SOLTUB.AGRIA.G00000034124

Description : Protein RDM1-like protein

Gene families : OG_02_0001163 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000034124
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_75

Type	GO Term	Name	Evidence	Source
CC	GO:0000419	RNA polymerase V complex	IEA	AHRD
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043621	protein self-association	IEA	AHRD
BP	GO:0044030	regulation of DNA methylation	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070918	small regulatory ncRNA processing	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004312	fatty acid synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Predict GO terms from Neighborhoods
BP	GO:0007549	dosage compensation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008037	cell recognition	IEP	Predict GO terms from Neighborhoods
BP	GO:0009048	dosage compensation by inactivation of X chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0009534	chloroplast thylakoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009608	response to symbiont	IEP	Predict GO terms from Neighborhoods
BP	GO:0009610	response to symbiotic fungus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009627	systemic acquired resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0009856	pollination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010344	seed oilbody biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010431	seed maturation	IEP	Predict GO terms from Neighborhoods
CC	GO:0012511	monolayer-surrounded lipid storage body	IEP	Predict GO terms from Neighborhoods
BP	GO:0015858	nucleoside transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0016297	acyl-[acyl-carrier-protein] hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016790	thiolester hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019863	IgE binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0019865	immunoglobulin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0021700	developmental maturation	IEP	Predict GO terms from Neighborhoods
CC	GO:0031976	plastid thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0034214	protein hexamerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034389	lipid droplet organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0042735	protein body	IEP	Predict GO terms from Neighborhoods
CC	GO:0043245	extraorganismal space	IEP	Predict GO terms from Neighborhoods
CC	GO:0043668	exine	IEP	Predict GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0045735	nutrient reservoir activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0048046	apoplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0048262	determination of dorsal/ventral asymmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0048544	recognition of pollen	IEP	Predict GO terms from Neighborhoods
BP	GO:0048565	digestive tract development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048609	multicellular organismal reproductive process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051259	protein complex oligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051260	protein homooligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0060320	rejection of self pollen	IEP	Predict GO terms from Neighborhoods
BP	GO:0060816	random inactivation of X chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0070206	protein trimerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0070207	protein homotrimerization	IEP	Predict GO terms from Neighborhoods
CC	GO:0070645	Ubisch body	IEP	Predict GO terms from Neighborhoods
BP	GO:0071465	cellular response to desiccation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071695	anatomical structure maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1900095	regulation of dosage compensation by inactivation of X chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:1901642	nucleoside transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902075	cellular response to salt	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR015270	RDM1_plant	35	153
IPR036319	RDM1_sf	34	153

External Links

No external refs found!

SOLTUB.AGRIA.G00000034124

Expression Profile

Co-expression Networks

Functional Annotation