SOLTUB.AGRIA.G00000032116

Description : Phytochrome a-associated f-box protein

Gene families : OG_02_0010549 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000032116
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_19

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007602	phototransduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009585	red, far-red light phototransduction	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010099	regulation of photomorphogenesis	IEA	AHRD
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048366	leaf development	IEA	AHRD
BP	GO:0048573	photoperiodism, flowering	IEA	AHRD
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000030	regulation of response to red or far red light	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predict GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predict GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0000976	transcription cis-regulatory region binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001067	transcription regulatory region nucleic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001578	microtubule bundle formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0001653	peptide receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0003352	regulation of cilium movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0003353	positive regulation of cilium movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0003356	regulation of cilium beat frequency	IEP	Predict GO terms from Neighborhoods
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003713	transcription coactivator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004339	glucan 1,4-alpha-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004556	alpha-amylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004675	transmembrane receptor protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Predict GO terms from Neighborhoods
CC	GO:0005814	centriole	IEP	Predict GO terms from Neighborhoods
CC	GO:0005875	microtubule associated complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005879	axonemal microtubule	IEP	Predict GO terms from Neighborhoods
CC	GO:0005881	cytoplasmic microtubule	IEP	Predict GO terms from Neighborhoods
CC	GO:0005929	cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0006473	protein acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006475	internal protein amino acid acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006690	icosanoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007288	sperm axoneme assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0007291	sperm individualization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007349	cellularization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007389	pattern specification process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009553	embryo sac development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009719	response to endogenous stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009725	response to hormone	IEP	Predict GO terms from Neighborhoods
BP	GO:0009791	post-embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009838	abscission	IEP	Predict GO terms from Neighborhoods
BP	GO:0009888	tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009956	radial pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010078	maintenance of root meristem identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010082	regulation of root meristem growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0010087	phloem or xylem histogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010103	stomatal complex morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010214	seed coat development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010243	response to organonitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010597	green leaf volatile biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010600	regulation of auxin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0014807	regulation of somitogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0015926	glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016160	amylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016573	histone acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0016578	histone deubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0016579	protein deubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0018094	protein polyglycylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018095	protein polyglutamylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018200	peptidyl-glutamic acid modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0019199	transmembrane receptor protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019372	lipoxygenase pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0030247	polysaccharide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031514	motile cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0032350	regulation of hormone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032501	multicellular organismal process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032886	regulation of microtubule-based process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032922	circadian regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0035082	axoneme assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0035520	monoubiquitinated protein deubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0035521	monoubiquitinated histone deubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0035522	monoubiquitinated histone H2A deubiquitination	IEP	Predict GO terms from Neighborhoods
CC	GO:0036064	ciliary basal body	IEP	Predict GO terms from Neighborhoods
CC	GO:0036126	sperm flagellum	IEP	Predict GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0040017	positive regulation of locomotion	IEP	Predict GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042752	regulation of circadian rhythm	IEP	Predict GO terms from Neighborhoods
BP	GO:0042753	positive regulation of circadian rhythm	IEP	Predict GO terms from Neighborhoods
BP	GO:0042754	negative regulation of circadian rhythm	IEP	Predict GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0043433	negative regulation of DNA-binding transcription factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043543	protein acylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0043895	cyclomaltodextrin glucanotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043966	histone H3 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045892	negative regulation of DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048481	plant ovule development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048518	positive regulation of biological process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048520	positive regulation of behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0048571	long-day photoperiodism	IEP	Predict GO terms from Neighborhoods
BP	GO:0048574	long-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0050795	regulation of behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0051090	regulation of DNA-binding transcription factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0060259	regulation of feeding behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0060295	regulation of cilium movement involved in cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:0060296	regulation of cilium beat frequency involved in ciliary motility	IEP	Predict GO terms from Neighborhoods
BP	GO:0060632	regulation of microtubule-based movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0065001	specification of axis polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070646	protein modification by small protein removal	IEP	Predict GO terms from Neighborhoods
BP	GO:0090057	root radial pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090354	regulation of auxin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090626	plant epidermis morphogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0097540	axonemal central pair	IEP	Predict GO terms from Neighborhoods
CC	GO:0097545	axonemal outer doublet	IEP	Predict GO terms from Neighborhoods
CC	GO:0097729	9+2 motile cilium	IEP	Predict GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140110	transcription regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900426	positive regulation of defense response to bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:1901002	positive regulation of response to salt stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1901207	regulation of heart looping	IEP	Predict GO terms from Neighborhoods
BP	GO:1901317	regulation of flagellated sperm motility	IEP	Predict GO terms from Neighborhoods
BP	GO:1901698	response to nitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:1902019	regulation of cilium-dependent cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:1902093	positive regulation of flagellated sperm motility	IEP	Predict GO terms from Neighborhoods
BP	GO:1902288	regulation of defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
BP	GO:1902290	positive regulation of defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
BP	GO:1902455	negative regulation of stem cell population maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:1902584	positive regulation of response to water deprivation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:1905330	regulation of morphogenesis of an epithelium	IEP	Predict GO terms from Neighborhoods
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000036	regulation of stem cell population maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:2000038	regulation of stomatal complex development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000147	positive regulation of cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:2000155	positive regulation of cilium-dependent cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:2000241	regulation of reproductive process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000253	positive regulation of feeding behavior	IEP	Predict GO terms from Neighborhoods
MF	GO:2001070	starch binding	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036047	F-box-like_dom_sf	9	85

External Links

No external refs found!

SOLTUB.AGRIA.G00000032116

Expression Profile

Co-expression Networks

Functional Annotation