SOLTUB.AGRIA.G00000029409

Description : Nucleoside diphosphate kinase

Gene families : OG_02_0010243 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000029409
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_130

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004550	nucleoside diphosphate kinase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005743	mitochondrial inner membrane	IEA	AHRD
CC	GO:0005758	mitochondrial intermembrane space	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006164	purine nucleotide biosynthetic process	None	Extended
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEA	AHRD
BP	GO:0006183	GTP biosynthetic process	IEA	AHRD
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006228	UTP biosynthetic process	IEA	AHRD
BP	GO:0006241	CTP biosynthetic process	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	AHRD
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009132	nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009141	nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009142	nucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009144	purine nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009147	pyrimidine nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009148	pyrimidine nucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009152	purine ribonucleotide biosynthetic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009199	ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009208	pyrimidine ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009209	pyrimidine ribonucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
CC	GO:0009543	chloroplast thylakoid lumen	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0016301	kinase activity	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
MF	GO:0019205	nucleobase-containing compound kinase activity	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
CC	GO:0019866	organelle inner membrane	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031966	mitochondrial membrane	None	Extended
CC	GO:0031970	organelle envelope lumen	None	Extended
CC	GO:0031974	membrane-enclosed lumen	None	Extended
CC	GO:0031977	thylakoid lumen	None	Extended
CC	GO:0031978	plastid thylakoid lumen	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043233	organelle lumen	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046036	CTP metabolic process	None	Extended
BP	GO:0046039	GTP metabolic process	None	Extended
BP	GO:0046051	UTP metabolic process	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0046939	nucleotide phosphorylation	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
CC	GO:0070013	intracellular organelle lumen	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0071944	cell periphery	IEA	AHRD
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0072522	purine-containing compound biosynthetic process	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000118	histone deacetylase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0001822	kidney development	IEP	Predict GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004521	endoribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004540	ribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005080	protein kinase C binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005504	fatty acid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005741	mitochondrial outer membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005759	mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
CC	GO:0005777	peroxisome	IEP	Predict GO terms from Neighborhoods
BP	GO:0006195	purine nucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006457	protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006544	glycine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006563	L-serine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006564	L-serine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006566	threonine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006567	threonine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006633	fatty acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007420	brain development	IEP	Predict GO terms from Neighborhoods
BP	GO:0008285	negative regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008320	protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009063	cellular amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009068	aspartate family amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009069	serine family amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009154	purine ribonucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009166	nucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009261	ribonucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009527	plastid outer membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009707	chloroplast outer membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0016053	organic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predict GO terms from Neighborhoods
MF	GO:0016819	hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
BP	GO:0016926	protein desumoylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0017148	negative regulation of translation	IEP	Predict GO terms from Neighborhoods
MF	GO:0019239	deaminase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019518	L-threonine catabolic process to glycine	IEP	Predict GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0019867	outer membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030324	lung development	IEP	Predict GO terms from Neighborhoods
MF	GO:0031406	carboxylic acid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031968	organelle outer membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0033293	monocarboxylic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034249	negative regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0036041	long-chain fatty acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0036424	L-phosphoserine phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0036425	obsolete D-phosphoserine phosphatase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0042579	microbody	IEP	Predict GO terms from Neighborhoods
BP	GO:0043487	regulation of RNA stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0043488	regulation of mRNA stability	IEP	Predict GO terms from Neighborhoods
MF	GO:0043530	adenosine 5'-monophosphoramidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044283	small molecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045036	protein targeting to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0046360	2-oxobutyrate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046361	2-oxobutyrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046434	organophosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046459	short-chain fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0047627	adenylylsulfatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050678	regulation of epithelial cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050680	negative regulation of epithelial cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050779	RNA destabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0050848	regulation of calcium-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0050850	positive regulation of calcium-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051248	negative regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051790	short-chain fatty acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061013	regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061014	positive regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061157	mRNA destabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0070314	G1 to G0 transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0070646	protein modification by small protein removal	IEP	Predict GO terms from Neighborhoods
BP	GO:0072331	signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:0072332	intrinsic apoptotic signaling pathway by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:0072523	purine-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0072598	protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0097190	apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0097193	intrinsic apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0120241	2-iminobutanoate/2-iminopropanoate deaminase	IEP	Predict GO terms from Neighborhoods
MF	GO:0120242	2-iminobutanoate deaminase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140318	protein transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901983	regulation of protein acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901984	negative regulation of protein acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902074	response to salt	IEP	Predict GO terms from Neighborhoods
BP	GO:1903313	positive regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000756	regulation of peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000757	negative regulation of peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036850	NDK-like_dom_sf	88	235
IPR034907	NDK-like_dom	89	222

External Links

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SOLTUB.AGRIA.G00000029409

Expression Profile

Co-expression Networks

Functional Annotation