SOLTUB.AGRIA.G00000032238

Description : Pentatricopeptide repeat-containing protein

Gene families : OG_02_0010563 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000032238
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_130

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	AHRD
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016553	base conversion or substitution editing	None	Extended
BP	GO:0016554	cytidine to uridine editing	IEA	AHRD
BP	GO:0016556	mRNA modification	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0031425	chloroplast RNA processing	IEA	AHRD
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1900865	chloroplast RNA modification	IEA	AHRD
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0000154	rRNA modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0000295	adenine nucleotide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0000373	Group II intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000469	cleavage involved in rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000917	division septum assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0000935	division septum	IEP	Predict GO terms from Neighborhoods
BP	GO:0001508	action potential	IEP	Predict GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001522	pseudouridine synthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0002027	regulation of heart rate	IEP	Predict GO terms from Neighborhoods
BP	GO:0002028	regulation of sodium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0002103	endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0003007	heart morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0003205	cardiac chamber development	IEP	Predict GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004222	metalloendopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004784	superoxide dismutase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005215	transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005346	purine ribonucleotide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005452	solute:inorganic anion antiporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005745	m-AAA complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006801	superoxide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006820	anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006862	nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006937	regulation of muscle contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0006942	regulation of striated muscle contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0007009	plasma membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007253	cytoplasmic sequestering of NF-kappaB	IEP	Predict GO terms from Neighborhoods
BP	GO:0007409	axonogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0008016	regulation of heart contraction	IEP	Predict GO terms from Neighborhoods
MF	GO:0008320	protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008509	anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0008540	proteasome regulatory particle, base subcomplex	IEP	Predict GO terms from Neighborhoods
CC	GO:0009526	plastid envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0009535	chloroplast thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009642	response to light intensity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009643	photosynthetic acclimation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009657	plastid organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0009670	triose-phosphate:phosphate antiporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009902	chloroplast relocation	IEP	Predict GO terms from Neighborhoods
CC	GO:0009925	basal plasma membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009941	chloroplast envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0010020	chloroplast fission	IEP	Predict GO terms from Neighborhoods
BP	GO:0010765	positive regulation of sodium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0010821	regulation of mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010823	negative regulation of mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010882	regulation of cardiac muscle contraction by calcium ion signaling	IEP	Predict GO terms from Neighborhoods
MF	GO:0015114	phosphate ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015119	hexose phosphate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015120	phosphoglycerate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015121	phosphoenolpyruvate:phosphate antiporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015152	glucose-6-phosphate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015215	nucleotide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015216	purine nucleotide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015315	organophosphate:inorganic phosphate antiporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015355	secondary active monocarboxylate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015450	protein-transporting ATPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015711	organic anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015712	hexose phosphate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015713	phosphoglycerate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015714	phosphoenolpyruvate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015717	triose phosphate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015748	organophosphate ester transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015760	glucose-6-phosphate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015865	purine nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015866	ADP transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015868	purine ribonucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015880	coenzyme A transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0016464	chloroplast protein-transporting ATPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0019430	removal of superoxide radicals	IEP	Predict GO terms from Neighborhoods
BP	GO:0019684	photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0019750	chloroplast localization	IEP	Predict GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0030428	cell septum	IEP	Predict GO terms from Neighborhoods
BP	GO:0031426	polycistronic mRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0031672	A band	IEP	Predict GO terms from Neighborhoods
CC	GO:0031674	I band	IEP	Predict GO terms from Neighborhoods
CC	GO:0031967	organelle envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0031975	envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0032088	negative regulation of NF-kappaB transcription factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032506	cytokinetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0034357	photosynthetic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034982	mitochondrial protein processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0035436	triose phosphate transmembrane transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0042170	plastid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0042383	sarcolemma	IEP	Predict GO terms from Neighborhoods
CC	GO:0042644	chloroplast nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042646	plastid nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042651	thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0042873	aldonate transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0042879	aldonate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042994	cytoplasmic sequestering of transcription factor	IEP	Predict GO terms from Neighborhoods
BP	GO:0043093	FtsZ-dependent cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0043248	proteasome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043268	positive regulation of potassium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043409	negative regulation of MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0043433	negative regulation of DNA-binding transcription factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043516	regulation of DNA damage response, signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:0043518	negative regulation of DNA damage response, signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:0043572	plastid fission	IEP	Predict GO terms from Neighborhoods
CC	GO:0044304	main axon	IEP	Predict GO terms from Neighborhoods
BP	GO:0045036	protein targeting to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0045037	protein import into chloroplast stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0045111	intermediate filament cytoskeleton	IEP	Predict GO terms from Neighborhoods
BP	GO:0045185	maintenance of protein location	IEP	Predict GO terms from Neighborhoods
BP	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050808	synapse organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0050897	cobalt ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051220	cytoplasmic sequestering of protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0051258	protein polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051279	regulation of release of sequestered calcium ion into cytosol	IEP	Predict GO terms from Neighborhoods
BP	GO:0051282	regulation of sequestering of calcium ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0051503	adenine nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051644	plastid localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051667	establishment of plastid localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051928	positive regulation of calcium ion transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0055035	plastid thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0055117	regulation of cardiac muscle contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0061061	muscle structure development	IEP	Predict GO terms from Neighborhoods
CC	GO:0062091	Ycf2/FtsHi complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0070682	proteasome regulatory particle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0071902	positive regulation of protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0071917	triose-phosphate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0072530	purine-containing compound transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0072598	protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0086001	cardiac muscle cell action potential	IEP	Predict GO terms from Neighborhoods
BP	GO:0086002	cardiac muscle cell action potential involved in contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0086004	regulation of cardiac muscle cell contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0086015	SA node cell action potential	IEP	Predict GO terms from Neighborhoods
BP	GO:0086065	cell communication involved in cardiac conduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0086066	atrial cardiac muscle cell to AV node cell communication	IEP	Predict GO terms from Neighborhoods
MF	GO:0089721	phosphoenolpyruvate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090199	regulation of release of cytochrome c from mitochondria	IEP	Predict GO terms from Neighborhoods
BP	GO:0090201	negative regulation of release of cytochrome c from mitochondria	IEP	Predict GO terms from Neighborhoods
BP	GO:0090257	regulation of muscle system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090480	purine nucleotide-sugar transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0090529	cell septum assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0098656	anion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098900	regulation of action potential	IEP	Predict GO terms from Neighborhoods
BP	GO:0098901	regulation of cardiac muscle cell action potential	IEP	Predict GO terms from Neighborhoods
MF	GO:0140318	protein transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140323	solute:anion antiporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140547	acquisition of seed longevity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900871	chloroplast mRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:1901016	regulation of potassium ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901019	regulation of calcium ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901264	carbohydrate derivative transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1901379	regulation of potassium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901679	nucleotide transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1901796	regulation of signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:1901797	negative regulation of signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:1903115	regulation of actin filament-based movement	IEP	Predict GO terms from Neighborhoods
BP	GO:1903169	regulation of calcium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903522	regulation of blood circulation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904031	positive regulation of cyclin-dependent protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904064	positive regulation of cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2001021	negative regulation of response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:2001257	regulation of cation channel activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	320	369
IPR002885	Pentatricopeptide_repeat	189	235
IPR002885	Pentatricopeptide_repeat	396	423
IPR002885	Pentatricopeptide_repeat	424	451
IPR002885	Pentatricopeptide_repeat	295	324
IPR002885	Pentatricopeptide_repeat	163	191
IPR002885	Pentatricopeptide_repeat	323	356
IPR002885	Pentatricopeptide_repeat	191	225
IPR002885	Pentatricopeptide_repeat	492	516
IPR002885	Pentatricopeptide_repeat	264	290
IPR002885	Pentatricopeptide_repeat	455	482
IPR032867	DYW_dom	592	715

External Links

No external refs found!

SOLTUB.AGRIA.G00000032238

Expression Profile

Co-expression Networks

Functional Annotation