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  5. SOLTUB.AGRIA.G00000029788

SOLTUB.AGRIA.G00000029788


Description : Vacuolar protein sorting 55 (VPS55) family protein


Gene families : OG_02_0010317 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000029788
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_217


Type GO Term Name Evidence Source
CC GO:0005768 endosome IEA AHRD
CC GO:0005773 vacuole IEA AHRD
CC GO:0016020 membrane IEA AHRD
BP GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEP Predict GO terms from Neighborhoods
CC GO:0000118 histone deacetylase complex IEP Predict GO terms from Neighborhoods
CC GO:0000123 histone acetyltransferase complex IEP Predict GO terms from Neighborhoods
CC GO:0000124 SAGA complex IEP Predict GO terms from Neighborhoods
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predict GO terms from Neighborhoods
BP GO:0000303 response to superoxide IEP Predict GO terms from Neighborhoods
BP GO:0000305 response to oxygen radical IEP Predict GO terms from Neighborhoods
CC GO:0000322 storage vacuole IEP Predict GO terms from Neighborhoods
CC GO:0000324 fungal-type vacuole IEP Predict GO terms from Neighborhoods
CC GO:0000329 fungal-type vacuole membrane IEP Predict GO terms from Neighborhoods
CC GO:0000421 autophagosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0000812 Swr1 complex IEP Predict GO terms from Neighborhoods
BP GO:0001539 cilium or flagellum-dependent cell motility IEP Predict GO terms from Neighborhoods
BP GO:0001667 ameboidal-type cell migration IEP Predict GO terms from Neighborhoods
BP GO:0001703 gastrulation with mouth forming first IEP Predict GO terms from Neighborhoods
BP GO:0003341 cilium movement IEP Predict GO terms from Neighborhoods
MF GO:0004362 glutathione-disulfide reductase (NADPH) activity IEP Predict GO terms from Neighborhoods
MF GO:0004364 glutathione transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004576 oligosaccharyl transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004581 dolichyl-phosphate beta-glucosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0005543 phospholipid binding IEP Predict GO terms from Neighborhoods
CC GO:0005758 mitochondrial intermembrane space IEP Predict GO terms from Neighborhoods
CC GO:0005759 mitochondrial matrix IEP Predict GO terms from Neighborhoods
CC GO:0005793 endoplasmic reticulum-Golgi intermediate compartment IEP Predict GO terms from Neighborhoods
CC GO:0005798 Golgi-associated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0005801 cis-Golgi network IEP Predict GO terms from Neighborhoods
BP GO:0006351 DNA-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:0006487 protein N-linked glycosylation IEP Predict GO terms from Neighborhoods
BP GO:0006493 protein O-linked glycosylation IEP Predict GO terms from Neighborhoods
BP GO:0006606 protein import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006621 protein retention in ER lumen IEP Predict GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0006995 cellular response to nitrogen starvation IEP Predict GO terms from Neighborhoods
BP GO:0007009 plasma membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0007029 endoplasmic reticulum organization IEP Predict GO terms from Neighborhoods
BP GO:0007043 cell-cell junction assembly IEP Predict GO terms from Neighborhoods
BP GO:0007127 meiosis I IEP Predict GO terms from Neighborhoods
BP GO:0007140 male meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0007141 male meiosis I IEP Predict GO terms from Neighborhoods
BP GO:0007286 spermatid development IEP Predict GO terms from Neighborhoods
BP GO:0007368 determination of left/right symmetry IEP Predict GO terms from Neighborhoods
BP GO:0007369 gastrulation IEP Predict GO terms from Neighborhoods
BP GO:0007509 mesoderm migration involved in gastrulation IEP Predict GO terms from Neighborhoods
BP GO:0008078 mesodermal cell migration IEP Predict GO terms from Neighborhoods
BP GO:0008104 protein localization IEP Predict GO terms from Neighborhoods
MF GO:0008289 lipid binding IEP Predict GO terms from Neighborhoods
BP GO:0008356 asymmetric cell division IEP Predict GO terms from Neighborhoods
MF GO:0008429 phosphatidylethanolamine binding IEP Predict GO terms from Neighborhoods
BP GO:0008535 respiratory chain complex IV assembly IEP Predict GO terms from Neighborhoods
BP GO:0009267 cellular response to starvation IEP Predict GO terms from Neighborhoods
BP GO:0009799 specification of symmetry IEP Predict GO terms from Neighborhoods
BP GO:0009855 determination of bilateral symmetry IEP Predict GO terms from Neighborhoods
BP GO:0009953 dorsal/ventral pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010004 gastrulation involving germ band extension IEP Predict GO terms from Neighborhoods
BP GO:0010390 histone monoubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0015031 protein transport IEP Predict GO terms from Neighborhoods
MF GO:0015035 protein-disulfide reductase activity IEP Predict GO terms from Neighborhoods
MF GO:0015036 disulfide oxidoreductase activity IEP Predict GO terms from Neighborhoods
MF GO:0015038 glutathione disulfide oxidoreductase activity IEP Predict GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0016226 iron-sulfur cluster assembly IEP Predict GO terms from Neighborhoods
BP GO:0016570 histone modification IEP Predict GO terms from Neighborhoods
BP GO:0016574 histone ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0016578 histone deubiquitination IEP Predict GO terms from Neighborhoods
CC GO:0016580 Sin3 complex IEP Predict GO terms from Neighborhoods
CC GO:0016602 CCAAT-binding factor complex IEP Predict GO terms from Neighborhoods
MF GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor IEP Predict GO terms from Neighborhoods
BP GO:0017004 cytochrome complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0017015 regulation of transforming growth factor beta receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0017145 stem cell division IEP Predict GO terms from Neighborhoods
BP GO:0018196 peptidyl-asparagine modification IEP Predict GO terms from Neighborhoods
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Predict GO terms from Neighborhoods
BP GO:0019991 septate junction assembly IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
CC GO:0030134 COPII-coated ER to Golgi transport vesicle IEP Predict GO terms from Neighborhoods
CC GO:0030137 COPI-coated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0030173 integral component of Golgi membrane IEP Predict GO terms from Neighborhoods
BP GO:0030317 flagellated sperm motility IEP Predict GO terms from Neighborhoods
MF GO:0030374 nuclear receptor coactivator activity IEP Predict GO terms from Neighborhoods
BP GO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0031063 regulation of histone deacetylation IEP Predict GO terms from Neighborhoods
BP GO:0031065 positive regulation of histone deacetylation IEP Predict GO terms from Neighborhoods
BP GO:0031152 aggregation involved in sorocarp development IEP Predict GO terms from Neighborhoods
BP GO:0031154 culmination involved in sorocarp development IEP Predict GO terms from Neighborhoods
BP GO:0031163 metallo-sulfur cluster assembly IEP Predict GO terms from Neighborhoods
CC GO:0031228 intrinsic component of Golgi membrane IEP Predict GO terms from Neighborhoods
CC GO:0031248 protein acetyltransferase complex IEP Predict GO terms from Neighborhoods
CC GO:0031970 organelle envelope lumen IEP Predict GO terms from Neighborhoods
CC GO:0031974 membrane-enclosed lumen IEP Predict GO terms from Neighborhoods
BP GO:0032006 regulation of TOR signaling IEP Predict GO terms from Neighborhoods
BP GO:0032007 negative regulation of TOR signaling IEP Predict GO terms from Neighborhoods
BP GO:0032507 maintenance of protein location in cell IEP Predict GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0032777 Piccolo NuA4 histone acetyltransferase complex IEP Predict GO terms from Neighborhoods
BP GO:0033036 macromolecule localization IEP Predict GO terms from Neighborhoods
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0033130 acetylcholine receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0033617 mitochondrial cytochrome c oxidase assembly IEP Predict GO terms from Neighborhoods
BP GO:0034329 cell junction assembly IEP Predict GO terms from Neighborhoods
MF GO:0035064 methylated histone binding IEP Predict GO terms from Neighborhoods
CC GO:0035145 exon-exon junction complex IEP Predict GO terms from Neighborhoods
CC GO:0035267 NuA4 histone acetyltransferase complex IEP Predict GO terms from Neighborhoods
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0035616 histone H2B conserved C-terminal lysine deubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0040003 chitin-based cuticle development IEP Predict GO terms from Neighborhoods
BP GO:0042074 cell migration involved in gastrulation IEP Predict GO terms from Neighborhoods
BP GO:0042078 germ-line stem cell division IEP Predict GO terms from Neighborhoods
BP GO:0042335 cuticle development IEP Predict GO terms from Neighborhoods
MF GO:0043022 ribosome binding IEP Predict GO terms from Neighborhoods
BP GO:0043113 receptor clustering IEP Predict GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0043189 H4/H2A histone acetyltransferase complex IEP Predict GO terms from Neighborhoods
CC GO:0043233 organelle lumen IEP Predict GO terms from Neighborhoods
MF GO:0043295 glutathione binding IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
BP GO:0043966 histone H3 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0043967 histone H4 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0043968 histone H2A acetylation IEP Predict GO terms from Neighborhoods
BP GO:0044572 [4Fe-4S] cluster assembly IEP Predict GO terms from Neighborhoods
BP GO:0045184 establishment of protein localization IEP Predict GO terms from Neighborhoods
BP GO:0045185 maintenance of protein location IEP Predict GO terms from Neighborhoods
BP GO:0045216 cell-cell junction organization IEP Predict GO terms from Neighborhoods
BP GO:0045454 cell redox homeostasis IEP Predict GO terms from Neighborhoods
MF GO:0047134 protein-disulfide reductase (NAD(P)) activity IEP Predict GO terms from Neighborhoods
BP GO:0048133 male germ-line stem cell asymmetric division IEP Predict GO terms from Neighborhoods
BP GO:0048167 regulation of synaptic plasticity IEP Predict GO terms from Neighborhoods
BP GO:0048870 cell motility IEP Predict GO terms from Neighborhoods
MF GO:0051536 iron-sulfur cluster binding IEP Predict GO terms from Neighborhoods
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predict GO terms from Neighborhoods
MF GO:0051540 metal cluster binding IEP Predict GO terms from Neighborhoods
BP GO:0051703 biological process involved in intraspecies interaction between organisms IEP Predict GO terms from Neighborhoods
BP GO:0060285 cilium-dependent cell motility IEP Predict GO terms from Neighborhoods
BP GO:0060294 cilium movement involved in cell motility IEP Predict GO terms from Neighborhoods
BP GO:0060548 negative regulation of cell death IEP Predict GO terms from Neighborhoods
CC GO:0070013 intracellular organelle lumen IEP Predict GO terms from Neighborhoods
CC GO:0070461 SAGA-type complex IEP Predict GO terms from Neighborhoods
BP GO:0070727 cellular macromolecule localization IEP Predict GO terms from Neighborhoods
CC GO:0070822 Sin3-type complex IEP Predict GO terms from Neighborhoods
BP GO:0071340 skeletal muscle acetylcholine-gated channel clustering IEP Predict GO terms from Neighborhoods
BP GO:0071450 cellular response to oxygen radical IEP Predict GO terms from Neighborhoods
BP GO:0071451 cellular response to superoxide IEP Predict GO terms from Neighborhoods
CC GO:0071819 DUBm complex IEP Predict GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0072520 seminiferous tubule development IEP Predict GO terms from Neighborhoods
BP GO:0072595 maintenance of protein localization in organelle IEP Predict GO terms from Neighborhoods
BP GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0090100 positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0090130 tissue migration IEP Predict GO terms from Neighborhoods
BP GO:0090287 regulation of cellular response to growth factor stimulus IEP Predict GO terms from Neighborhoods
BP GO:0090311 regulation of protein deacetylation IEP Predict GO terms from Neighborhoods
BP GO:0090312 positive regulation of protein deacetylation IEP Predict GO terms from Neighborhoods
CC GO:0097346 INO80-type complex IEP Predict GO terms from Neighborhoods
BP GO:0097428 protein maturation by iron-sulfur cluster transfer IEP Predict GO terms from Neighborhoods
MF GO:0097573 glutathione oxidoreductase activity IEP Predict GO terms from Neighborhoods
BP GO:0097659 nucleic acid-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:0097722 sperm motility IEP Predict GO terms from Neighborhoods
BP GO:0098722 asymmetric stem cell division IEP Predict GO terms from Neighborhoods
BP GO:0098728 germline stem cell asymmetric division IEP Predict GO terms from Neighborhoods
BP GO:0099120 socially cooperative development IEP Predict GO terms from Neighborhoods
BP GO:0106035 protein maturation by [4Fe-4S] cluster transfer IEP Predict GO terms from Neighborhoods
BP GO:0120192 tight junction assembly IEP Predict GO terms from Neighborhoods
BP GO:0120193 tight junction organization IEP Predict GO terms from Neighborhoods
MF GO:0140034 methylation-dependent protein binding IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
MF GO:1900750 oligopeptide binding IEP Predict GO terms from Neighborhoods
BP GO:1901796 regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1901797 negative regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902165 regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902166 negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902229 regulation of intrinsic apoptotic signaling pathway in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:1902230 negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:1902253 regulation of intrinsic apoptotic signaling pathway by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator IEP Predict GO terms from Neighborhoods
CC GO:1902493 acetyltransferase complex IEP Predict GO terms from Neighborhoods
BP GO:1902532 negative regulation of intracellular signal transduction IEP Predict GO terms from Neighborhoods
CC GO:1902562 H4 histone acetyltransferase complex IEP Predict GO terms from Neighborhoods
BP GO:1903076 regulation of protein localization to plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:1903078 positive regulation of protein localization to plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:1903259 exon-exon junction complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:1903432 regulation of TORC1 signaling IEP Predict GO terms from Neighborhoods
BP GO:1903509 liposaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903844 regulation of cellular response to transforming growth factor beta stimulus IEP Predict GO terms from Neighborhoods
BP GO:1903846 positive regulation of cellular response to transforming growth factor beta stimulus IEP Predict GO terms from Neighborhoods
BP GO:1904262 negative regulation of TORC1 signaling IEP Predict GO terms from Neighborhoods
BP GO:1904375 regulation of protein localization to cell periphery IEP Predict GO terms from Neighborhoods
BP GO:1904377 positive regulation of protein localization to cell periphery IEP Predict GO terms from Neighborhoods
BP GO:1905037 autophagosome organization IEP Predict GO terms from Neighborhoods
CC GO:1905368 peptidase complex IEP Predict GO terms from Neighborhoods
BP GO:1905477 positive regulation of protein localization to membrane IEP Predict GO terms from Neighborhoods
MF GO:1990448 exon-exon junction complex binding IEP Predict GO terms from Neighborhoods
BP GO:2000772 regulation of cellular senescence IEP Predict GO terms from Neighborhoods
BP GO:2001021 negative regulation of response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:2001243 negative regulation of intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR007262 Vps55/LEPROT 80 174
No external refs found!