SOLTUB.AGRIA.G00000034606


Description : 40s ribosomal protein s25


Gene families : OG_02_0001099 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000034606
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_128


Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEA AHRD
BP GO:0002181 cytoplasmic translation IEA AHRD
MF GO:0003729 mRNA binding IEA AHRD
MF GO:0003735 structural constituent of ribosome IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005774 vacuolar membrane IEA AHRD
BP GO:0006364 rRNA processing IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
CC GO:0014069 postsynaptic density IEA AHRD
CC GO:0022627 cytosolic small ribosomal subunit IEA AHRD
BP GO:0034198 cellular response to amino acid starvation IEA AHRD
CC GO:0042788 polysomal ribosome IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000027 ribosomal large subunit assembly IEP Predict GO terms from Neighborhoods
MF GO:0000035 acyl binding IEP Predict GO terms from Neighborhoods
MF GO:0000036 acyl carrier activity IEP Predict GO terms from Neighborhoods
BP GO:0000245 spliceosomal complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0000315 organellar large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0000387 spliceosomal snRNP assembly IEP Predict GO terms from Neighborhoods
BP GO:0000395 mRNA 5'-splice site recognition IEP Predict GO terms from Neighborhoods
BP GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0001501 skeletal system development IEP Predict GO terms from Neighborhoods
BP GO:0001503 ossification IEP Predict GO terms from Neighborhoods
BP GO:0002182 cytoplasmic translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0002227 innate immune response in mucosa IEP Predict GO terms from Neighborhoods
BP GO:0002251 organ or tissue specific immune response IEP Predict GO terms from Neighborhoods
BP GO:0002385 mucosal immune response IEP Predict GO terms from Neighborhoods
MF GO:0004845 uracil phosphoribosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004849 uridine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004857 enzyme inhibitor activity IEP Predict GO terms from Neighborhoods
CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005682 U5 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005683 U7 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005684 U2-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005685 U1 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005686 U2 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005687 U4 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005689 U12-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005697 telomerase holoenzyme complex IEP Predict GO terms from Neighborhoods
CC GO:0005762 mitochondrial large ribosomal subunit IEP Predict GO terms from Neighborhoods
CC GO:0005884 actin filament IEP Predict GO terms from Neighborhoods
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006222 UMP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006241 CTP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006376 mRNA splice site selection IEP Predict GO terms from Neighborhoods
BP GO:0006407 rRNA export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006450 regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0006914 autophagy IEP Predict GO terms from Neighborhoods
BP GO:0006959 humoral immune response IEP Predict GO terms from Neighborhoods
BP GO:0007498 mesoderm development IEP Predict GO terms from Neighborhoods
BP GO:0007605 sensory perception of sound IEP Predict GO terms from Neighborhoods
BP GO:0007631 feeding behavior IEP Predict GO terms from Neighborhoods
MF GO:0008097 5S rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0008655 pyrimidine-containing compound salvage IEP Predict GO terms from Neighborhoods
BP GO:0009106 lipoate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009107 lipoate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009112 nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009116 nucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009129 pyrimidine nucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009163 nucleoside biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009174 pyrimidine ribonucleoside monophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009245 lipid A biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009247 glycolipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009249 protein lipoylation IEP Predict GO terms from Neighborhoods
BP GO:0009635 response to herbicide IEP Predict GO terms from Neighborhoods
BP GO:0010138 pyrimidine ribonucleotide salvage IEP Predict GO terms from Neighborhoods
BP GO:0010257 NADH dehydrogenase complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0010821 regulation of mitochondrion organization IEP Predict GO terms from Neighborhoods
CC GO:0015934 large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0016226 iron-sulfur cluster assembly IEP Predict GO terms from Neighborhoods
BP GO:0016236 macroautophagy IEP Predict GO terms from Neighborhoods
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0019206 nucleoside kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0019730 antimicrobial humoral response IEP Predict GO terms from Neighborhoods
BP GO:0019731 antibacterial humoral response IEP Predict GO terms from Neighborhoods
MF GO:0019838 growth factor binding IEP Predict GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predict GO terms from Neighborhoods
CC GO:0022625 cytosolic large ribosomal subunit IEP Predict GO terms from Neighborhoods
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
CC GO:0030687 preribosome, large subunit precursor IEP Predict GO terms from Neighborhoods
BP GO:0031163 metallo-sulfur cluster assembly IEP Predict GO terms from Neighborhoods
BP GO:0031397 negative regulation of protein ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0031647 regulation of protein stability IEP Predict GO terms from Neighborhoods
BP GO:0032092 positive regulation of protein binding IEP Predict GO terms from Neighborhoods
BP GO:0032262 pyrimidine nucleotide salvage IEP Predict GO terms from Neighborhoods
BP GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032950 regulation of beta-glucan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032951 regulation of beta-glucan biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP Predict GO terms from Neighborhoods
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0033291 eukaryotic 80S initiation complex IEP Predict GO terms from Neighborhoods
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034463 90S preribosome assembly IEP Predict GO terms from Neighborhoods
CC GO:0034708 methyltransferase complex IEP Predict GO terms from Neighborhoods
CC GO:0034709 methylosome IEP Predict GO terms from Neighborhoods
CC GO:0034715 pICln-Sm protein complex IEP Predict GO terms from Neighborhoods
CC GO:0034719 SMN-Sm protein complex IEP Predict GO terms from Neighborhoods
CC GO:0035770 ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
BP GO:0042273 ribosomal large subunit biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0042303 molting cycle IEP Predict GO terms from Neighborhoods
BP GO:0042474 middle ear morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0042633 hair cycle IEP Predict GO terms from Neighborhoods
MF GO:0042975 peroxisome proliferator activated receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0043097 pyrimidine nucleoside salvage IEP Predict GO terms from Neighborhoods
BP GO:0043173 nucleotide salvage IEP Predict GO terms from Neighborhoods
BP GO:0043174 nucleoside salvage IEP Predict GO terms from Neighborhoods
CC GO:0043186 P granule IEP Predict GO terms from Neighborhoods
BP GO:0044085 cellular component biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0044206 UMP salvage IEP Predict GO terms from Neighborhoods
BP GO:0044211 CTP salvage IEP Predict GO terms from Neighborhoods
BP GO:0044571 [2Fe-2S] cluster assembly IEP Predict GO terms from Neighborhoods
MF GO:0044620 ACP phosphopantetheine attachment site binding IEP Predict GO terms from Neighborhoods
CC GO:0045202 synapse IEP Predict GO terms from Neighborhoods
BP GO:0046036 CTP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046049 UMP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046112 nucleobase biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046134 pyrimidine nucleoside biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046493 lipid A metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predict GO terms from Neighborhoods
BP GO:0048311 mitochondrion distribution IEP Predict GO terms from Neighborhoods
BP GO:0048318 axial mesoderm development IEP Predict GO terms from Neighborhoods
BP GO:0048678 response to axon injury IEP Predict GO terms from Neighborhoods
BP GO:0050821 protein stabilization IEP Predict GO terms from Neighborhoods
BP GO:0050830 defense response to Gram-positive bacterium IEP Predict GO terms from Neighborhoods
BP GO:0050954 sensory perception of mechanical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0051029 rRNA transport IEP Predict GO terms from Neighborhoods
MF GO:0051192 prosthetic group binding IEP Predict GO terms from Neighborhoods
BP GO:0051291 protein heterooligomerization IEP Predict GO terms from Neighborhoods
BP GO:0051438 regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051444 negative regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0055105 ubiquitin-protein transferase inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0055106 ubiquitin-protein transferase regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0061844 antimicrobial humoral immune response mediated by antimicrobial peptide IEP Predict GO terms from Neighborhoods
BP GO:0061919 process utilizing autophagic mechanism IEP Predict GO terms from Neighborhoods
CC GO:0070469 respirasome IEP Predict GO terms from Neighborhoods
CC GO:0070992 translation initiation complex IEP Predict GO terms from Neighborhoods
CC GO:0071004 U2-type prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071005 U2-type precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071007 U2-type catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071010 prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071011 precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071013 catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071014 post-mRNA release spliceosomal complex IEP Predict GO terms from Neighborhoods
BP GO:0071320 cellular response to cAMP IEP Predict GO terms from Neighborhoods
BP GO:0071433 cell wall repair IEP Predict GO terms from Neighborhoods
BP GO:0097064 ncRNA export from nucleus IEP Predict GO terms from Neighborhoods
MF GO:0097371 MDM2/MDM4 family protein binding IEP Predict GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Predict GO terms from Neighborhoods
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predict GO terms from Neighborhoods
CC GO:0098552 side of membrane IEP Predict GO terms from Neighborhoods
CC GO:0098554 cytoplasmic side of endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
CC GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
CC GO:0098562 cytoplasmic side of membrane IEP Predict GO terms from Neighborhoods
CC GO:0099128 mitochondrial iron-sulfur cluster assembly complex IEP Predict GO terms from Neighborhoods
CC GO:0120114 Sm-like protein family complex IEP Predict GO terms from Neighborhoods
MF GO:0140104 molecular carrier activity IEP Predict GO terms from Neighborhoods
MF GO:0140414 phosphopantetheine-dependent carrier activity IEP Predict GO terms from Neighborhoods
BP GO:1901269 lipooligosaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901796 regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1901798 positive regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1901799 negative regulation of proteasomal protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902253 regulation of intrinsic apoptotic signaling pathway by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902255 positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902533 positive regulation of intracellular signal transduction IEP Predict GO terms from Neighborhoods
BP GO:1904400 response to Thyroid stimulating hormone IEP Predict GO terms from Neighborhoods
BP GO:1904401 cellular response to Thyroid stimulating hormone IEP Predict GO terms from Neighborhoods
BP GO:1904587 response to glycoprotein IEP Predict GO terms from Neighborhoods
BP GO:1904588 cellular response to glycoprotein IEP Predict GO terms from Neighborhoods
BP GO:1904666 regulation of ubiquitin protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:1904667 negative regulation of ubiquitin protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:1990089 response to nerve growth factor IEP Predict GO terms from Neighborhoods
BP GO:1990090 cellular response to nerve growth factor stimulus IEP Predict GO terms from Neighborhoods
MF GO:1990935 splicing factor binding IEP Predict GO terms from Neighborhoods
MF GO:1990948 ubiquitin ligase inhibitor activity IEP Predict GO terms from Neighborhoods
BP GO:2000059 negative regulation of ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000434 regulation of protein neddylation IEP Predict GO terms from Neighborhoods
BP GO:2000435 negative regulation of protein neddylation IEP Predict GO terms from Neighborhoods
BP GO:2001006 regulation of cellulose biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2001235 positive regulation of apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001244 positive regulation of intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004977 Ribosomal_S25 9 105
No external refs found!