SOLTUB.AGRIA.G00000032156

Description : syntaxin

Gene families : OG_02_0016596 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000032156
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_244

Type	GO Term	Name	Evidence	Source
BP	GO:0000045	autophagosome assembly	IEA	AHRD
MF	GO:0000149	SNARE binding	None	Extended
CC	GO:0000407	phagophore assembly site	IEA	AHRD
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005484	SNAP receptor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005765	lysosomal membrane	IEA	AHRD
CC	GO:0005768	endosome	None	Extended
CC	GO:0005774	vacuolar membrane	None	Extended
CC	GO:0005783	endoplasmic reticulum	IEA	AHRD
CC	GO:0005802	trans-Golgi network	IEA	AHRD
BP	GO:0006810	transport	None	Extended
BP	GO:0006869	lipid transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	AHRD
BP	GO:0006906	vesicle fusion	IEA	AHRD
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007030	Golgi organization	None	Extended
BP	GO:0007032	endosome organization	None	Extended
BP	GO:0007033	vacuole organization	None	Extended
BP	GO:0007034	vacuolar transport	None	Extended
BP	GO:0007041	lysosomal transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008333	endosome to lysosome transport	IEA	AHRD
BP	GO:0009306	protein secretion	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	None	Extended
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009660	amyloplast organization	IEA	AHRD
CC	GO:0009705	plant-type vacuole membrane	IEA	AHRD
BP	GO:0009959	negative gravitropism	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
CC	GO:0010008	endosome membrane	None	Extended
BP	GO:0010118	stomatal movement	IEA	AHRD
CC	GO:0012506	vesicle membrane	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015850	organic hydroxy compound transport	None	Extended
BP	GO:0015918	sterol transport	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0016021	integral component of membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016050	vesicle organization	None	Extended
BP	GO:0016189	synaptic vesicle to endosome fusion	IEA	AHRD
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
MF	GO:0019905	syntaxin binding	IEA	AHRD
BP	GO:0022406	membrane docking	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0030139	endocytic vesicle	None	Extended
CC	GO:0030285	integral component of synaptic vesicle membrane	IEA	AHRD
BP	GO:0030301	cholesterol transport	None	Extended
CC	GO:0030659	cytoplasmic vesicle membrane	None	Extended
MF	GO:0030674	protein-macromolecule adaptor activity	None	Extended
CC	GO:0031082	BLOC complex	None	Extended
CC	GO:0031083	BLOC-1 complex	IEA	AHRD
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031201	SNARE complex	IEA	AHRD
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031300	intrinsic component of organelle membrane	None	Extended
CC	GO:0031301	integral component of organelle membrane	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
BP	GO:0031647	regulation of protein stability	None	Extended
CC	GO:0031902	late endosome membrane	IEA	AHRD
CC	GO:0031982	vesicle	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
CC	GO:0031985	Golgi cisterna	IEA	AHRD
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032940	secretion by cell	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033344	cholesterol efflux	IEA	AHRD
BP	GO:0035592	establishment of protein localization to extracellular region	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	AHRD
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0044877	protein-containing complex binding	IEA	AHRD
CC	GO:0045121	membrane raft	IEA	AHRD
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0045324	late endosome to vacuole transport	IEA	AHRD
CC	GO:0045335	phagocytic vesicle	IEA	AHRD
BP	GO:0046903	secretion	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048278	vesicle docking	IEA	AHRD
BP	GO:0048284	organelle fusion	None	Extended
CC	GO:0048471	perinuclear region of cytoplasm	IEA	AHRD
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050821	protein stabilization	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
CC	GO:0055037	recycling endosome	None	Extended
MF	GO:0060090	molecular adaptor activity	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0061025	membrane fusion	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070925	organelle assembly	None	Extended
BP	GO:0071692	protein localization to extracellular region	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0090161	Golgi ribbon formation	IEA	AHRD
BP	GO:0090174	organelle membrane fusion	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098563	intrinsic component of synaptic vesicle membrane	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098837	postsynaptic recycling endosome	IEA	AHRD
CC	GO:0098845	postsynaptic endosome	None	Extended
CC	GO:0098852	lytic vacuole membrane	None	Extended
CC	GO:0098857	membrane microdomain	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140056	organelle localization by membrane tethering	None	Extended
BP	GO:0140352	export from cell	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1900150	regulation of defense response to fungus	IEA	AHRD
BP	GO:1905037	autophagosome organization	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000014	single-stranded DNA endodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0000109	nucleotide-excision repair complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000722	telomere maintenance via recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0000723	telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0000725	recombinational repair	IEP	Predict GO terms from Neighborhoods
CC	GO:0000781	chromosome, telomeric region	IEP	Predict GO terms from Neighborhoods
CC	GO:0000785	chromatin	IEP	Predict GO terms from Neighborhoods
BP	GO:0001666	response to hypoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:0003008	system process	IEP	Predict GO terms from Neighborhoods
MF	GO:0003684	damaged DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004520	endodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004536	deoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006281	DNA repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006282	regulation of DNA repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006284	base-excision repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006302	double-strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	Predict GO terms from Neighborhoods
BP	GO:0006304	DNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006310	DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0006312	mitotic recombination	IEP	Predict GO terms from Neighborhoods
MF	GO:0010385	double-stranded methylated DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0010562	positive regulation of phosphorus metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010639	negative regulation of organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010835	regulation of protein ADP-ribosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010836	negative regulation of protein ADP-ribosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010921	regulation of phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010922	positive regulation of phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0021587	cerebellum morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0021766	hippocampus development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031400	negative regulation of protein modification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032200	telomere organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032204	regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032205	negative regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
MF	GO:0032356	oxidized DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0033044	regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0033194	response to hydroperoxide	IEP	Predict GO terms from Neighborhoods
BP	GO:0035303	regulation of dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035306	positive regulation of dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035510	DNA dealkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0036293	response to decreased oxygen levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0043085	positive regulation of catalytic activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044093	positive regulation of molecular function	IEP	Predict GO terms from Neighborhoods
BP	GO:0044728	DNA methylation or demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045739	positive regulation of DNA repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0045937	positive regulation of phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050877	nervous system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050879	multicellular organismal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0050881	musculoskeletal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0050882	voluntary musculoskeletal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0050905	neuromuscular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051054	positive regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051105	regulation of DNA ligation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051106	positive regulation of DNA ligation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051129	negative regulation of cellular component organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051336	regulation of hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051340	regulation of ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051345	positive regulation of hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051351	positive regulation of ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061819	telomeric DNA-containing double minutes formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0070482	response to oxygen levels	IEP	Predict GO terms from Neighborhoods
CC	GO:0070522	ERCC4-ERCC1 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0070988	demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0080111	DNA demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0080135	regulation of cellular response to stress	IEP	Predict GO terms from Neighborhoods
CC	GO:0098687	chromosomal region	IEP	Predict GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Predict GO terms from Neighborhoods
BP	GO:1901968	regulation of polynucleotide 3'-phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901969	positive regulation of polynucleotide 3'-phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901971	regulation of DNA-5-methylcytosine glycosylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901972	positive regulation of DNA-5-methylcytosine glycosylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902544	regulation of DNA N-glycosylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902546	positive regulation of DNA N-glycosylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1903516	regulation of single strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:1903518	positive regulation of single strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:1904353	regulation of telomere capping	IEP	Predict GO terms from Neighborhoods
BP	GO:1904354	negative regulation of telomere capping	IEP	Predict GO terms from Neighborhoods
BP	GO:1904505	regulation of telomere maintenance in response to DNA damage	IEP	Predict GO terms from Neighborhoods
BP	GO:1904506	negative regulation of telomere maintenance in response to DNA damage	IEP	Predict GO terms from Neighborhoods
BP	GO:1904875	regulation of DNA ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904877	positive regulation of DNA ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1905764	regulation of protection from non-homologous end joining at telomere	IEP	Predict GO terms from Neighborhoods
BP	GO:1905765	negative regulation of protection from non-homologous end joining at telomere	IEP	Predict GO terms from Neighborhoods
BP	GO:1990414	replication-born double-strand break repair via sister chromatid exchange	IEP	Predict GO terms from Neighborhoods
MF	GO:1990599	3' overhang single-stranded DNA endodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2001020	regulation of response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:2001021	negative regulation of response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:2001022	positive regulation of response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:2001251	negative regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR010989	SNARE	71	278
IPR000727	T_SNARE_dom	259	311

External Links

No external refs found!

SOLTUB.AGRIA.G00000032156

Expression Profile

Co-expression Networks

Functional Annotation