011	Znf_FYVE_PHD	1431	1494
IPR004198	Znf_C5HC2	626	678
IPR001606	ARID_dom	107	188

External Links

No external refs found!

SOLTUB.AGRIA.G00000029266

Expression Profile

Co-expression Networks

Functional Annotation